data_655
#

_chem_comp.id                                   655
_chem_comp.name                                 "2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-(CYCLOPENTYLOXY)BENZENOLATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_10655
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       336.388
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    655
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O2I
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
655  C1      C1      C   0  1  Y  N  N  44.291  -2.880  26.677   5.173   0.360  -0.084  C1      655   1  
655  C2      C2      C   0  1  Y  N  N  44.873  -1.560  26.654   5.275  -0.932  -0.613  C2      655   2  
655  C3      C3      C   0  1  Y  N  N  44.873  -0.770  27.787   4.164  -1.714  -0.750  C3      655   3  
655  C4      C4      C   0  1  Y  N  N  44.355  -1.292  28.933   2.919  -1.232  -0.363  C4      655   4  
655  C5      C5      C   0  1  Y  N  N  43.827  -2.537  29.007   2.798   0.065   0.171  C5      655   5  
655  C6      C6      C   0  1  Y  N  N  43.774  -3.366  27.881   3.937   0.858   0.314  C6      655   6  
655  C7      C7      C   0  1  N  N  N  44.318  -3.671  25.494   6.384   1.195   0.059  C7      655   7  
655  N1      N1      N   0  1  N  N  N  44.178  -4.971  25.588   6.290   2.425   0.562  N1      655   8  
655  N2      N2      N   1  1  N  N  N  44.491  -3.069  24.321   7.570   0.718  -0.316  N2      655   9  
655  N3      N3      N   0  1  Y  N  N  44.275  -0.785  30.116   1.646  -1.763  -0.375  N3      655  10  
655  N4      N4      N   0  1  Y  N  N  43.391  -2.810  30.222   1.486   0.260   0.454  N4      655  11  
655  C8      C8      C   0  1  Y  N  N  43.686  -1.687  30.869   0.803  -0.812   0.135  C8      655  12  
655  "C1'"   "C1'"   C   0  1  Y  N  N  43.410  -1.528  32.217  -0.656  -0.970   0.300  "C1'"   655  13  
655  "C2'"   "C2'"   C   0  1  Y  N  N  43.036  -2.629  32.993  -1.184  -2.185   0.743  "C2'"   655  14  
655  "C3'"   "C3'"   C   0  1  Y  N  N  42.750  -2.505  34.337  -2.547  -2.329   0.896  "C3'"   655  15  
655  "C4'"   "C4'"   C   0  1  Y  N  N  42.848  -1.252  34.930  -3.398  -1.274   0.612  "C4'"   655  16  
655  "C5'"   "C5'"   C   0  1  Y  N  N  43.212  -0.122  34.156  -2.888  -0.064   0.172  "C5'"   655  17  
655  "O5'"   "O5'"   O   0  1  N  N  N  43.340   1.149  34.674  -3.729   0.968  -0.105  "O5'"   655  18  
655  "C6'"   "C6'"   C   0  1  Y  N  N  43.495  -0.277  32.801  -1.515   0.097   0.018  "C6'"   655  19  
655  "O6'"   "O6'"   O  -1  1  N  N  N  43.848   0.796  32.007  -1.011   1.283  -0.414  "O6'"   655  20  
655  C1B     "C1''"  C   0  1  N  N  N  42.342   2.768  35.854  -5.928   1.786   0.535  C1B     655  21  
655  C2B     "C2''"  C   0  1  N  N  N  43.005   1.442  36.025  -5.036   0.555   0.298  C2B     655  22  
655  C3B     "C3''"  C   0  1  N  N  N  44.274   1.687  36.796  -5.703  -0.262  -0.827  C3B     655  23  
655  C4B     "C4''"  C   0  1  N  N  N  44.575   3.166  36.573  -7.192   0.161  -0.773  C4B     655  24  
655  C5B     "C5''"  C   0  1  N  N  N  43.188   3.750  36.615  -7.106   1.674  -0.455  C5B     655  25  
655  HC2     HC2     H   0  1  N  N  N  45.275  -1.151  25.731   6.239  -1.313  -0.916  HC2     655  26  
655  HC3     HC3     H   0  1  N  N  N  45.307   0.210  27.779   4.253  -2.709  -1.160  HC3     655  27  
655  HC6     HC6     H   0  1  N  N  N  43.338  -4.351  27.936   3.858   1.853   0.727  HC6     655  28  
655  HH11    HH11    H   0  0  N  N  N  44.031  -5.397  26.486   5.426   2.772   0.835  HH11    655  29  
655  HH12    HH12    H   0  0  N  N  N  44.146  -5.577  24.813   7.085   2.973   0.656  HH12    655  30  
655  HH21    HH21    H   0  0  N  N  N  44.580  -2.058  24.274   8.365   1.267  -0.223  HH21    655  31  
655  HH22    HH22    H   0  0  N  N  N  44.559  -3.550  23.451   7.640  -0.178  -0.679  HH22    655  32  
655  HN3     HN3     H   0  1  N  N  N  44.586   0.114  30.325   1.395  -2.647  -0.687  HN3     655  33  
655  "HC2'"  "HC2'"  H   0  0  N  N  N  42.964  -3.601  32.534  -0.526  -3.011   0.966  "HC2'"  655  34  
655  "HC3'"  "HC3'"  H   0  0  N  N  N  42.460  -3.375  34.915  -2.953  -3.270   1.239  "HC3'"  655  35  
655  "HC4'"  "HC4'"  H   0  0  N  N  N  42.630  -1.183  35.983  -4.464  -1.396   0.734  "HC4'"  655  36  
655  H1A     H1A     H   0  1  N  N  N  42.363   3.049  34.819  -6.300   1.786   1.560  H1A     655  37  
655  H1B     H1B     H   0  1  N  N  N  41.314   2.736  36.203  -5.364   2.699   0.342  H1B     655  38  
655  H2A     H2A     H   0  1  N  N  N  42.368   0.707  36.497  -4.975  -0.042   1.208  H2A     655  39  
655  H3A     H3A     H   0  1  N  N  N  44.057   1.582  37.841  -5.269  -0.006  -1.794  H3A     655  40  
655  H3B     H3B     H   0  1  N  N  N  45.029   0.980  36.498  -5.603  -1.330  -0.634  H3B     655  41  
655  H4A     H4A     H   0  1  N  N  N  45.004   3.357  35.588  -7.716  -0.372   0.021  H4A     655  42  
655  H4B     H4B     H   0  1  N  N  N  45.218   3.587  37.326  -7.676  -0.005  -1.735  H4B     655  43  
655  H5A     H5A     H   0  1  N  N  N  43.114   4.708  36.135  -8.029   2.019   0.011  H5A     655  44  
655  H5B     H5B     H   0  1  N  N  N  42.830   3.807  37.626  -6.899   2.243  -1.361  H5B     655  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
655  C1     C2      DOUB  Y  N   1  
655  C1     C6      SING  Y  N   2  
655  C1     C7      SING  N  N   3  
655  C2     C3      SING  Y  N   4  
655  C2     HC2     SING  N  N   5  
655  C3     C4      DOUB  Y  N   6  
655  C3     HC3     SING  N  N   7  
655  C4     C5      SING  Y  N   8  
655  C4     N3      SING  Y  N   9  
655  C5     C6      DOUB  Y  N  10  
655  C5     N4      SING  Y  N  11  
655  C6     HC6     SING  N  N  12  
655  C7     N1      SING  N  N  13  
655  C7     N2      DOUB  N  N  14  
655  N1     HH11    SING  N  N  15  
655  N1     HH12    SING  N  N  16  
655  N2     HH21    SING  N  N  17  
655  N2     HH22    SING  N  N  18  
655  N3     C8      SING  Y  N  19  
655  N3     HN3     SING  N  N  20  
655  N4     C8      DOUB  Y  N  21  
655  C8     "C1'"   SING  Y  N  22  
655  "C1'"  "C2'"   DOUB  Y  N  23  
655  "C1'"  "C6'"   SING  Y  N  24  
655  "C2'"  "C3'"   SING  Y  N  25  
655  "C2'"  "HC2'"  SING  N  N  26  
655  "C3'"  "C4'"   DOUB  Y  N  27  
655  "C3'"  "HC3'"  SING  N  N  28  
655  "C4'"  "C5'"   SING  Y  N  29  
655  "C4'"  "HC4'"  SING  N  N  30  
655  "C5'"  "O5'"   SING  N  N  31  
655  "C5'"  "C6'"   DOUB  Y  N  32  
655  "O5'"  C2B     SING  N  N  33  
655  "C6'"  "O6'"   SING  N  N  34  
655  C1B    C2B     SING  N  N  35  
655  C1B    C5B     SING  N  N  36  
655  C1B    H1A     SING  N  N  37  
655  C1B    H1B     SING  N  N  38  
655  C2B    C3B     SING  N  N  39  
655  C2B    H2A     SING  N  N  40  
655  C3B    C4B     SING  N  N  41  
655  C3B    H3A     SING  N  N  42  
655  C3B    H3B     SING  N  N  43  
655  C4B    C5B     SING  N  N  44  
655  C4B    H4A     SING  N  N  45  
655  C4B    H4B     SING  N  N  46  
655  C5B    H5A     SING  N  N  47  
655  C5B    H5B     SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
655  SMILES            ACDLabs               10.04  "[O-]c4c(OC1CCCC1)cccc4c3nc2cc(ccc2n3)\C(=[NH2+])N"  
655  SMILES_CANONICAL  CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(OC4CCCC4)c3[O-]"  
655  SMILES            CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(OC4CCCC4)c3[O-]"  
655  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c(c(c1)OC2CCCC2)[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N"  
655  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c(c(c1)OC2CCCC2)[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N"  
655  InChI             InChI                 1.03   "InChI=1S/C19H20N4O2/c20-18(21)11-8-9-14-15(10-11)23-19(22-14)13-6-3-7-16(17(13)24)25-12-4-1-2-5-12/h3,6-10,12,24H,1-2,4-5H2,(H3,20,21)(H,22,23)"  
655  InChIKey          InChI                 1.03   WCFWDBPDMBXMTQ-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
655  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-6-(cyclopentyloxy)phenolate"  
655  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-6-cyclopentyloxy-phenolate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
655  "Create component"      2003-03-14  RCSB  
655  "Modify aromatic_flag"  2011-06-04  RCSB  
655  "Modify descriptor"     2011-06-04  RCSB  
655  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     655
_pdbx_chem_comp_synonyms.name        CRA_10655
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
