data_875
# 
_chem_comp.id                                    875 
_chem_comp.name                                  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-azanyl-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H26 N6 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-26 
_chem_comp.pdbx_modified_date                    2022-11-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.347 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     875 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7W0J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
875 PA    P1  P 0 1 N N N -24.235 -16.673 40.872 0.527  -2.978 -0.461 PA    875 1  
875 O1A   O1  O 0 1 N N N -24.518 -16.983 42.303 0.723  -4.523 -0.053 O1A   875 2  
875 O2A   O2  O 0 1 N N N -23.032 -15.835 40.682 0.317  -2.876 -1.922 O2A   875 3  
875 O5B   O3  O 0 1 N N N -24.086 -18.041 40.058 -0.754 -2.378 0.308  O5B   875 4  
875 C5B   C1  C 0 1 N N N -23.129 -18.967 40.602 -2.087 -2.836 0.074  C5B   875 5  
875 C4B   C2  C 0 1 N N R -23.795 -20.301 40.820 -3.057 -2.058 0.966  C4B   875 6  
875 O4B   O4  O 0 1 N N N -23.545 -20.679 42.195 -3.090 -0.678 0.566  O4B   875 7  
875 C3B   C3  C 0 1 N N S -25.317 -20.375 40.644 -4.484 -2.618 0.800  C3B   875 8  
875 O3B   O5  O 0 1 N N N -25.675 -21.731 40.446 -4.980 -3.101 2.050  O3B   875 9  
875 C2B   C4  C 0 1 N N R -25.836 -20.186 42.066 -5.315 -1.402 0.322  C2B   875 10 
875 O2B   O6  O 0 1 N N N -27.093 -20.808 42.234 -6.592 -1.373 0.962  O2B   875 11 
875 C1B   C5  C 0 1 N N R -24.760 -20.909 42.867 -4.438 -0.209 0.781  C1B   875 12 
875 N9A   N1  N 0 1 Y N N -24.639 -20.239 44.134 -4.709 0.975  -0.038 N9A   875 13 
875 C8A   C6  C 0 1 Y N N -24.039 -19.031 44.371 -4.066 1.326  -1.187 C8A   875 14 
875 N7A   N2  N 0 1 Y N N -24.103 -18.679 45.634 -4.560 2.435  -1.654 N7A   875 15 
875 C5A   C7  C 0 1 Y N N -24.790 -19.717 46.250 -5.550 2.867  -0.836 C5A   875 16 
875 C6A   C8  C 0 1 Y N N -25.183 -19.940 47.580 -6.418 3.972  -0.831 C6A   875 17 
875 N6A   N3  N 0 1 N N N -24.936 -19.100 48.580 -6.359 4.922  -1.836 N6A   875 18 
875 N1A   N4  N 0 1 Y N N -25.858 -21.082 47.836 -7.296 4.084  0.160  N1A   875 19 
875 C2A   C9  C 0 1 Y N N -26.111 -21.930 46.833 -7.360 3.182  1.122  C2A   875 20 
875 N3A   N5  N 0 1 Y N N -25.789 -21.826 45.549 -6.568 2.131  1.159  N3A   875 21 
875 C4A   C10 C 0 1 Y N N -25.125 -20.683 45.328 -5.661 1.932  0.208  C4A   875 22 
875 N10   N6  N 0 1 N N N -31.276 -9.714  36.318 9.079  4.573  0.988  N10   875 23 
875 "C1'" C11 C 0 1 N N N -30.748 -11.078 36.406 8.688  3.426  0.158  "C1'" 875 24 
875 "C2'" C12 C 0 1 N N S -30.266 -11.448 37.805 7.398  2.815  0.709  "C2'" 875 25 
875 "O2'" O7  O 0 1 N N N -30.014 -10.269 38.562 7.613  2.379  2.053  "O2'" 875 26 
875 "C3'" C13 C 0 1 N N S -28.949 -12.230 37.760 6.990  1.620  -0.155 "C3'" 875 27 
875 "O3'" O8  O 0 1 N N N -28.777 -12.766 36.456 6.775  2.056  -1.499 "O3'" 875 28 
875 "C4'" C14 C 0 1 N N R -28.907 -13.370 38.782 5.700  1.008  0.395  "C4'" 875 29 
875 "O4'" O9  O 0 1 N N N -29.676 -12.990 39.924 5.915  0.573  1.739  "O4'" 875 30 
875 "C5'" C15 C 0 1 N N N -27.508 -13.699 39.253 5.292  -0.186 -0.469 "C5'" 875 31 
875 "O5'" O10 O 0 1 N N N -26.835 -14.673 38.406 4.028  -0.685 -0.026 "O5'" 875 32 
875 P     P2  P 0 1 N N N -25.312 -15.076 38.727 3.293  -1.943 -0.712 P     875 33 
875 O1P   O11 O 0 1 N N N -24.789 -15.886 37.583 3.142  -1.696 -2.163 O1P   875 34 
875 O2P   O12 O 0 1 N N N -24.574 -13.829 39.082 4.175  -3.270 -0.482 O2P   875 35 
875 O3P   O13 O 0 1 N N N -25.431 -15.965 40.066 1.840  -2.143 -0.048 O3P   875 36 
875 H1    H1  H 0 1 N N N -23.858 -16.576 42.852 0.866  -4.665 0.893  H1    875 37 
875 H2    H2  H 0 1 N N N -22.291 -19.085 39.899 -2.348 -2.676 -0.972 H2    875 38 
875 H3    H3  H 0 1 N N N -22.751 -18.584 41.561 -2.152 -3.899 0.307  H3    875 39 
875 H4    H4  H 0 1 N N N -23.333 -21.039 40.148 -2.746 -2.135 2.008  H4    875 40 
875 H5    H5  H 0 1 N N N -25.720 -19.655 39.917 -4.499 -3.409 0.051  H5    875 41 
875 H6    H6  H 0 1 N N N -26.616 -21.798 40.335 -5.875 -3.465 2.004  H6    875 42 
875 H7    H7  H 0 1 N N N -25.861 -19.118 42.329 -5.425 -1.409 -0.763 H7    875 43 
875 H8    H8  H 0 1 N N N -27.395 -20.677 43.125 -7.142 -2.146 0.776  H8    875 44 
875 H9    H9  H 0 1 N N N -24.996 -21.978 42.976 -4.606 0.007  1.836  H9    875 45 
875 H10   H10 H 0 1 N N N -23.566 -18.435 43.605 -3.263 0.765  -1.644 H10   875 46 
875 H11   H11 H 0 1 N N N -25.315 -19.470 49.428 -5.713 4.829  -2.554 H11   875 47 
875 H12   H12 H 0 1 N N N -23.948 -18.983 48.680 -6.963 5.681  -1.822 H12   875 48 
875 H13   H13 H 0 1 N N N -26.653 -22.824 47.105 -8.088 3.312  1.909  H13   875 49 
875 H14   H14 H 0 1 N N N -31.575 -9.531  35.381 9.929  4.995  0.645  H14   875 50 
875 H15   H15 H 0 1 N N N -32.053 -9.617  36.940 8.334  5.252  1.041  H15   875 51 
875 H17   H17 H 0 1 N N N -31.543 -11.780 36.113 8.523  3.758  -0.867 H17   875 52 
875 H18   H18 H 0 1 N N N -29.902 -11.171 35.709 9.480  2.678  0.175  H18   875 53 
875 H19   H19 H 0 1 N N N -31.032 -12.065 38.297 6.605  3.563  0.692  H19   875 54 
875 H20   H20 H 0 1 N N N -29.714 -10.508 39.431 8.306  1.711  2.144  H20   875 55 
875 H21   H21 H 0 1 N N N -28.128 -11.534 37.987 7.782  0.872  -0.138 H21   875 56 
875 H22   H22 H 0 1 N N N -27.962 -13.253 36.418 6.081  2.723  -1.590 H22   875 57 
875 H23   H23 H 0 1 N N N -29.344 -14.268 38.320 4.907  1.757  0.378  H23   875 58 
875 H24   H24 H 0 1 N N N -29.658 -13.690 40.566 6.609  -0.095 1.830  H24   875 59 
875 H25   H25 H 0 1 N N N -27.569 -14.105 40.274 5.214  0.128  -1.510 H25   875 60 
875 H26   H26 H 0 1 N N N -26.914 -12.773 39.261 6.043  -0.971 -0.382 H26   875 61 
875 H27   H27 H 0 1 N N N -23.834 -13.721 38.496 4.315  -3.494 0.448  H27   875 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
875 N10   "C1'" SING N N 1  
875 "C1'" "C2'" SING N N 2  
875 "O3'" "C3'" SING N N 3  
875 O1P   P     DOUB N N 4  
875 "C3'" "C2'" SING N N 5  
875 "C3'" "C4'" SING N N 6  
875 "C2'" "O2'" SING N N 7  
875 "O5'" P     SING N N 8  
875 "O5'" "C5'" SING N N 9  
875 P     O2P   SING N N 10 
875 P     O3P   SING N N 11 
875 "C4'" "C5'" SING N N 12 
875 "C4'" "O4'" SING N N 13 
875 O5B   C5B   SING N N 14 
875 O5B   PA    SING N N 15 
875 O3P   PA    SING N N 16 
875 O3B   C3B   SING N N 17 
875 C5B   C4B   SING N N 18 
875 C3B   C4B   SING N N 19 
875 C3B   C2B   SING N N 20 
875 O2A   PA    DOUB N N 21 
875 C4B   O4B   SING N N 22 
875 PA    O1A   SING N N 23 
875 C2B   O2B   SING N N 24 
875 C2B   C1B   SING N N 25 
875 O4B   C1B   SING N N 26 
875 C1B   N9A   SING N N 27 
875 N9A   C8A   SING Y N 28 
875 N9A   C4A   SING Y N 29 
875 C8A   N7A   DOUB Y N 30 
875 C4A   N3A   DOUB Y N 31 
875 C4A   C5A   SING Y N 32 
875 N3A   C2A   SING Y N 33 
875 N7A   C5A   SING Y N 34 
875 C5A   C6A   DOUB Y N 35 
875 C2A   N1A   DOUB Y N 36 
875 C6A   N1A   SING Y N 37 
875 C6A   N6A   SING N N 38 
875 O1A   H1    SING N N 39 
875 C5B   H2    SING N N 40 
875 C5B   H3    SING N N 41 
875 C4B   H4    SING N N 42 
875 C3B   H5    SING N N 43 
875 O3B   H6    SING N N 44 
875 C2B   H7    SING N N 45 
875 O2B   H8    SING N N 46 
875 C1B   H9    SING N N 47 
875 C8A   H10   SING N N 48 
875 N6A   H11   SING N N 49 
875 N6A   H12   SING N N 50 
875 C2A   H13   SING N N 51 
875 N10   H14   SING N N 52 
875 N10   H15   SING N N 53 
875 "C1'" H17   SING N N 54 
875 "C1'" H18   SING N N 55 
875 "C2'" H19   SING N N 56 
875 "O2'" H20   SING N N 57 
875 "C3'" H21   SING N N 58 
875 "O3'" H22   SING N N 59 
875 "C4'" H23   SING N N 60 
875 "O4'" H24   SING N N 61 
875 "C5'" H25   SING N N 62 
875 "C5'" H26   SING N N 63 
875 O2P   H27   SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
875 InChI            InChI                1.03  "InChI=1S/C15H26N6O13P2/c16-1-6(22)10(24)7(23)2-31-35(27,28)34-36(29,30)32-3-8-11(25)12(26)15(33-8)21-5-20-9-13(17)18-4-19-14(9)21/h4-8,10-12,15,22-26H,1-3,16H2,(H,27,28)(H,29,30)(H2,17,18,19)/t6-,7+,8+,10-,11+,12+,15+/m0/s1" 
875 InChIKey         InChI                1.03  JFHZDRWPWXRIBP-AOOZFPJJSA-N                                                                                                                                                                                                       
875 SMILES_CANONICAL CACTVS               3.385 "NC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                               
875 SMILES           CACTVS               3.385 "NC[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                                       
875 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H]([C@H](CN)O)O)O)O)O)N"                                                                                                                            
875 SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(C(CN)O)O)O)O)O)N"                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           875 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-azanyl-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
875 "Create component" 2021-11-26 PDBJ 
875 "Initial release"  2022-11-23 RCSB 
# 
