data_2D5
# 
_chem_comp.id                                    2D5 
_chem_comp.name                                  "5'-S-(3-{[(3R)-1,2,3,4-tetrahydroisoquinolin-3-ylcarbonyl]amino}propyl)-5'-thioadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H29 N7 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-09-21 
_chem_comp.pdbx_modified_date                    2014-10-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.586 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2D5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MQ4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2D5 N01  N01  N 0 1 N N N 2.493  78.955 38.999 8.724   3.940  0.820  N01  2D5 1  
2D5 C02  C02  C 0 1 Y N N 2.325  78.617 37.725 8.392   2.823  0.073  C02  2D5 2  
2D5 N03  N03  N 0 1 Y N N 1.308  77.836 37.335 9.182   2.403  -0.910 N03  2D5 3  
2D5 C04  C04  C 0 1 Y N N 1.175  77.515 35.977 8.873   1.338  -1.627 C04  2D5 4  
2D5 N05  N05  N 0 1 Y N N 1.984  77.931 35.110 7.779   0.638  -1.417 N05  2D5 5  
2D5 C06  C06  C 0 1 Y N N 3.086  78.755 35.485 6.928   0.982  -0.456 C06  2D5 6  
2D5 C07  C07  C 0 1 Y N N 3.244  79.100 36.799 7.215   2.104  0.340  C07  2D5 7  
2D5 N08  N08  N 0 1 Y N N 4.384  79.924 36.924 6.205   2.227  1.235  N08  2D5 8  
2D5 C09  C09  C 0 1 Y N N 4.913  80.074 35.710 5.341   1.273  1.047  C09  2D5 9  
2D5 N10  N10  N 0 1 Y N N 4.133  79.373 34.806 5.737   0.483  0.009  N10  2D5 10 
2D5 C11  C11  C 0 1 N N R 4.308  79.258 33.428 5.030   -0.692 -0.506 C11  2D5 11 
2D5 O12  O12  O 0 1 N N N 5.069  78.097 33.118 3.623   -0.611 -0.190 O12  2D5 12 
2D5 C13  C13  C 0 1 N N S 5.502  78.288 31.844 3.135   -1.967 -0.277 C13  2D5 13 
2D5 C14  C14  C 0 1 N N S 5.574  79.730 31.622 4.246   -2.829 0.363  C14  2D5 14 
2D5 O15  O15  O 0 1 N N N 4.757  80.049 30.568 4.387   -4.066 -0.338 O15  2D5 15 
2D5 C16  C16  C 0 1 N N R 5.129  80.300 32.874 5.522   -1.971 0.209  C16  2D5 16 
2D5 O17  O17  O 0 1 N N N 4.415  81.519 32.753 6.490   -2.652 -0.591 O17  2D5 17 
2D5 C18  C18  C 0 1 N N N 6.816  77.644 31.645 1.829   -2.114 0.507  C18  2D5 18 
2D5 S19  S19  S 0 1 N N N 7.376  77.632 29.953 0.529   -1.136 -0.296 S19  2D5 19 
2D5 C20  C20  C 0 1 N N N 9.064  77.222 29.934 -0.916  -1.433 0.760  C20  2D5 20 
2D5 C21  C21  C 0 1 N N N 9.668  76.016 30.648 -2.118  -0.664 0.208  C21  2D5 21 
2D5 C22  C22  C 0 1 N N N 10.649 75.201 29.749 -3.336  -0.914 1.099  C22  2D5 22 
2D5 N23  N23  N 0 1 N N N 12.006 74.799 30.079 -4.487  -0.178 0.570  N23  2D5 23 
2D5 C24  C24  C 0 1 N N N 12.869 74.228 29.117 -5.678  -0.249 1.196  C24  2D5 24 
2D5 C25  C25  C 0 1 N N R 12.590 73.993 27.634 -6.862  0.508  0.652  C25  2D5 25 
2D5 N26  N26  N 0 1 N N N 11.212 74.176 27.284 -7.872  0.674  1.710  N26  2D5 26 
2D5 C27  C27  C 0 1 N N N 10.825 73.763 25.827 -8.904  1.623  1.283  C27  2D5 27 
2D5 C28  C28  C 0 1 Y N N 11.742 72.758 25.212 -9.466  1.223  -0.057 C28  2D5 28 
2D5 C29  C29  C 0 1 Y N N 11.450 72.285 24.033 -10.680 1.764  -0.451 C29  2D5 29 
2D5 C30  C30  C 0 1 Y N N 12.307 71.325 23.424 -11.230 1.429  -1.672 C30  2D5 30 
2D5 C31  C31  C 0 1 Y N N 13.388 70.904 24.048 -10.568 0.549  -2.507 C31  2D5 31 
2D5 C32  C32  C 0 1 Y N N 13.680 71.373 25.296 -9.359  0.008  -2.115 C32  2D5 32 
2D5 C33  C33  C 0 1 Y N N 12.852 72.304 25.861 -8.807  0.343  -0.888 C33  2D5 33 
2D5 C34  C34  C 0 1 N N N 13.223 72.760 27.194 -7.490  -0.278 -0.499 C34  2D5 34 
2D5 O35  O35  O 0 1 N N N 13.987 73.919 29.506 -5.798  -0.923 2.198  O35  2D5 35 
2D5 H011 H011 H 0 0 N N N 1.769  78.543 39.552 9.542   4.426  0.629  H011 2D5 36 
2D5 H012 H012 H 0 0 N N N 3.383  78.627 39.316 8.138   4.239  1.532  H012 2D5 37 
2D5 H041 H041 H 0 0 N N N 0.351  76.890 35.666 9.543   1.031  -2.417 H041 2D5 38 
2D5 H091 H091 H 0 0 N N N 5.799  80.645 35.472 4.438   1.132  1.622  H091 2D5 39 
2D5 H111 H111 H 0 0 N N N 3.337  79.227 32.913 5.174   -0.779 -1.583 H111 2D5 40 
2D5 H131 H131 H 0 0 N N N 4.787  77.854 31.129 2.987   -2.251 -1.319 H131 2D5 41 
2D5 H141 H141 H 0 0 N N N 6.615  80.025 31.422 4.030   -3.010 1.416  H141 2D5 42 
2D5 H151 H151 H 0 0 N N N 4.793  80.985 30.411 5.071   -4.646 0.022  H151 2D5 43 
2D5 H161 H161 H 0 0 N N N 6.002  80.453 33.526 5.937   -1.726 1.187  H161 2D5 44 
2D5 H171 H171 H 0 0 N N N 4.984  82.185 32.385 6.832   -3.462 -0.190 H171 2D5 45 
2D5 H181 H181 H 0 0 N N N 7.559  78.183 32.250 1.534   -3.163 0.528  H181 2D5 46 
2D5 H182 H182 H 0 0 N N N 6.746  76.603 31.992 1.975   -1.757 1.526  H182 2D5 47 
2D5 H201 H201 H 0 0 N N N 9.327  77.100 28.873 -1.142  -2.499 0.775  H201 2D5 48 
2D5 H202 H202 H 0 0 N N N 9.586  78.100 30.342 -0.701  -1.093 1.773  H202 2D5 49 
2D5 H211 H211 H 0 0 N N N 10.217 76.371 31.532 -1.891  0.402  0.193  H211 2D5 50 
2D5 H212 H212 H 0 0 N N N 8.851  75.352 30.966 -2.332  -1.004 -0.805 H212 2D5 51 
2D5 H221 H221 H 0 0 N N N 10.120 74.262 29.531 -3.563  -1.980 1.113  H221 2D5 52 
2D5 H222 H222 H 0 0 N N N 10.744 75.791 28.826 -3.122  -0.574 2.112  H222 2D5 53 
2D5 H231 H231 H 0 0 N N N 12.338 74.930 31.013 -4.392  0.361  -0.231 H231 2D5 54 
2D5 H251 H251 H 0 0 N N N 13.134 74.799 27.119 -6.540  1.487  0.298  H251 2D5 55 
2D5 H261 H261 H 0 0 N N N 10.659 73.632 27.915 -8.279  -0.214 1.963  H261 2D5 56 
2D5 H271 H271 H 0 0 N N N 9.811  73.338 25.847 -9.707  1.638  2.020  H271 2D5 57 
2D5 H272 H272 H 0 0 N N N 10.832 74.666 25.199 -8.469  2.619  1.208  H272 2D5 58 
2D5 H291 H291 H 0 0 N N N 10.561 72.620 23.520 -11.199 2.452  0.200  H291 2D5 59 
2D5 H301 H301 H 0 0 N N N 12.069 70.939 22.444 -12.177 1.852  -1.974 H301 2D5 60 
2D5 H311 H311 H 0 0 N N N 14.043 70.188 23.573 -10.994 0.284  -3.464 H311 2D5 61 
2D5 H321 H321 H 0 0 N N N 14.549 71.016 25.828 -8.841  -0.679 -2.768 H321 2D5 62 
2D5 H341 H341 H 0 0 N N N 14.312 72.915 27.208 -6.817  -0.266 -1.355 H341 2D5 63 
2D5 H342 H342 H 0 0 N N N 12.956 71.968 27.909 -7.656  -1.309 -0.185 H342 2D5 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2D5 N01 C02  SING N N 1  
2D5 C02 N03  DOUB Y N 2  
2D5 C02 C07  SING Y N 3  
2D5 N03 C04  SING Y N 4  
2D5 C04 N05  DOUB Y N 5  
2D5 N05 C06  SING Y N 6  
2D5 C06 C07  DOUB Y N 7  
2D5 C06 N10  SING Y N 8  
2D5 C07 N08  SING Y N 9  
2D5 N08 C09  DOUB Y N 10 
2D5 C09 N10  SING Y N 11 
2D5 N10 C11  SING N N 12 
2D5 C11 O12  SING N N 13 
2D5 C11 C16  SING N N 14 
2D5 O12 C13  SING N N 15 
2D5 C13 C14  SING N N 16 
2D5 C13 C18  SING N N 17 
2D5 C14 O15  SING N N 18 
2D5 C14 C16  SING N N 19 
2D5 C16 O17  SING N N 20 
2D5 C18 S19  SING N N 21 
2D5 S19 C20  SING N N 22 
2D5 C20 C21  SING N N 23 
2D5 C21 C22  SING N N 24 
2D5 C22 N23  SING N N 25 
2D5 N23 C24  SING N N 26 
2D5 C24 C25  SING N N 27 
2D5 C24 O35  DOUB N N 28 
2D5 C25 N26  SING N N 29 
2D5 C25 C34  SING N N 30 
2D5 N26 C27  SING N N 31 
2D5 C27 C28  SING N N 32 
2D5 C28 C29  DOUB Y N 33 
2D5 C28 C33  SING Y N 34 
2D5 C29 C30  SING Y N 35 
2D5 C30 C31  DOUB Y N 36 
2D5 C31 C32  SING Y N 37 
2D5 C32 C33  DOUB Y N 38 
2D5 C33 C34  SING N N 39 
2D5 N01 H011 SING N N 40 
2D5 N01 H012 SING N N 41 
2D5 C04 H041 SING N N 42 
2D5 C09 H091 SING N N 43 
2D5 C11 H111 SING N N 44 
2D5 C13 H131 SING N N 45 
2D5 C14 H141 SING N N 46 
2D5 O15 H151 SING N N 47 
2D5 C16 H161 SING N N 48 
2D5 O17 H171 SING N N 49 
2D5 C18 H181 SING N N 50 
2D5 C18 H182 SING N N 51 
2D5 C20 H201 SING N N 52 
2D5 C20 H202 SING N N 53 
2D5 C21 H211 SING N N 54 
2D5 C21 H212 SING N N 55 
2D5 C22 H221 SING N N 56 
2D5 C22 H222 SING N N 57 
2D5 N23 H231 SING N N 58 
2D5 C25 H251 SING N N 59 
2D5 N26 H261 SING N N 60 
2D5 C27 H271 SING N N 61 
2D5 C27 H272 SING N N 62 
2D5 C29 H291 SING N N 63 
2D5 C30 H301 SING N N 64 
2D5 C31 H311 SING N N 65 
2D5 C32 H321 SING N N 66 
2D5 C34 H341 SING N N 67 
2D5 C34 H342 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2D5 SMILES           ACDLabs              12.01 "O=C(NCCCSCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C5NCc4ccccc4C5" 
2D5 InChI            InChI                1.03  
"InChI=1S/C23H29N7O4S/c24-20-17-21(28-11-27-20)30(12-29-17)23-19(32)18(31)16(34-23)10-35-7-3-6-25-22(33)15-8-13-4-1-2-5-14(13)9-26-15/h1-2,4-5,11-12,15-16,18-19,23,26,31-32H,3,6-10H2,(H,25,33)(H2,24,27,28)/t15-,16-,18-,19-,23-/m1/s1" 
2D5 InChIKey         InChI                1.03  HMZSUDMWDJASBZ-AXKRAVOISA-N 
2D5 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCNC(=O)[C@H]4Cc5ccccc5CN4)[C@@H](O)[C@H]3O" 
2D5 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCNC(=O)[CH]4Cc5ccccc5CN4)[CH](O)[CH]3O" 
2D5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)C[C@@H](NC2)C(=O)NCCCSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 
2D5 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)CC(NC2)C(=O)NCCCSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2D5 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-S-(3-{[(3R)-1,2,3,4-tetrahydroisoquinolin-3-ylcarbonyl]amino}propyl)-5'-thioadenosine"                                                         
2D5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3R)-N-[3-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]propyl]-1,2,3,4-tetrahydroisoquinoline-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2D5 "Create component" 2013-09-21 RCSB 
2D5 "Initial release"  2014-10-15 RCSB 
# 
