data_PH5
#

_chem_comp.id                                   PH5
_chem_comp.name                                 "benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C19 H27 N O9"
_chem_comp.mon_nstd_parent_comp_id              SIA
_chem_comp.pdbx_synonyms                        
;2-PHENYL-PROP5AC; benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; benzyl
3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosidonic acid; benzyl
3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosidonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-06-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.419
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PH5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2BVE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  PH5  2-PHENYL-PROP5AC                                                                         PDB  ?  
2  PH5  "benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosidonic acid"  PDB  ?  
3  PH5  "benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosidonic acid"        PDB  ?  
4  PH5  "benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosidonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PH5  C1    C1    C  0  1  N  N  N  17.859  37.113  32.530  -0.572  -1.093  -1.724  C1    PH5   1  
PH5  O1A   O1A   O  0  1  N  N  N  17.184  36.322  33.201  -0.268  -2.084  -2.345  O1A   PH5   2  
PH5  O1B   O1B   O  0  1  N  N  N  17.378  37.771  31.578  -0.823   0.054  -2.372  O1B   PH5   3  
PH5  C2    C2    C  0  1  N  N  R  19.320  37.353  32.926  -0.668  -1.146  -0.221  C2    PH5   4  
PH5  O2    O2    O  0  1  N  N  N  19.351  38.281  33.973  -2.024  -1.390   0.160  O2    PH5   5  
PH5  C3    C3    C  0  1  N  N  N  19.958  36.047  33.407   0.220  -2.275   0.307  C3    PH5   6  
PH5  C4    C4    C  0  1  N  N  S  20.177  35.048  32.265   1.665  -2.022  -0.135  C4    PH5   7  
PH5  O4    O4    O  0  1  N  N  N  20.926  33.927  32.723   2.531  -2.983   0.472  O4    PH5   8  
PH5  C5    C5    C  0  1  N  N  R  20.892  35.691  31.067   2.073  -0.611   0.305  C5    PH5   9  
PH5  N5    N5    N  0  1  N  N  N  20.919  34.701  29.999   3.395  -0.291  -0.239  N5    PH5  10  
PH5  C10   C10   C  0  1  N  N  N  22.015  34.488  29.277   4.506  -0.673   0.421  C10   PH5  11  
PH5  O10   O10   O  0  1  N  N  N  23.056  35.124  29.407   4.412  -1.282   1.465  O10   PH5  12  
PH5  C11   C11   C  0  1  N  N  N  21.915  33.398  28.248   5.866  -0.343  -0.139  C11   PH5  13  
PH5  C12   C12   C  0  1  N  N  N  22.649  32.183  28.754   6.948  -0.886   0.796  C12   PH5  14  
PH5  C6    C6    C  0  1  N  N  R  20.105  36.941  30.654   1.045   0.393  -0.220  C6    PH5  15  
PH5  O6    O6    O  0  1  N  N  N  20.002  37.848  31.775  -0.240   0.100   0.325  O6    PH5  16  
PH5  C7    C7    C  0  1  N  N  R  20.738  37.690  29.463   1.460   1.808   0.188  C7    PH5  17  
PH5  O7    O7    O  0  1  N  N  N  22.082  38.023  29.761   1.628   1.865   1.606  O7    PH5  18  
PH5  C8    C8    C  0  1  N  N  R  19.962  38.989  29.178   0.376   2.800  -0.237  C8    PH5  19  
PH5  O8    O8    O  0  1  N  N  N  18.567  38.740  29.243   0.207   2.744  -1.654  O8    PH5  20  
PH5  C9    C9    C  0  1  N  N  N  20.334  39.534  27.792   0.790   4.215   0.172  C9    PH5  21  
PH5  O9    O9    O  0  1  N  N  N  19.782  40.829  27.603  -0.272   5.126  -0.119  O9    PH5  22  
PH5  CB    CB    C  0  1  N  N  N  19.161  39.618  33.593  -2.779  -0.246  -0.244  CB    PH5  23  
PH5  CG    CG    C  0  1  Y  N  N  19.684  40.600  34.592  -4.198  -0.383   0.244  CG    PH5  24  
PH5  CD1   CD1   C  0  1  Y  N  N  18.878  41.038  35.644  -4.552   0.110   1.486  CD1   PH5  25  
PH5  CD2   CD2   C  0  1  Y  N  N  20.974  41.083  34.487  -5.147  -0.996  -0.552  CD2   PH5  26  
PH5  CE1   CE1   C  0  1  Y  N  N  19.351  41.949  36.573  -5.854  -0.016   1.934  CE1   PH5  27  
PH5  CE2   CE2   C  0  1  Y  N  N  21.466  41.996  35.408  -6.448  -1.125  -0.103  CE2   PH5  28  
PH5  CZ    CZ    C  0  1  Y  N  N  20.656  42.435  36.458  -6.802  -0.634   1.140  CZ    PH5  29  
PH5  HO1B  H1B   H  0  0  N  N  N  16.457  37.559  31.479  -0.761   0.088  -3.337  HO1B  PH5  30  
PH5  H32   H3C1  H  0  1  N  N  N  19.273  35.584  34.132  -0.123  -3.228  -0.097  H32   PH5  31  
PH5  H31   H3C2  H  0  1  N  N  N  20.934  36.281  33.858   0.170  -2.300   1.396  H31   PH5  32  
PH5  H4    H4    H  0  1  N  N  N  19.183  34.717  31.929   1.735  -2.101  -1.220  H4    PH5  33  
PH5  HO4   HA    H  0  1  N  Y  N  21.093  33.339  31.996   2.240  -3.853   0.169  HO4   PH5  34  
PH5  H5    H5    H  0  1  N  N  N  21.922  35.995  31.306   2.105  -0.564   1.394  H5    PH5  35  
PH5  HN5   HB    H  0  1  N  N  N  20.095  34.169  29.804   3.470   0.197  -1.074  HN5   PH5  36  
PH5  H111  H111  H  0  0  N  N  N  22.361  33.736  27.301   5.970   0.739  -0.226  H111  PH5  37  
PH5  H113  H112  H  0  0  N  N  N  20.858  33.147  28.075   5.974  -0.799  -1.123  H113  PH5  38  
PH5  H121  H121  H  0  0  N  N  N  22.043  31.683  29.524   6.840  -0.430   1.781  H121  PH5  39  
PH5  H122  H122  H  0  0  N  N  N  23.612  32.491  29.188   6.843  -1.967   0.884  H122  PH5  40  
PH5  H123  H123  H  0  0  N  N  N  22.828  31.488  27.920   7.931  -0.647   0.392  H123  PH5  41  
PH5  H6    H6    H  0  1  N  N  N  19.111  36.594  30.336   1.001   0.328  -1.307  H6    PH5  42  
PH5  H7    H7    H  0  1  N  N  N  20.700  37.034  28.581   2.400   2.066  -0.300  H7    PH5  43  
PH5  HO7   HC    H  0  1  N  Y  N  22.577  38.098  28.953   0.776   1.630   1.998  HO7   PH5  44  
PH5  H8    H8    H  0  1  N  N  N  20.230  39.739  29.937  -0.564   2.542   0.252  H8    PH5  45  
PH5  HO8   HD    H  0  1  N  Y  N  18.297  38.684  30.152   1.059   2.978  -2.047  HO8   PH5  46  
PH5  H92   H9C1  H  0  1  N  N  N  19.931  38.859  27.023   1.005   4.237   1.240  H92   PH5  47  
PH5  H91   H9C2  H  0  1  N  N  N  21.429  39.593  27.710   1.682   4.507  -0.384  H91   PH5  48  
PH5  HO9   H9    H  0  1  N  Y  N  19.659  41.247  28.447   0.030   6.003   0.153  HO9   PH5  49  
PH5  HBC1  HBC1  H  0  0  N  N  N  18.077  39.783  33.510  -2.333   0.652   0.182  HBC1  PH5  50  
PH5  HBC2  HBC2  H  0  0  N  N  N  19.688  39.783  32.642  -2.774  -0.174  -1.331  HBC2  PH5  51  
PH5  HD1   HD1   H  0  1  N  N  N  17.870  40.661  35.735  -3.812   0.592   2.107  HD1   PH5  52  
PH5  HD2   HD2   H  0  1  N  N  N  21.606  40.746  33.679  -4.870  -1.380  -1.523  HD2   PH5  53  
PH5  HE1   HE1   H  0  1  N  N  N  18.716  42.282  37.381  -6.130   0.368   2.905  HE1   PH5  54  
PH5  HE2   HE2   H  0  1  N  N  N  22.476  42.368  35.313  -7.188  -1.608  -0.723  HE2   PH5  55  
PH5  HZ    HZ    H  0  1  N  N  N  21.036  43.146  37.177  -7.818  -0.732   1.490  HZ    PH5  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PH5  C1   O1A   DOUB  N  N   1  
PH5  C1   O1B   SING  N  N   2  
PH5  C1   C2    SING  N  N   3  
PH5  O1B  HO1B  SING  N  N   4  
PH5  C2   O2    SING  N  N   5  
PH5  C2   C3    SING  N  N   6  
PH5  C2   O6    SING  N  N   7  
PH5  O2   CB    SING  N  N   8  
PH5  C3   C4    SING  N  N   9  
PH5  C3   H32   SING  N  N  10  
PH5  C3   H31   SING  N  N  11  
PH5  C4   O4    SING  N  N  12  
PH5  C4   C5    SING  N  N  13  
PH5  C4   H4    SING  N  N  14  
PH5  O4   HO4   SING  N  N  15  
PH5  C5   N5    SING  N  N  16  
PH5  C5   C6    SING  N  N  17  
PH5  C5   H5    SING  N  N  18  
PH5  N5   C10   SING  N  N  19  
PH5  N5   HN5   SING  N  N  20  
PH5  C10  O10   DOUB  N  N  21  
PH5  C10  C11   SING  N  N  22  
PH5  C11  C12   SING  N  N  23  
PH5  C11  H111  SING  N  N  24  
PH5  C11  H113  SING  N  N  25  
PH5  C12  H121  SING  N  N  26  
PH5  C12  H122  SING  N  N  27  
PH5  C12  H123  SING  N  N  28  
PH5  C6   O6    SING  N  N  29  
PH5  C6   C7    SING  N  N  30  
PH5  C6   H6    SING  N  N  31  
PH5  C7   O7    SING  N  N  32  
PH5  C7   C8    SING  N  N  33  
PH5  C7   H7    SING  N  N  34  
PH5  O7   HO7   SING  N  N  35  
PH5  C8   O8    SING  N  N  36  
PH5  C8   C9    SING  N  N  37  
PH5  C8   H8    SING  N  N  38  
PH5  O8   HO8   SING  N  N  39  
PH5  C9   O9    SING  N  N  40  
PH5  C9   H92   SING  N  N  41  
PH5  C9   H91   SING  N  N  42  
PH5  O9   HO9   SING  N  N  43  
PH5  CB   CG    SING  N  N  44  
PH5  CB   HBC1  SING  N  N  45  
PH5  CB   HBC2  SING  N  N  46  
PH5  CG   CD1   DOUB  Y  N  47  
PH5  CG   CD2   SING  Y  N  48  
PH5  CD1  CE1   SING  Y  N  49  
PH5  CD1  HD1   SING  N  N  50  
PH5  CD2  CE2   DOUB  Y  N  51  
PH5  CD2  HD2   SING  N  N  52  
PH5  CE1  CZ    DOUB  Y  N  53  
PH5  CE1  HE1   SING  N  N  54  
PH5  CE2  CZ    SING  Y  N  55  
PH5  CE2  HE2   SING  N  N  56  
PH5  CZ   HZ    SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PH5  SMILES            ACDLabs               10.04  "O=C(O)C2(OCc1ccccc1)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C2"  
PH5  SMILES_CANONICAL  CACTVS                3.341  "CCC(=O)N[C@@H]1[C@@H](O)C[C@@](OCc2ccccc2)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O"  
PH5  SMILES            CACTVS                3.341  "CCC(=O)N[CH]1[CH](O)C[C](OCc2ccccc2)(O[CH]1[CH](O)[CH](O)CO)C(O)=O"  
PH5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OCc2ccccc2)O"  
PH5  SMILES            "OpenEye OEToolkits"  1.5.0  "CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)OCc2ccccc2)O"  
PH5  InChI             InChI                 1.03   "InChI=1S/C19H27NO9/c1-2-14(24)20-15-12(22)8-19(18(26)27,28-10-11-6-4-3-5-7-11)29-17(15)16(25)13(23)9-21/h3-7,12-13,15-17,21-23,25H,2,8-10H2,1H3,(H,20,24)(H,26,27)/t12-,13+,15+,16+,17+,19+/m0/s1"  
PH5  InChIKey          InChI                 1.03   XDURJXFZCXMSHL-YZKZVDITSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PH5  "SYSTEMATIC NAME"  ACDLabs               10.04  "benzyl 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  
PH5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,4S,5R,6R)-4-hydroxy-2-phenylmethoxy-5-(propanoylamino)-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid"  
#
_pdbx_chem_comp_related.comp_id            PH5
_pdbx_chem_comp_related.related_comp_id    SIA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  PH5  C1    SIA  C1    "Carbohydrate core"  
 2  PH5  C10   SIA  C10   "Carbohydrate core"  
 3  PH5  C11   SIA  C11   "Carbohydrate core"  
 4  PH5  C2    SIA  C2    "Carbohydrate core"  
 5  PH5  C3    SIA  C3    "Carbohydrate core"  
 6  PH5  C4    SIA  C4    "Carbohydrate core"  
 7  PH5  C5    SIA  C5    "Carbohydrate core"  
 8  PH5  C6    SIA  C6    "Carbohydrate core"  
 9  PH5  C7    SIA  C7    "Carbohydrate core"  
10  PH5  C8    SIA  C8    "Carbohydrate core"  
11  PH5  C9    SIA  C9    "Carbohydrate core"  
12  PH5  N5    SIA  N5    "Carbohydrate core"  
13  PH5  O10   SIA  O10   "Carbohydrate core"  
14  PH5  O1A   SIA  O1A   "Carbohydrate core"  
15  PH5  O1B   SIA  O1B   "Carbohydrate core"  
16  PH5  O2    SIA  O2    "Carbohydrate core"  
17  PH5  O4    SIA  O4    "Carbohydrate core"  
18  PH5  O6    SIA  O6    "Carbohydrate core"  
19  PH5  O7    SIA  O7    "Carbohydrate core"  
20  PH5  O8    SIA  O8    "Carbohydrate core"  
21  PH5  O9    SIA  O9    "Carbohydrate core"  
22  PH5  H111  SIA  H111  "Carbohydrate core"  
23  PH5  H113  SIA  H113  "Carbohydrate core"  
24  PH5  HO1B  SIA  HO1B  "Carbohydrate core"  
25  PH5  H32   SIA  H32   "Carbohydrate core"  
26  PH5  H31   SIA  H31   "Carbohydrate core"  
27  PH5  H4    SIA  H4    "Carbohydrate core"  
28  PH5  H5    SIA  H5    "Carbohydrate core"  
29  PH5  H6    SIA  H6    "Carbohydrate core"  
30  PH5  H7    SIA  H7    "Carbohydrate core"  
31  PH5  H8    SIA  H8    "Carbohydrate core"  
32  PH5  HO9   SIA  HO9   "Carbohydrate core"  
33  PH5  H92   SIA  H92   "Carbohydrate core"  
34  PH5  H91   SIA  H91   "Carbohydrate core"  
35  PH5  HO4   SIA  HO4   "Carbohydrate core"  
36  PH5  HN5   SIA  HN5   "Carbohydrate core"  
37  PH5  HO7   SIA  HO7   "Carbohydrate core"  
38  PH5  HO8   SIA  HO8   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
PH5  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
PH5  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
PH5  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
PH5  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PH5  "Create component"          2005-06-27  EBI   
PH5  "Modify descriptor"         2011-06-04  RCSB  
PH5  "Other modification"        2020-07-03  RCSB  
PH5  "Modify parent residue"     2020-07-17  RCSB  
PH5  "Modify name"               2020-07-17  RCSB  
PH5  "Modify synonyms"           2020-07-17  RCSB  
PH5  "Modify internal type"      2020-07-17  RCSB  
PH5  "Modify linking type"       2020-07-17  RCSB  
PH5  "Modify atom id"            2020-07-17  RCSB  
PH5  "Modify component atom id"  2020-07-17  RCSB  
PH5  "Modify leaving atom flag"  2020-07-17  RCSB  
##
