data_475
#

_chem_comp.id                                   475
_chem_comp.name                                 "N-[oxo(pyridin-2-ylamino)acetyl]-beta-D-glucopyranosylamine"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H17 N3 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;N-[oxo(pyridin-2-ylamino)acetyl]-beta-D-glucosylamine; N-[oxo(pyridin-2-ylamino)acetyl]-D-glucosylamine;
N-[oxo(pyridin-2-ylamino)acetyl]-glucosylamine
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-23
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       327.290
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    475
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CUV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  475  "N-[oxo(pyridin-2-ylamino)acetyl]-beta-D-glucosylamine"  PDB  ?  
2  475  "N-[oxo(pyridin-2-ylamino)acetyl]-D-glucosylamine"       PDB  ?  
3  475  "N-[oxo(pyridin-2-ylamino)acetyl]-glucosylamine"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
475  C2   C2   C  0  1  N  N  R  33.661  22.994  25.995  -2.463  -1.527   0.117  C2   475   1  
475  N2   N2   N  0  1  N  N  N  35.345  25.002  31.358   3.154   0.495  -0.668  N2   475   2  
475  C3   C3   C  0  1  N  N  S  32.535  22.393  25.138  -3.915  -1.342  -0.335  C3   475   3  
475  C5   C5   C  0  1  N  N  R  32.105  20.751  27.049  -3.613   1.116  -0.023  C5   475   4  
475  O6   O6   O  0  1  N  N  N  33.040  18.502  26.930  -3.401   3.506   0.267  O6   475   5  
475  C4   C4   C  0  1  N  N  S  32.259  20.924  25.517  -4.490  -0.088   0.332  C4   475   6  
475  C10  C10  C  0  1  Y  N  N  37.638  25.669  31.675   5.517   0.724  -1.059  C10  475   7  
475  C11  C11  C  0  1  Y  N  N  38.610  26.194  32.527   6.819   0.490  -0.651  C11  475   8  
475  C12  C12  C  0  1  Y  N  N  38.245  26.531  33.830   7.027  -0.197   0.538  C12  475   9  
475  C13  C13  C  0  1  Y  N  N  36.926  26.344  34.244   5.938  -0.624   1.272  C13  475  10  
475  N3   N3   N  0  1  Y  N  N  36.021  25.843  33.409   4.708  -0.386   0.858  N3   475  11  
475  C9   C9   C  0  1  Y  N  N  36.327  25.497  32.140   4.468   0.266  -0.269  C9   475  12  
475  C8   C8   C  0  1  N  N  N  35.525  24.360  30.197   2.134  -0.034   0.037  C8   475  13  
475  O8   O8   O  0  1  N  N  N  36.627  24.125  29.692   2.356  -0.631   1.070  O8   475  14  
475  C7   C7   C  0  1  N  N  N  34.290  23.870  29.433   0.731   0.115  -0.453  C7   475  15  
475  O7   O7   O  0  1  N  N  N  33.166  24.073  29.893   0.509   0.713  -1.486  O7   475  16  
475  N1   N1   N  0  1  N  N  N  34.506  23.236  28.282  -0.289  -0.413   0.252  N1   475  17  
475  C1   C1   C  0  1  N  N  R  33.389  22.726  27.481  -1.665  -0.267  -0.229  C1   475  18  
475  O5   O5   O  0  1  N  N  N  33.254  21.305  27.737  -2.270   0.866   0.397  O5   475  19  
475  C6   C6   C  0  1  N  N  N  31.969  19.284  27.483  -4.146   2.362   0.688  C6   475  20  
475  O4   O4   O  0  1  N  N  N  31.075  20.470  24.852  -5.821   0.135  -0.139  O4   475  21  
475  O3   O3   O  0  1  N  N  N  32.893  22.489  23.755  -4.685  -2.483   0.050  O3   475  22  
475  O2   O2   O  0  1  N  N  N  33.762  24.404  25.763  -1.894  -2.652  -0.554  O2   475  23  
475  H2   H2   H  0  1  N  N  N  34.612  22.519  25.713  -2.435  -1.691   1.194  H2   475  24  
475  HN2  HN2  H  0  1  N  N  N  34.404  25.125  31.672   2.972   1.035  -1.453  HN2  475  25  
475  H3   H3   H  0  1  N  N  N  31.612  22.961  25.325  -3.948  -1.226  -1.418  H3   475  26  
475  H5   H5   H  0  1  N  N  N  31.179  21.282  27.316  -3.634   1.276  -1.100  H5   475  27  
475  HO6  HO6  H  0  1  N  Y  N  32.866  18.329  26.012  -3.685   4.334   0.679  HO6  475  28  
475  H4   H4   H  0  1  N  N  N  33.120  20.320  25.196  -4.503  -0.223   1.413  H4   475  29  
475  H10  H10  H  0  1  N  N  N  37.895  25.396  30.662   5.319   1.260  -1.976  H10  475  30  
475  H11  H11  H  0  1  N  N  N  39.624  26.336  32.184   7.654   0.834  -1.243  H11  475  31  
475  H12  H12  H  0  1  N  N  N  38.978  26.934  34.513   8.030  -0.397   0.884  H12  475  32  
475  H13  H13  H  0  1  N  N  N  36.638  26.608  35.251   6.095  -1.158   2.197  H13  475  33  
475  HN1  HN1  H  0  1  N  N  N  35.444  23.106  27.959  -0.112  -0.891   1.077  HN1  475  34  
475  H1   H1   H  0  1  N  N  N  32.451  23.233  27.753  -1.660  -0.125  -1.310  H1   475  35  
475  H61  H6   H  0  1  N  N  N  32.007  19.226  28.581  -5.198   2.501   0.438  H61  475  36  
475  H62  H6A  H  0  1  N  N  N  31.010  18.889  27.118  -4.043   2.237   1.766  H62  475  37  
475  HO4  HO4  H  0  1  N  Y  N  30.374  20.369  25.486  -6.431  -0.591   0.048  HO4  475  38  
475  HO3  HO3  H  0  1  N  Y  N  32.105  22.510  23.224  -4.372  -3.315  -0.331  HO3  475  39  
475  HO2  HO2  H  0  1  N  Y  N  33.784  24.862  26.595  -0.974  -2.829  -0.316  HO2  475  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
475  C2   C3   SING  N  N   1  
475  C2   C1   SING  N  N   2  
475  C2   O2   SING  N  N   3  
475  N2   C9   SING  N  N   4  
475  N2   C8   SING  N  N   5  
475  C3   C4   SING  N  N   6  
475  C3   O3   SING  N  N   7  
475  C5   C4   SING  N  N   8  
475  C5   O5   SING  N  N   9  
475  C5   C6   SING  N  N  10  
475  O6   C6   SING  N  N  11  
475  C4   O4   SING  N  N  12  
475  C10  C11  DOUB  Y  N  13  
475  C10  C9   SING  Y  N  14  
475  C11  C12  SING  Y  N  15  
475  C12  C13  DOUB  Y  N  16  
475  C13  N3   SING  Y  N  17  
475  N3   C9   DOUB  Y  N  18  
475  C8   O8   DOUB  N  N  19  
475  C8   C7   SING  N  N  20  
475  C7   O7   DOUB  N  N  21  
475  C7   N1   SING  N  N  22  
475  N1   C1   SING  N  N  23  
475  C1   O5   SING  N  N  24  
475  C2   H2   SING  N  N  25  
475  N2   HN2  SING  N  N  26  
475  C3   H3   SING  N  N  27  
475  C5   H5   SING  N  N  28  
475  O6   HO6  SING  N  N  29  
475  C4   H4   SING  N  N  30  
475  C10  H10  SING  N  N  31  
475  C11  H11  SING  N  N  32  
475  C12  H12  SING  N  N  33  
475  C13  H13  SING  N  N  34  
475  N1   HN1  SING  N  N  35  
475  C1   H1   SING  N  N  36  
475  C6   H61  SING  N  N  37  
475  C6   H62  SING  N  N  38  
475  O4   HO4  SING  N  N  39  
475  O3   HO3  SING  N  N  40  
475  O2   HO2  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
475  SMILES            ACDLabs               10.04  "O=C(NC1OC(C(O)C(O)C1O)CO)C(=O)Nc2ncccc2"  
475  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](NC(=O)C(=O)Nc2ccccn2)[C@H](O)[C@@H](O)[C@@H]1O"  
475  SMILES            CACTVS                3.341  "OC[CH]1O[CH](NC(=O)C(=O)Nc2ccccn2)[CH](O)[CH](O)[CH]1O"  
475  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccnc(c1)NC(=O)C(=O)N[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"  
475  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccnc(c1)NC(=O)C(=O)NC2C(C(C(C(O2)CO)O)O)O"  
475  InChI             InChI                 1.03   "InChI=1S/C13H17N3O7/c17-5-6-8(18)9(19)10(20)13(23-6)16-12(22)11(21)15-7-3-1-2-4-14-7/h1-4,6,8-10,13,17-20H,5H2,(H,16,22)(H,14,15,21)/t6-,8-,9+,10-,13-/m1/s1"  
475  InChIKey          InChI                 1.03   XWDCGBAAIPNJDU-ODYQSLDMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
475  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[oxo(pyridin-2-ylamino)acetyl]-beta-D-glucopyranosylamine"  
475  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-pyridin-2-yl-N'-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]ethanediamide"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
475  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
475  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
475  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
475  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
475  "Create component"          2008-04-23  PDBJ  
475  "Modify aromatic_flag"      2011-06-04  RCSB  
475  "Modify descriptor"         2011-06-04  RCSB  
475  "Other modification"        2020-07-03  RCSB  
475  "Modify synonyms"           2020-07-17  RCSB  
475  "Modify internal type"      2020-07-17  RCSB  
475  "Modify linking type"       2020-07-17  RCSB  
475  "Modify atom id"            2020-07-17  RCSB  
475  "Modify component atom id"  2020-07-17  RCSB  
475  "Modify leaving atom flag"  2020-07-17  RCSB  
##
