data_KM5
#

_chem_comp.id                                   KM5
_chem_comp.name                                 "methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-ethyl-amino]phenyl]carbonylpiperidine-4-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H28 N8 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-07
_chem_comp.pdbx_modified_date                   2020-07-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       464.520
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KM5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RX0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KM5  CAO  C1   C  0  1  Y  N  N   7.318  -18.109  15.972   0.120  -2.856   0.887  CAO  KM5   1  
KM5  CAS  C2   C  0  1  Y  N  N   6.108  -17.402  15.885   1.207  -2.533   0.079  CAS  KM5   2  
KM5  CAT  C3   C  0  1  Y  N  N   7.727  -18.790  17.115  -1.162  -2.659   0.428  CAT  KM5   3  
KM5  CAU  C4   C  0  1  Y  N  N   6.966  -18.783  18.267  -1.373  -2.128  -0.848  CAU  KM5   4  
KM5  CAV  C5   C  0  1  N  N  N   8.975  -20.145  21.137  -5.088  -1.313  -0.955  CAV  KM5   5  
KM5  CBG  C6   C  0  1  N  N  N  14.753  -19.066  21.659  -7.542   3.618   0.896  CBG  KM5   6  
KM5  OBE  O1   O  0  1  N  N  N  13.658  -19.106  20.741  -7.128   2.244   0.679  OBE  KM5   7  
KM5  CBD  C7   C  0  1  N  N  N  12.593  -19.722  21.314  -5.836   1.954   0.897  CBD  KM5   8  
KM5  OBF  O2   O  0  1  N  N  N  12.585  -20.170  22.462  -5.076   2.821   1.258  OBF  KM5   9  
KM5  CAZ  C8   C  0  1  N  N  N  11.342  -19.778  20.437  -5.334   0.548   0.692  CAZ  KM5  10  
KM5  CBA  C9   C  0  1  N  N  N  10.356  -20.765  21.045  -5.568   0.129  -0.761  CBA  KM5  11  
KM5  CAY  C10  C  0  1  N  N  N  10.779  -18.434  20.455  -3.837   0.490   1.007  CAY  KM5  12  
KM5  CAX  C11  C  0  1  N  N  N   9.690  -18.360  19.498  -3.335  -0.952   0.831  CAX  KM5  13  
KM5  NAW  N1   N  0  1  N  N  N   8.664  -19.359  19.917  -3.688  -1.412  -0.519  NAW  KM5  14  
KM5  CBB  C12  C  0  1  N  N  N   7.410  -19.483  19.424  -2.747  -1.915  -1.342  CBB  KM5  15  
KM5  OBC  O3   O  0  1  N  N  N   6.629  -20.284  19.939  -3.029  -2.193  -2.491  OBC  KM5  16  
KM5  CAQ  C13  C  0  1  Y  N  N   5.747  -18.084  18.219  -0.280  -1.800  -1.654  CAQ  KM5  17  
KM5  CAR  C14  C  0  1  Y  N  N   5.320  -17.404  17.066   1.000  -2.009  -1.194  CAR  KM5  18  
KM5  N10  N2   N  0  1  N  N  N   5.767  -16.727  14.728   2.501  -2.734   0.545  N10  KM5  19  
KM5  CAP  C15  C  0  1  N  N  N   4.524  -15.924  14.566   2.721  -3.285   1.885  CAP  KM5  20  
KM5  CBH  C16  C  0  1  N  N  N   3.329  -16.818  14.274   2.787  -4.811   1.804  CBH  KM5  21  
KM5  C9   C17  C  0  1  N  N  N   6.648  -16.710  13.545   3.646  -2.395  -0.304  C9   KM5  22  
KM5  C6   C18  C  0  1  Y  N  N   7.767  -15.817  13.687   4.049  -0.964  -0.056  C6   KM5  23  
KM5  N5   N3   N  0  1  Y  N  N   7.592  -14.583  14.255   3.439   0.006  -0.703  N5   KM5  24  
KM5  C4A  C19  C  0  1  Y  N  N   8.647  -13.728  14.363   3.796   1.267  -0.482  C4A  KM5  25  
KM5  C4   C20  C  0  1  Y  N  N   8.529  -12.444  14.964   3.156   2.389  -1.171  C4   KM5  26  
KM5  N4   N4   N  0  1  N  N  N   7.326  -12.036  15.369   2.147   2.182  -2.086  N4   KM5  27  
KM5  N3   N5   N  0  1  Y  N  N   9.620  -11.644  15.074   3.582   3.612  -0.885  N3   KM5  28  
KM5  C2   C21  C  0  1  Y  N  N  10.823  -12.050  14.627   4.556   3.815  -0.003  C2   KM5  29  
KM5  N2   N6   N  0  1  N  N  N  11.847  -11.246  14.775   4.950   5.115   0.249  N2   KM5  30  
KM5  N1   N7   N  0  1  Y  N  N  10.972  -13.276  14.117   5.164   2.841   0.645  N1   KM5  31  
KM5  C8A  C22  C  0  1  Y  N  N   9.925  -14.141  13.961   4.827   1.561   0.445  C8A  KM5  32  
KM5  N8   N8   N  0  1  Y  N  N  10.132  -15.354  13.407   5.432   0.562   1.091  N8   KM5  33  
KM5  C7   C23  C  0  1  Y  N  N   9.059  -16.212  13.253   5.060  -0.680   0.862  C7   KM5  34  
KM5  H1   H1   H  0  1  N  N  N   7.965  -18.125  15.107   0.283  -3.266   1.872  H1   KM5  35  
KM5  H2   H2   H  0  1  N  N  N   8.659  -19.335  17.100  -2.005  -2.914   1.054  H2   KM5  36  
KM5  H3   H3   H  0  1  N  N  N   8.936  -19.481  22.013  -5.704  -1.987  -0.360  H3   KM5  37  
KM5  H4   H4   H  0  1  N  N  N   8.228  -20.945  21.250  -5.162  -1.584  -2.008  H4   KM5  38  
KM5  H5   H5   H  0  1  N  N  N  15.611  -18.565  21.186  -6.978   4.276   0.235  H5   KM5  39  
KM5  H6   H6   H  0  1  N  N  N  14.456  -18.510  22.560  -8.607   3.716   0.685  H6   KM5  40  
KM5  H7   H7   H  0  1  N  N  N  15.035  -20.092  21.938  -7.351   3.896   1.933  H7   KM5  41  
KM5  H8   H8   H  0  1  N  N  N  11.608  -20.085  19.415  -5.871  -0.130   1.356  H8   KM5  42  
KM5  H9   H9   H  0  1  N  N  N  10.308  -21.665  20.414  -5.010   0.790  -1.425  H9   KM5  43  
KM5  H10  H10  H  0  1  N  N  N  10.696  -21.043  22.053  -6.631   0.192  -0.992  H10  KM5  44  
KM5  H11  H11  H  0  1  N  N  N  11.557  -17.705  20.184  -3.297   1.148   0.327  H11  KM5  45  
KM5  H12  H12  H  0  1  N  N  N  10.400  -18.207  21.462  -3.669   0.812   2.035  H12  KM5  46  
KM5  H13  H13  H  0  1  N  N  N  10.058  -18.599  18.489  -2.252  -0.983   0.955  H13  KM5  47  
KM5  H14  H14  H  0  1  N  N  N   9.255  -17.350  19.500  -3.808  -1.597   1.572  H14  KM5  48  
KM5  H15  H15  H  0  1  N  N  N   5.118  -18.069  19.097  -0.439  -1.390  -2.641  H15  KM5  49  
KM5  H16  H16  H  0  1  N  N  N   4.378  -16.875  17.078   1.846  -1.759  -1.818  H16  KM5  50  
KM5  H17  H17  H  0  1  N  N  N   4.658  -15.219  13.732   3.658  -2.901   2.286  H17  KM5  51  
KM5  H18  H18  H  0  1  N  N  N   4.335  -15.363  15.493   1.898  -2.991   2.537  H18  KM5  52  
KM5  H19  H19  H  0  1  N  N  N   2.427  -16.199  14.159   1.849  -5.195   1.402  H19  KM5  53  
KM5  H20  H20  H  0  1  N  N  N   3.509  -17.379  13.345   3.609  -5.105   1.151  H20  KM5  54  
KM5  H21  H21  H  0  1  N  N  N   3.187  -17.523  15.106   2.950  -5.221   2.801  H21  KM5  55  
KM5  H22  H22  H  0  1  N  N  N   6.057  -16.394  12.673   4.482  -3.053  -0.067  H22  KM5  56  
KM5  H23  H23  H  0  1  N  N  N   7.031  -17.728  13.379   3.372  -2.518  -1.351  H23  KM5  57  
KM5  H24  H24  H  0  1  N  N  N   7.394  -11.108  15.734   1.848   1.281  -2.283  H24  KM5  58  
KM5  H25  H25  H  0  1  N  N  N   6.693  -12.044  14.595   1.735   2.938  -2.533  H25  KM5  59  
KM5  H26  H26  H  0  1  N  N  N  12.678  -11.702  14.456   4.519   5.851  -0.213  H26  KM5  60  
KM5  H27  H27  H  0  1  N  N  N  11.697  -10.414  14.241   5.658   5.292   0.888  H27  KM5  61  
KM5  H28  H28  H  0  1  N  N  N   9.204  -17.183  12.802   5.549  -1.489   1.384  H28  KM5  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KM5  C7   N8   DOUB  Y  N   1  
KM5  C7   C6   SING  Y  N   2  
KM5  N8   C8A  SING  Y  N   3  
KM5  C9   C6   SING  N  N   4  
KM5  C9   N10  SING  N  N   5  
KM5  C6   N5   DOUB  Y  N   6  
KM5  C8A  N1   DOUB  Y  N   7  
KM5  C8A  C4A  SING  Y  N   8  
KM5  N1   C2   SING  Y  N   9  
KM5  N5   C4A  SING  Y  N  10  
KM5  CBH  CAP  SING  N  N  11  
KM5  C4A  C4   DOUB  Y  N  12  
KM5  CAP  N10  SING  N  N  13  
KM5  C2   N2   SING  N  N  14  
KM5  C2   N3   DOUB  Y  N  15  
KM5  N10  CAS  SING  N  N  16  
KM5  C4   N3   SING  Y  N  17  
KM5  C4   N4   SING  N  N  18  
KM5  CAS  CAO  DOUB  Y  N  19  
KM5  CAS  CAR  SING  Y  N  20  
KM5  CAO  CAT  SING  Y  N  21  
KM5  CAR  CAQ  DOUB  Y  N  22  
KM5  CAT  CAU  DOUB  Y  N  23  
KM5  CAQ  CAU  SING  Y  N  24  
KM5  CAU  CBB  SING  N  N  25  
KM5  CBB  NAW  SING  N  N  26  
KM5  CBB  OBC  DOUB  N  N  27  
KM5  CAX  NAW  SING  N  N  28  
KM5  CAX  CAY  SING  N  N  29  
KM5  NAW  CAV  SING  N  N  30  
KM5  CAZ  CAY  SING  N  N  31  
KM5  CAZ  CBA  SING  N  N  32  
KM5  CAZ  CBD  SING  N  N  33  
KM5  OBE  CBD  SING  N  N  34  
KM5  OBE  CBG  SING  N  N  35  
KM5  CBA  CAV  SING  N  N  36  
KM5  CBD  OBF  DOUB  N  N  37  
KM5  CAO  H1   SING  N  N  38  
KM5  CAT  H2   SING  N  N  39  
KM5  CAV  H3   SING  N  N  40  
KM5  CAV  H4   SING  N  N  41  
KM5  CBG  H5   SING  N  N  42  
KM5  CBG  H6   SING  N  N  43  
KM5  CBG  H7   SING  N  N  44  
KM5  CAZ  H8   SING  N  N  45  
KM5  CBA  H9   SING  N  N  46  
KM5  CBA  H10  SING  N  N  47  
KM5  CAY  H11  SING  N  N  48  
KM5  CAY  H12  SING  N  N  49  
KM5  CAX  H13  SING  N  N  50  
KM5  CAX  H14  SING  N  N  51  
KM5  CAQ  H15  SING  N  N  52  
KM5  CAR  H16  SING  N  N  53  
KM5  CAP  H17  SING  N  N  54  
KM5  CAP  H18  SING  N  N  55  
KM5  CBH  H19  SING  N  N  56  
KM5  CBH  H20  SING  N  N  57  
KM5  CBH  H21  SING  N  N  58  
KM5  C9   H22  SING  N  N  59  
KM5  C9   H23  SING  N  N  60  
KM5  N4   H24  SING  N  N  61  
KM5  N4   H25  SING  N  N  62  
KM5  N2   H26  SING  N  N  63  
KM5  N2   H27  SING  N  N  64  
KM5  C7   H28  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KM5  InChI             InChI                 1.03   "InChI=1S/C23H28N8O3/c1-3-30(13-16-12-26-20-18(27-16)19(24)28-23(25)29-20)17-6-4-14(5-7-17)21(32)31-10-8-15(9-11-31)22(33)34-2/h4-7,12,15H,3,8-11,13H2,1-2H3,(H4,24,25,26,28,29)"  
KM5  InChIKey          InChI                 1.03   OTZWZUHDCONCKN-UHFFFAOYSA-N  
KM5  SMILES_CANONICAL  CACTVS                3.385  "CCN(Cc1cnc2nc(N)nc(N)c2n1)c3ccc(cc3)C(=O)N4CCC(CC4)C(=O)OC"  
KM5  SMILES            CACTVS                3.385  "CCN(Cc1cnc2nc(N)nc(N)c2n1)c3ccc(cc3)C(=O)N4CCC(CC4)C(=O)OC"  
KM5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN(Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)N4CCC(CC4)C(=O)OC"  
KM5  SMILES            "OpenEye OEToolkits"  2.0.7  "CCN(Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)N4CCC(CC4)C(=O)OC"  
#
_pdbx_chem_comp_identifier.comp_id          KM5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-ethyl-amino]phenyl]carbonylpiperidine-4-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KM5  "Create component"  2019-06-07  PDBE  
KM5  "Initial release"   2020-07-15  RCSB  
##
