data_B05
# 
_chem_comp.id                                    B05 
_chem_comp.name                                  "N-[2-(benzyloxy)phenyl]-3-nitrobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H16 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.352 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B05 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DV3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B05 OAB O1  O 0  1 N N N N N N -18.063 19.116 -28.469 -6.392 -0.152 0.845  OAB B05 1  
B05 OAC O2  O -1 1 N N N N N N -18.533 18.201 -26.313 -6.757 1.812  0.167  OAC B05 2  
B05 CAZ C1  C 0  1 Y N N N N N -21.496 20.940 -25.814 -2.355 0.089  -0.195 CAZ B05 3  
B05 CAK C2  C 0  1 Y N N N N N -24.244 26.411 -24.360 4.444  1.710  1.372  CAK B05 4  
B05 CAJ C3  C 0  1 Y N N N N N -25.875 24.876 -25.185 4.704  1.704  -1.008 CAJ B05 5  
B05 CAI C4  C 0  1 Y N N N N N -22.373 22.604 -19.718 2.441  -4.184 -0.035 CAI B05 6  
B05 NBA N1  N 1  1 N N N N N N -18.809 19.091 -27.326 -5.989 0.884  0.347  NBA B05 7  
B05 CAY C5  C 0  1 Y N N N N N -22.817 23.378 -21.929 2.109  -1.810 -0.077 CAY B05 8  
B05 CAX C6  C 0  1 Y N N N N N -22.281 22.208 -22.434 0.738  -2.007 -0.227 CAX B05 9  
B05 CAW C7  C 0  1 Y N N N N N -19.852 19.958 -27.193 -4.566 1.016  -0.037 CAW B05 10 
B05 CAV C8  C 0  1 Y N N N N N -21.980 21.681 -26.878 -1.900 1.282  -0.758 CAV B05 11 
B05 CAU C9  C 0  1 Y N N N N N -24.948 25.235 -24.228 4.403  1.037  0.165  CAU B05 12 
B05 CAT C10 C 0  1 N N N N N N -22.019 20.963 -24.427 -1.419 -1.034 0.023  CAT B05 13 
B05 CAQ C11 C 0  1 N N N N N N -24.688 24.357 -23.040 4.030  -0.422 0.128  CAQ B05 14 
B05 CAP C12 C 0  1 Y N N N N N -20.447 20.081 -25.981 -3.697 -0.036 0.168  CAP B05 15 
B05 CAO C13 C 0  1 Y N N N N N -22.861 23.567 -20.571 2.957  -2.902 0.018  CAO B05 16 
B05 CAN C14 C 0  1 Y N N N N N -20.296 20.681 -28.256 -4.109 2.194  -0.602 CAN B05 17 
B05 CAM C15 C 0  1 Y N N N N N -21.359 21.543 -28.094 -2.779 2.327  -0.959 CAM B05 18 
B05 CAL C16 C 0  1 Y N N N N N -21.751 21.265 -21.603 0.229  -3.297 -0.285 CAL B05 19 
B05 OAA O3  O 0  1 N N N N N N -22.217 19.918 -23.905 -1.819 -2.072 0.514  OAA B05 20 
B05 NAR N2  N 0  1 N N N N N N -22.209 22.084 -23.783 -0.123 -0.907 -0.324 NAR B05 21 
B05 CAH C17 C 0  1 Y N N N N N -21.818 21.462 -20.240 1.082  -4.380 -0.189 CAH B05 22 
B05 OAS O4  O 0  1 N N N N N N -23.278 24.342 -22.777 2.615  -0.548 -0.025 OAS B05 23 
B05 CAF C18 C 0  1 Y N N N N N -26.086 25.701 -26.267 5.047  3.042  -0.974 CAF B05 24 
B05 CAE C19 C 0  1 Y N N N N N -25.379 26.876 -26.392 5.077  3.718  0.232  CAE B05 25 
B05 CAG C20 C 0  1 Y N N N N N -24.454 27.242 -25.443 4.781  3.050  1.406  CAG B05 26 
B05 H1  H1  H 0  1 N N N N N N -23.519 26.687 -23.608 4.209  1.189  2.289  H1  B05 27 
B05 H2  H2  H 0  1 N N N N N N -26.431 23.955 -25.086 4.672  1.178  -1.951 H2  B05 28 
B05 H3  H3  H 0  1 N N N N N N -22.426 22.745 -18.649 3.104  -5.034 0.039  H3  B05 29 
B05 H4  H4  H 0  1 N N N N N N -22.821 22.348 -26.755 -0.862 1.388  -1.037 H4  B05 30 
B05 H5  H5  H 0  1 N N N N N N -25.223 24.752 -22.164 4.531  -0.904 -0.711 H5  B05 31 
B05 H6  H6  H 0  1 N N N N N N -25.036 23.335 -23.252 4.338  -0.900 1.059  H6  B05 32 
B05 H7  H7  H 0  1 N N N N N N -20.090 19.498 -25.145 -4.055 -0.955 0.609  H7  B05 33 
B05 H8  H8  H 0  1 N N N N N N -23.281 24.477 -20.169 4.020  -2.752 0.135  H8  B05 34 
B05 H9  H9  H 0  1 N N N N N N -19.819 20.580 -29.220 -4.793 3.014  -0.761 H9  B05 35 
B05 H10 H10 H 0  1 N N N N N N -21.709 22.119 -28.938 -2.429 3.249  -1.399 H10 B05 36 
B05 H11 H11 H 0  1 N N N N N N -21.286 20.378 -22.007 -0.833 -3.453 -0.401 H11 B05 37 
B05 H12 H12 H 0  1 N N N N N N -22.309 22.917 -24.328 0.213  -0.054 -0.641 H12 B05 38 
B05 H13 H13 H 0  1 N N N N N N -21.428 20.707 -19.573 0.684  -5.384 -0.234 H13 B05 39 
B05 H14 H14 H 0  1 N N N N N N -26.809 25.425 -27.021 5.282  3.563  -1.891 H14 B05 40 
B05 H15 H15 H 0  1 N N N N N N -25.553 27.516 -27.244 5.344  4.764  0.258  H15 B05 41 
B05 H16 H16 H 0  1 N N N N N N -23.901 28.164 -25.543 4.814  3.576  2.349  H16 B05 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B05 OAB NBA DOUB N N 1  
B05 CAN CAM DOUB Y N 2  
B05 CAN CAW SING Y N 3  
B05 CAM CAV SING Y N 4  
B05 NBA CAW SING N N 5  
B05 NBA OAC SING N N 6  
B05 CAW CAP DOUB Y N 7  
B05 CAV CAZ DOUB Y N 8  
B05 CAE CAF DOUB Y N 9  
B05 CAE CAG SING Y N 10 
B05 CAF CAJ SING Y N 11 
B05 CAP CAZ SING Y N 12 
B05 CAZ CAT SING N N 13 
B05 CAG CAK DOUB Y N 14 
B05 CAJ CAU DOUB Y N 15 
B05 CAT OAA DOUB N N 16 
B05 CAT NAR SING N N 17 
B05 CAK CAU SING Y N 18 
B05 CAU CAQ SING N N 19 
B05 NAR CAX SING N N 20 
B05 CAQ OAS SING N N 21 
B05 OAS CAY SING N N 22 
B05 CAX CAY DOUB Y N 23 
B05 CAX CAL SING Y N 24 
B05 CAY CAO SING Y N 25 
B05 CAL CAH DOUB Y N 26 
B05 CAO CAI DOUB Y N 27 
B05 CAH CAI SING Y N 28 
B05 CAK H1  SING N N 29 
B05 CAJ H2  SING N N 30 
B05 CAI H3  SING N N 31 
B05 CAV H4  SING N N 32 
B05 CAQ H5  SING N N 33 
B05 CAQ H6  SING N N 34 
B05 CAP H7  SING N N 35 
B05 CAO H8  SING N N 36 
B05 CAN H9  SING N N 37 
B05 CAM H10 SING N N 38 
B05 CAL H11 SING N N 39 
B05 NAR H12 SING N N 40 
B05 CAH H13 SING N N 41 
B05 CAF H14 SING N N 42 
B05 CAE H15 SING N N 43 
B05 CAG H16 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B05 SMILES           ACDLabs              12.01 "O=[N+]([O-])c3cc(C(=O)Nc1c(cccc1)OCc2ccccc2)ccc3"                                                                         
B05 InChI            InChI                1.03  "InChI=1S/C20H16N2O4/c23-20(16-9-6-10-17(13-16)22(24)25)21-18-11-4-5-12-19(18)26-14-15-7-2-1-3-8-15/h1-13H,14H2,(H,21,23)" 
B05 InChIKey         InChI                1.03  LWRSEQLBQHKFTL-UHFFFAOYSA-N                                                                                                
B05 SMILES_CANONICAL CACTVS               3.385 "[O-][N+](=O)c1cccc(c1)C(=O)Nc2ccccc2OCc3ccccc3"                                                                           
B05 SMILES           CACTVS               3.385 "[O-][N+](=O)c1cccc(c1)C(=O)Nc2ccccc2OCc3ccccc3"                                                                           
B05 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COc2ccccc2NC(=O)c3cccc(c3)[N+](=O)[O-]"                                                                         
B05 SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COc2ccccc2NC(=O)c3cccc(c3)[N+](=O)[O-]"                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B05 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-(benzyloxy)phenyl]-3-nitrobenzamide"   
B05 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "3-nitro-N-(2-phenylmethoxyphenyl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B05 "Create component" 2015-09-29 PDBJ 
B05 "Initial release"  2016-09-21 RCSB 
B05 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            B05 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAV 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
