data_WB5
# 
_chem_comp.id                                    WB5 
_chem_comp.name                                  "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-(methylamino)-4-oxo-1-phenylbutan-2-yl]-D-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H31 Cl2 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-29 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        580.505 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WB5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UDJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WB5 C10 C1  C  0 1 Y N N N N N 10.101 -7.419 26.102 2.803  -0.893 -3.880 C10 WB5 1  
WB5 C11 C2  C  0 1 Y N N N N N 10.051 -7.321 24.714 3.551  -0.428 -2.814 C11 WB5 2  
WB5 C13 C3  C  0 1 N N R N N N 8.807  -1.568 22.865 0.747  0.469  0.117  C13 WB5 3  
WB5 C15 C4  C  0 1 Y N N N N N 7.838  -0.452 24.812 -0.238 2.490  -0.929 C15 WB5 4  
WB5 C17 C5  C  0 1 Y N N N N N 5.617  -0.289 25.772 -1.144 4.514  -0.023 C17 WB5 5  
WB5 C19 C6  C  0 1 Y N N N N N 6.902  1.744  25.138 -2.412 3.234  -1.602 C19 WB5 6  
WB5 C21 C7  C  0 1 N N N N N N 8.363  0.053  21.098 -1.656 0.171  0.393  C21 WB5 7  
WB5 C22 C8  C  0 1 N N R N N N 8.694  1.293  20.308 -2.920 -0.626 0.203  C22 WB5 8  
WB5 C23 C9  C  0 1 N N N N N N 8.896  0.924  18.859 -2.994 -1.726 1.265  C23 WB5 9  
WB5 C25 C10 C  0 1 Y N N N N N 9.250  -1.357 17.892 -4.102 -3.661 0.100  C25 WB5 10 
WB5 C1  C11 C  0 1 N N N N N N 11.620 -8.396 19.241 4.186  -0.522 5.247  C1  WB5 11 
WB5 C2  C12 C  0 1 N N N N N N 11.031 -6.221 20.167 4.412  -0.693 2.827  C2  WB5 12 
WB5 C3  C13 C  0 1 N N N N N N 9.996  -5.213 20.562 5.188  -0.480 1.553  C3  WB5 13 
WB5 C4  C14 C  0 1 N N S N N N 9.861  -5.144 22.054 4.321  -0.877 0.356  C4  WB5 14 
WB5 C5  C15 C  0 1 N N N N N N 9.148  -6.370 22.568 5.152  -0.794 -0.926 C5  WB5 15 
WB5 C6  C16 C  0 1 Y N N N N N 9.175  -6.444 24.073 4.336  -1.302 -2.087 C6  WB5 16 
WB5 C8  C17 C  0 1 Y N N N N N 8.326  -5.692 26.215 3.626  -3.108 -3.489 C8  WB5 17 
WB5 C14 C18 C  0 1 N N N N N N 8.976  -1.304 24.337 0.883  1.487  -1.017 C14 WB5 18 
WB5 C12 C19 C  0 1 N N N N N N 9.669  -2.748 22.516 1.933  -0.460 0.104  C12 WB5 19 
WB5 C16 C20 C  0 1 Y N N N N N 6.691  -1.055 25.331 -0.115 3.593  -0.103 C16 WB5 20 
WB5 C18 C21 C  0 1 Y N N N N N 5.674  1.095  25.695 -2.295 4.332  -0.769 C18 WB5 21 
WB5 C20 C22 C  0 1 Y N N N N N 7.945  0.933  24.715 -1.385 2.312  -1.678 C20 WB5 22 
WB5 C24 C23 C  0 1 Y N N N N N 9.762  -0.293 18.626 -4.194 -2.599 1.001  C24 WB5 23 
WB5 C26 C24 C  0 1 Y N N N N N 10.022 -2.491 17.645 -5.218 -4.465 -0.139 C26 WB5 24 
WB5 C27 C25 C  0 1 Y N N N N N 11.325 -2.565 18.132 -6.404 -4.205 0.517  C27 WB5 25 
WB5 C28 C26 C  0 1 Y N N N N N 11.844 -1.498 18.859 -6.488 -3.151 1.408  C28 WB5 26 
WB5 C29 C27 C  0 1 Y N N N N N 11.068 -0.367 19.107 -5.386 -2.350 1.649  C29 WB5 27 
WB5 C30 C28 C  0 1 N N N N N N 7.847  -1.261 17.378 -2.869 -3.922 -0.582 C30 WB5 28 
WB5 C7  C29 C  0 1 Y N N N N N 8.316  -5.642 24.825 4.374  -2.642 -2.424 C7  WB5 29 
WB5 C9  C30 C  0 1 Y N N N N N 9.269  -6.634 26.893 2.841  -2.233 -4.218 C9  WB5 30 
WB5 CL1 CL1 CL 0 0 N N N N N N 4.342  2.055  26.243 -3.592 5.480  -0.658 CL1 WB5 31 
WB5 CL2 CL2 CL 0 0 N N N N N N 6.588  -2.779 25.434 1.329  3.821  0.834  CL2 WB5 32 
WB5 N1  N1  N  0 1 N N N N N N 10.644 -7.386 19.642 4.940  -0.315 4.008  N1  WB5 33 
WB5 N2  N2  N  0 1 N N N N N N 9.091  -3.943 22.375 3.178  0.034  0.257  N2  WB5 34 
WB5 N3  N3  N  0 1 N N N N N N 9.143  -0.360 22.099 -0.482 -0.306 -0.068 N3  WB5 35 
WB5 N4  N4  N  0 1 N N N N N N 7.611  2.294  20.397 -4.083 0.261  0.336  N4  WB5 36 
WB5 N5  N5  N  0 1 N N N N N N 6.762  -1.177 16.990 -1.892 -4.128 -1.122 N5  WB5 37 
WB5 O1  O1  O  0 1 N N N N N N 7.370  -0.607 20.804 -1.694 1.242  0.961  O1  WB5 38 
WB5 O2  O2  O  0 1 N N N N N N 10.887 -2.617 22.391 1.768  -1.652 -0.046 O2  WB5 39 
WB5 O3  O3  O  0 1 N N N N N N 12.225 -5.955 20.327 3.313  -1.205 2.790  O3  WB5 40 
WB5 H1  H1  H  0 1 N N N N N N 10.790 -8.109 26.567 2.186  -0.211 -4.446 H1  WB5 41 
WB5 H2  H2  H  0 1 N N N N N N 10.707 -7.939 24.119 3.522  0.619  -2.551 H2  WB5 42 
WB5 H3  H3  H  0 1 N N N N N N 7.756  -1.833 22.675 0.706  0.993  1.072  H3  WB5 43 
WB5 H4  H4  H  0 1 N N N N N N 4.739  -0.772 26.174 -1.049 5.375  0.623  H4  WB5 44 
WB5 H5  H5  H  0 1 N N N N N N 6.975  2.819  25.067 -3.310 3.092  -2.185 H5  WB5 45 
WB5 H6  H6  H  0 1 N N N N N N 9.626  1.728  20.699 -2.919 -1.078 -0.789 H6  WB5 46 
WB5 H7  H7  H  0 1 N N N N N N 9.365  1.779  18.351 -2.089 -2.331 1.224  H7  WB5 47 
WB5 H8  H8  H  0 1 N N N N N N 7.908  0.730  18.415 -3.085 -1.272 2.252  H8  WB5 48 
WB5 H9  H9  H  0 1 N N N N N N 11.095 -9.274 18.836 4.769  -0.156 6.093  H9  WB5 49 
WB5 H10 H10 H  0 1 N N N N N N 12.284 -7.978 18.470 3.243  0.023  5.194  H10 WB5 50 
WB5 H11 H11 H  0 1 N N N N N N 12.216 -8.697 20.115 3.985  -1.585 5.377  H11 WB5 51 
WB5 H12 H12 H  0 1 N N N N N N 10.292 -4.224 20.181 5.465  0.570  1.468  H12 WB5 52 
WB5 H13 H13 H  0 1 N N N N N N 9.028  -5.500 20.125 6.088  -1.094 1.569  H13 WB5 53 
WB5 H14 H14 H  0 1 N N N N N N 10.860 -5.084 22.511 3.961  -1.898 0.491  H14 WB5 54 
WB5 H15 H15 H  0 1 N N N N N N 8.101  -6.340 22.232 5.437  0.242  -1.107 H15 WB5 55 
WB5 H16 H16 H  0 1 N N N N N N 9.639  -7.265 22.159 6.049  -1.404 -0.817 H16 WB5 56 
WB5 H17 H17 H  0 1 N N N N N N 7.666  -5.063 26.793 3.655  -4.154 -3.753 H17 WB5 57 
WB5 H18 H18 H  0 1 N N N N N N 8.977  -2.258 24.885 1.840  2.002  -0.930 H18 WB5 58 
WB5 H19 H19 H  0 1 N N N N N N 9.927  -0.780 24.511 0.835  0.971  -1.976 H19 WB5 59 
WB5 H20 H20 H  0 1 N N N N N N 8.842  1.377  24.309 -1.480 1.451  -2.323 H20 WB5 60 
WB5 H21 H21 H  0 1 N N N N N N 9.610  -3.312 17.076 -5.154 -5.289 -0.835 H21 WB5 61 
WB5 H22 H22 H  0 1 N N N N N N 11.927 -3.442 17.947 -7.268 -4.826 0.334  H22 WB5 62 
WB5 H23 H23 H  0 1 N N N N N N 12.856 -1.547 19.234 -7.419 -2.951 1.918  H23 WB5 63 
WB5 H24 H24 H  0 1 N N N N N N 11.480 0.455  19.674 -5.458 -1.528 2.346  H24 WB5 64 
WB5 H25 H25 H  0 1 N N N N N N 7.634  -4.973 24.321 4.987  -3.325 -1.856 H25 WB5 65 
WB5 H26 H26 H  0 1 N N N N N N 9.303  -6.703 27.970 2.253  -2.598 -5.047 H26 WB5 66 
WB5 H27 H27 H  0 1 N N N N N N 9.669  -7.570 19.521 5.819  0.094  4.038  H27 WB5 67 
WB5 H28 H28 H  0 1 N N N N N N 8.101  -4.019 22.493 3.317  0.993  0.303  H28 WB5 68 
WB5 H29 H29 H  0 1 N N N N N N 9.966  0.159  22.331 -0.452 -1.163 -0.522 H29 WB5 69 
WB5 H30 H30 H  0 1 N N N N N N 7.468  2.547  21.354 -4.107 0.693  1.247  H30 WB5 70 
WB5 H31 H31 H  0 1 N N N N N N 7.864  3.107  19.872 -4.092 0.958  -0.395 H31 WB5 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WB5 N5  C30 TRIP N N 1  
WB5 C30 C25 SING N N 2  
WB5 C26 C25 DOUB Y N 3  
WB5 C26 C27 SING Y N 4  
WB5 C25 C24 SING Y N 5  
WB5 C27 C28 DOUB Y N 6  
WB5 C24 C23 SING N N 7  
WB5 C24 C29 DOUB Y N 8  
WB5 C28 C29 SING Y N 9  
WB5 C23 C22 SING N N 10 
WB5 C1  N1  SING N N 11 
WB5 N1  C2  SING N N 12 
WB5 C2  O3  DOUB N N 13 
WB5 C2  C3  SING N N 14 
WB5 C22 N4  SING N N 15 
WB5 C22 C21 SING N N 16 
WB5 C3  C4  SING N N 17 
WB5 O1  C21 DOUB N N 18 
WB5 C21 N3  SING N N 19 
WB5 C4  N2  SING N N 20 
WB5 C4  C5  SING N N 21 
WB5 N3  C13 SING N N 22 
WB5 N2  C12 SING N N 23 
WB5 O2  C12 DOUB N N 24 
WB5 C12 C13 SING N N 25 
WB5 C5  C6  SING N N 26 
WB5 C13 C14 SING N N 27 
WB5 C6  C11 DOUB Y N 28 
WB5 C6  C7  SING Y N 29 
WB5 C14 C15 SING N N 30 
WB5 C11 C10 SING Y N 31 
WB5 C20 C15 DOUB Y N 32 
WB5 C20 C19 SING Y N 33 
WB5 C15 C16 SING Y N 34 
WB5 C7  C8  DOUB Y N 35 
WB5 C19 C18 DOUB Y N 36 
WB5 C16 CL2 SING N N 37 
WB5 C16 C17 DOUB Y N 38 
WB5 C18 C17 SING Y N 39 
WB5 C18 CL1 SING N N 40 
WB5 C10 C9  DOUB Y N 41 
WB5 C8  C9  SING Y N 42 
WB5 C10 H1  SING N N 43 
WB5 C11 H2  SING N N 44 
WB5 C13 H3  SING N N 45 
WB5 C17 H4  SING N N 46 
WB5 C19 H5  SING N N 47 
WB5 C22 H6  SING N N 48 
WB5 C23 H7  SING N N 49 
WB5 C23 H8  SING N N 50 
WB5 C1  H9  SING N N 51 
WB5 C1  H10 SING N N 52 
WB5 C1  H11 SING N N 53 
WB5 C3  H12 SING N N 54 
WB5 C3  H13 SING N N 55 
WB5 C4  H14 SING N N 56 
WB5 C5  H15 SING N N 57 
WB5 C5  H16 SING N N 58 
WB5 C8  H17 SING N N 59 
WB5 C14 H18 SING N N 60 
WB5 C14 H19 SING N N 61 
WB5 C20 H20 SING N N 62 
WB5 C26 H21 SING N N 63 
WB5 C27 H22 SING N N 64 
WB5 C28 H23 SING N N 65 
WB5 C29 H24 SING N N 66 
WB5 C7  H25 SING N N 67 
WB5 C9  H26 SING N N 68 
WB5 N1  H27 SING N N 69 
WB5 N2  H28 SING N N 70 
WB5 N3  H29 SING N N 71 
WB5 N4  H30 SING N N 72 
WB5 N4  H31 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WB5 SMILES           ACDLabs              12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(N)Cc1ccccc1C#N)C(=O)NC(Cc1ccccc1)CC(=O)NC"                                                                                                                                                                  
WB5 InChI            InChI                1.06  "InChI=1S/C30H31Cl2N5O3/c1-35-28(38)17-24(13-19-7-3-2-4-8-19)36-30(40)27(15-21-11-12-23(31)16-25(21)32)37-29(39)26(34)14-20-9-5-6-10-22(20)18-33/h2-12,16,24,26-27H,13-15,17,34H2,1H3,(H,35,38)(H,36,40)(H,37,39)/t24-,26+,27+/m0/s1" 
WB5 InChIKey         InChI                1.06  PQNNKOZAACJZJY-WYMJOSIYSA-N                                                                                                                                                                                                           
WB5 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)C[C@H](Cc1ccccc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](N)Cc3ccccc3C#N"                                                                                                                                                     
WB5 SMILES           CACTVS               3.385 "CNC(=O)C[CH](Cc1ccccc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](N)Cc3ccccc3C#N"                                                                                                                                                         
WB5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)C[C@H](Cc1ccccc1)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)N"                                                                                                                                                    
WB5 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)CC(Cc1ccccc1)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)N"                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WB5 "SYSTEMATIC NAME" ACDLabs              12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-(methylamino)-4-oxo-1-phenylbutan-2-yl]-D-phenylalaninamide"                                         
WB5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-methyl-4-phenyl-butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WB5 "Create component" 2023-09-29 RCSB 
WB5 "Initial release"  2024-12-25 RCSB 
# 
