data_PV5
#

_chem_comp.id                                   PV5
_chem_comp.name                                 "5-fluoranyl-4-[[[8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-yl]amino]methyl]-2,3-dihydro-1-benzofuran-7-carbonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H16 F N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-28
_chem_comp.pdbx_modified_date                   2021-07-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       401.396
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PV5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YVI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PV5  C1   C1   C  0  1  Y  N  N  -20.323  27.685  11.907  -5.615  -0.938   0.611  C1   PV5   1  
PV5  C2   C2   C  0  1  Y  N  N  -20.199  29.045  11.507  -4.859   0.214   0.399  C2   PV5   2  
PV5  C3   C3   C  0  1  Y  N  N  -19.085  29.395  10.732  -5.508   1.452   0.364  C3   PV5   3  
PV5  N6   N1   N  0  1  N  N  N  -19.765  38.958   9.523   8.111  -0.626  -0.803  N6   PV5   4  
PV5  C7   C4   C  0  1  Y  N  N  -20.775  31.233  12.530  -2.547  -0.109   1.283  C7   PV5   5  
PV5  C8   C5   C  0  1  Y  N  N  -22.842  32.242  12.580  -0.673  -0.036  -0.086  C8   PV5   6  
PV5  C9   C6   C  0  1  Y  N  N  -22.563  30.075  11.441  -2.785   0.288  -1.109  C9   PV5   7  
PV5  C10  C7   C  0  1  Y  N  N  -24.627  30.806  11.397  -1.127   0.390  -2.524  C10  PV5   8  
PV5  C11  C8   C  0  1  N  N  N  -23.124  34.472  13.572   1.508  -0.385   0.994  C11  PV5   9  
PV5  C12  C9   C  0  1  Y  N  N  -22.375  35.380  12.618   2.962  -0.438   0.605  C12  PV5  10  
PV5  C13  C10  C  0  1  Y  N  N  -22.949  36.057  11.552   3.533  -1.645   0.228  C13  PV5  11  
PV5  C14  C11  C  0  1  Y  N  N  -22.294  36.960  10.764   4.865  -1.693  -0.134  C14  PV5  12  
PV5  C15  C12  C  0  1  Y  N  N  -20.962  37.248  11.028   5.636  -0.531  -0.126  C15  PV5  13  
PV5  C16  C13  C  0  1  Y  N  N  -20.341  36.622  12.099   5.056   0.693   0.253  C16  PV5  14  
PV5  C19  C14  C  0  1  N  N  N  -18.783  35.951  13.617   4.789   2.769   1.160  C19  PV5  15  
PV5  C20  C15  C  0  1  N  N  N  -20.272  38.189  10.188   7.016  -0.584  -0.504  C20  PV5  16  
PV5  F    F1   F  0  1  N  N  N  -24.226  35.764  11.231   2.788  -2.771   0.217  F    PV5  17  
PV5  O    O1   O  0  1  N  N  N  -19.029  36.805  12.479   5.607   1.935   0.322  O    PV5  18  
PV5  C18  C16  C  0  1  N  N  N  -20.081  35.228  13.950   3.382   2.146   0.992  C18  PV5  19  
PV5  C17  C17  C  0  1  Y  N  N  -21.028  35.713  12.883   3.718   0.714   0.620  C17  PV5  20  
PV5  N5   N2   N  0  1  N  N  N  -23.633  33.279  12.911   0.693  -0.126  -0.196  N5   PV5  21  
PV5  N1   N3   N  0  1  Y  N  N  -21.581  32.266  12.941  -1.230  -0.184   1.094  N1   PV5  22  
PV5  N2   N4   N  0  1  Y  N  N  -23.377  31.128  11.829  -1.413   0.206  -1.205  N2   PV5  23  
PV5  N4   N5   N  0  1  Y  N  N  -24.620  29.645  10.798  -2.258   0.594  -3.146  N4   PV5  24  
PV5  N3   N6   N  0  1  Y  N  N  -23.303  29.159  10.832  -3.243   0.525  -2.318  N3   PV5  25  
PV5  C6   C18  C  0  1  Y  N  N  -21.183  30.106  11.859  -3.392   0.127   0.213  C6   PV5  26  
PV5  C4   C19  C  0  1  Y  N  N  -18.157  28.427  10.380  -6.880   1.479   0.543  C4   PV5  27  
PV5  C5   C20  C  0  1  Y  N  N  -18.352  27.136  10.821  -7.559   0.292   0.749  C5   PV5  28  
PV5  N    N7   N  0  1  Y  N  N  -19.407  26.764  11.562  -6.921  -0.862   0.772  N    PV5  29  
PV5  C    C21  C  0  1  N  N  N  -21.450  27.167  12.750  -4.935  -2.282   0.652  C    PV5  30  
PV5  H1   H1   H  0  1  N  N  N  -18.950  30.417  10.410  -4.953   2.365   0.202  H1   PV5  31  
PV5  H2   H2   H  0  1  N  N  N  -19.722  31.314  12.755  -2.956  -0.238   2.274  H2   PV5  32  
PV5  H3   H3   H  0  1  N  N  N  -25.502  31.424  11.531  -0.143   0.389  -2.971  H3   PV5  33  
PV5  H4   H4   H  0  1  N  N  N  -22.442  34.166  14.379   1.215  -1.338   1.435  H4   PV5  34  
PV5  H5   H5   H  0  1  N  N  N  -23.971  35.029  13.999   1.354   0.413   1.720  H5   PV5  35  
PV5  H6   H6   H  0  1  N  N  N  -22.806  37.444   9.946   5.310  -2.634  -0.425  H6   PV5  36  
PV5  H7   H7   H  0  1  N  N  N  -18.000  35.219  13.372   5.113   2.717   2.200  H7   PV5  37  
PV5  H8   H8   H  0  1  N  N  N  -20.441  35.504  14.952   2.824   2.185   1.927  H8   PV5  38  
PV5  H9   H9   H  0  1  N  N  N  -24.052  33.591  12.059   1.118  -0.019  -1.061  H9   PV5  39  
PV5  H10  H10  H  0  1  N  N  N  -17.300  28.679   9.773  -7.415   2.417   0.523  H10  PV5  40  
PV5  H11  H11  H  0  1  N  N  N  -17.620  26.387  10.557  -8.630   0.309   0.890  H11  PV5  41  
PV5  H12  H12  H  0  1  N  N  N  -21.308  26.092  12.933  -4.636  -2.507   1.675  H12  PV5  42  
PV5  H13  H13  H  0  1  N  N  N  -21.466  27.703  13.710  -5.624  -3.049   0.297  H13  PV5  43  
PV5  H14  H14  H  0  1  N  N  N  -22.404  27.327  12.225  -4.053  -2.262   0.012  H14  PV5  44  
PV5  H15  H15  H  0  1  N  N  N  -18.462  36.557  14.477   4.800   3.800   0.806  H15  PV5  45  
PV5  H16  H16  H  0  1  N  N  N  -19.950  34.137  13.895   2.831   2.638   0.190  H16  PV5  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PV5  N6   C20  TRIP  N  N   1  
PV5  C20  C15  SING  N  N   2  
PV5  C4   C3   DOUB  Y  N   3  
PV5  C4   C5   SING  Y  N   4  
PV5  C3   C2   SING  Y  N   5  
PV5  C14  C15  DOUB  Y  N   6  
PV5  C14  C13  SING  Y  N   7  
PV5  N4   N3   SING  Y  N   8  
PV5  N4   C10  DOUB  Y  N   9  
PV5  C5   N    DOUB  Y  N  10  
PV5  N3   C9   DOUB  Y  N  11  
PV5  C15  C16  SING  Y  N  12  
PV5  F    C13  SING  N  N  13  
PV5  C10  N2   SING  Y  N  14  
PV5  C9   N2   SING  Y  N  15  
PV5  C9   C6   SING  Y  N  16  
PV5  C2   C6   SING  N  N  17  
PV5  C2   C1   DOUB  Y  N  18  
PV5  C13  C12  DOUB  Y  N  19  
PV5  N    C1   SING  Y  N  20  
PV5  N2   C8   SING  Y  N  21  
PV5  C6   C7   DOUB  Y  N  22  
PV5  C1   C    SING  N  N  23  
PV5  C16  O    SING  N  N  24  
PV5  C16  C17  DOUB  Y  N  25  
PV5  O    C19  SING  N  N  26  
PV5  C7   N1   SING  Y  N  27  
PV5  C8   N5   SING  N  N  28  
PV5  C8   N1   DOUB  Y  N  29  
PV5  C12  C17  SING  Y  N  30  
PV5  C12  C11  SING  N  N  31  
PV5  C17  C18  SING  N  N  32  
PV5  N5   C11  SING  N  N  33  
PV5  C19  C18  SING  N  N  34  
PV5  C3   H1   SING  N  N  35  
PV5  C7   H2   SING  N  N  36  
PV5  C10  H3   SING  N  N  37  
PV5  C11  H4   SING  N  N  38  
PV5  C11  H5   SING  N  N  39  
PV5  C14  H6   SING  N  N  40  
PV5  C19  H7   SING  N  N  41  
PV5  C18  H8   SING  N  N  42  
PV5  N5   H9   SING  N  N  43  
PV5  C4   H10  SING  N  N  44  
PV5  C5   H11  SING  N  N  45  
PV5  C    H12  SING  N  N  46  
PV5  C    H13  SING  N  N  47  
PV5  C    H14  SING  N  N  48  
PV5  C19  H15  SING  N  N  49  
PV5  C18  H16  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PV5  InChI             InChI                 1.03   "InChI=1S/C21H16FN7O/c1-12-14(3-2-5-24-12)17-10-26-21(29-11-27-28-20(17)29)25-9-16-15-4-6-30-19(15)13(8-23)7-18(16)22/h2-3,5,7,10-11H,4,6,9H2,1H3,(H,25,26)"  
PV5  InChIKey          InChI                 1.03   HTLKMVIYVDETDN-UHFFFAOYSA-N  
PV5  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncccc1c2cnc(NCc3c(F)cc(C#N)c4OCCc34)n5cnnc25"  
PV5  SMILES            CACTVS                3.385  "Cc1ncccc1c2cnc(NCc3c(F)cc(C#N)c4OCCc34)n5cnnc25"  
PV5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(cccn1)c2cnc(n3c2nnc3)NCc4c(cc(c5c4CCO5)C#N)F"  
PV5  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(cccn1)c2cnc(n3c2nnc3)NCc4c(cc(c5c4CCO5)C#N)F"  
#
_pdbx_chem_comp_identifier.comp_id          PV5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-fluoranyl-4-[[[8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-yl]amino]methyl]-2,3-dihydro-1-benzofuran-7-carbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PV5  "Create component"      2020-04-28  PDBE  
PV5  "Initial release"       2021-05-12  RCSB  
PV5  "Modify aromatic_flag"  2021-07-07  PDBE  
PV5  "Modify name"           2021-07-07  PDBE  
##
