data_WT5
# 
_chem_comp.id                                    WT5 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[6-({[(5M)-3-methyl-5-(1H-pyrrol-2-yl)phenyl]amino}methyl)pyridin-2-yl]methyl}piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-18 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.519 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WT5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EQX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WT5 N1  N1  N 0 1 N N N -38.334 -30.887 -67.673 -3.845 -0.362 0.555  N1  WT5 1  
WT5 N3  N2  N 0 1 N N N -44.309 -33.482 -65.213 2.248  0.918  0.251  N3  WT5 2  
WT5 C4  C1  C 0 1 N N N -38.685 -32.304 -67.876 -4.663 0.858  0.580  C4  WT5 3  
WT5 C5  C2  C 0 1 N N R -36.911 -30.785 -67.365 -4.684 -1.565 0.634  C5  WT5 4  
WT5 C6  C3  C 0 1 N N N -36.558 -29.309 -67.260 -3.792 -2.808 0.650  C6  WT5 5  
WT5 C7  C4  C 0 1 N N N -38.964 -30.454 -66.698 -2.844 -0.346 1.630  C7  WT5 6  
WT5 C8  C5  C 0 1 Y N N -40.477 -30.818 -66.714 -1.918 0.826  1.437  C8  WT5 7  
WT5 C10 C6  C 0 1 N N N -42.830 -33.403 -65.298 1.136  1.523  -0.487 C10 WT5 8  
WT5 C13 C7  C 0 1 Y N N -44.916 -30.946 -62.507 4.786  0.676  -2.401 C13 WT5 9  
WT5 C15 C8  C 0 1 Y N N -46.293 -30.917 -62.524 5.841  0.112  -1.713 C15 WT5 10 
WT5 C17 C9  C 0 1 Y N N -48.571 -31.545 -63.292 6.835  -0.801 0.381  C17 WT5 11 
WT5 C20 C10 C 0 1 Y N N -50.687 -31.739 -63.678 8.054  -1.681 2.015  C20 WT5 12 
WT5 C21 C11 C 0 1 Y N N -46.418 -32.526 -64.288 4.506  0.077  0.298  C21 WT5 13 
WT5 C22 C12 C 0 1 Y N N -43.132 -31.414 -66.887 -0.226 2.924  1.068  C22 WT5 14 
WT5 C24 C13 C 0 1 Y N N -41.307 -30.045 -67.533 -2.166 2.011  2.105  C24 WT5 15 
WT5 C1  C14 C 0 1 N N R -35.980 -31.496 -68.385 -5.615 -1.620 -0.579 C1  WT5 16 
WT5 C11 C15 C 0 1 Y N N -45.024 -32.592 -64.279 3.454  0.648  -0.400 C11 WT5 17 
WT5 C12 C16 C 0 1 Y N N -44.276 -31.793 -63.387 3.597  0.947  -1.751 C12 WT5 18 
WT5 C14 C17 C 0 1 N N N -44.158 -30.053 -61.513 4.933  1.003  -3.865 C14 WT5 19 
WT5 C16 C18 C 0 1 Y N N -47.044 -31.672 -63.400 5.708  -0.191 -0.357 C16 WT5 20 
WT5 C18 C19 C 0 1 Y N N -49.233 -30.882 -62.240 8.057  -1.113 -0.136 C18 WT5 21 
WT5 C19 C20 C 0 1 Y N N -50.577 -31.002 -62.496 8.821  -1.668 0.904  C19 WT5 22 
WT5 C2  C21 C 0 1 N N R -36.346 -32.908 -68.507 -6.491 -0.364 -0.602 C2  WT5 23 
WT5 C23 C22 C 0 1 Y N N -42.665 -30.329 -67.636 -1.308 3.083  1.921  C23 WT5 24 
WT5 C3  C23 C 0 1 N N S -37.751 -33.000 -68.882 -5.593 0.875  -0.635 C3  WT5 25 
WT5 C9  C24 C 0 1 Y N N -42.260 -32.184 -66.090 -0.039 1.709  0.438  C9  WT5 26 
WT5 N2  N3  N 0 1 Y N N -40.964 -31.849 -66.009 -0.876 0.709  0.637  N2  WT5 27 
WT5 N4  N4  N 0 1 Y N N -49.470 -32.062 -64.112 6.839  -1.146 1.708  N4  WT5 28 
WT5 O1  O1  O 0 1 N N N -34.701 -31.501 -67.772 -6.445 -2.780 -0.491 O1  WT5 29 
WT5 O2  O2  O 0 1 N N N -35.492 -33.491 -69.575 -7.323 -0.384 -1.763 O2  WT5 30 
WT5 O3  O3  O 0 1 N N N -38.241 -34.272 -69.297 -6.402 2.052  -0.600 O3  WT5 31 
WT5 O4  O4  O 0 1 N N N -36.916 -28.776 -68.481 -3.072 -2.892 -0.581 O4  WT5 32 
WT5 H2  H2  H 0 1 N N N -44.665 -33.292 -66.128 2.147  0.706  1.192  H2  WT5 33 
WT5 H3  H3  H 0 1 N N N -39.717 -32.362 -68.253 -5.258 0.878  1.493  H3  WT5 34 
WT5 H4  H4  H 0 1 N N N -38.617 -32.827 -66.911 -4.012 1.732  0.551  H4  WT5 35 
WT5 H5  H5  H 0 1 N N N -36.732 -31.244 -66.381 -5.279 -1.533 1.547  H5  WT5 36 
WT5 H6  H6  H 0 1 N N N -35.480 -29.180 -67.081 -3.088 -2.739 1.479  H6  WT5 37 
WT5 H7  H7  H 0 1 N N N -37.125 -28.831 -66.447 -4.410 -3.697 0.771  H7  WT5 38 
WT5 H8  H8  H 0 1 N N N -38.517 -30.871 -65.784 -3.346 -0.258 2.593  H8  WT5 39 
WT5 H9  H9  H 0 1 N N N -38.871 -29.358 -66.685 -2.269 -1.272 1.604  H9  WT5 40 
WT5 H10 H10 H 0 1 N N N -42.470 -34.321 -65.786 1.445  2.491  -0.881 H10 WT5 41 
WT5 H11 H11 H 0 1 N N N -42.435 -33.354 -64.273 0.850  0.869  -1.311 H11 WT5 42 
WT5 H12 H12 H 0 1 N N N -46.806 -30.276 -61.822 6.770  -0.094 -2.224 H12 WT5 43 
WT5 H13 H13 H 0 1 N N N -51.614 -32.005 -64.164 8.355  -2.048 2.985  H13 WT5 44 
WT5 H14 H14 H 0 1 N N N -46.995 -33.129 -64.974 4.398  -0.156 1.347  H14 WT5 45 
WT5 H15 H15 H 0 1 N N N -44.181 -31.667 -66.920 0.463  3.739  0.901  H15 WT5 46 
WT5 H16 H16 H 0 1 N N N -40.889 -29.220 -68.091 -3.019 2.099  2.762  H16 WT5 47 
WT5 H17 H17 H 0 1 N N N -35.990 -30.977 -69.355 -5.020 -1.666 -1.492 H17 WT5 48 
WT5 H18 H18 H 0 1 N N N -43.197 -31.845 -63.394 2.776  1.393  -2.293 H18 WT5 49 
WT5 H19 H19 H 0 1 N N N -43.948 -29.079 -61.980 4.626  0.144  -4.462 H19 WT5 50 
WT5 H20 H20 H 0 1 N N N -44.772 -29.903 -60.613 4.305  1.859  -4.111 H20 WT5 51 
WT5 H21 H21 H 0 1 N N N -43.211 -30.537 -61.234 5.974  1.243  -4.081 H21 WT5 52 
WT5 H22 H22 H 0 1 N N N -48.775 -30.380 -61.400 8.378  -0.961 -1.156 H22 WT5 53 
WT5 H23 H23 H 0 1 N N N -51.387 -30.606 -61.902 9.837  -2.025 0.826  H23 WT5 54 
WT5 H24 H24 H 0 1 N N N -36.168 -33.432 -67.556 -7.114 -0.339 0.292  H24 WT5 55 
WT5 H25 H25 H 0 1 N N N -43.323 -29.743 -68.261 -1.477 4.021  2.430  H25 WT5 56 
WT5 H26 H26 H 0 1 N N N -37.830 -32.370 -69.780 -4.998 0.869  -1.549 H26 WT5 57 
WT5 H27 H27 H 0 1 N N N -49.269 -32.607 -64.926 6.097  -1.035 2.323  H27 WT5 58 
WT5 H28 H28 H 0 1 N N N -34.399 -30.607 -67.661 -7.061 -2.879 -1.230 H28 WT5 59 
WT5 H29 H29 H 0 1 N N N -34.579 -33.426 -69.321 -7.907 0.383  -1.842 H29 WT5 60 
WT5 H30 H30 H 0 1 N N N -39.163 -34.201 -69.513 -5.898 2.877  -0.618 H30 WT5 61 
WT5 H31 H31 H 0 1 N N N -36.723 -27.846 -68.490 -2.485 -3.659 -0.642 H31 WT5 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WT5 O2  C2  SING N N 1  
WT5 O3  C3  SING N N 2  
WT5 C3  C2  SING N N 3  
WT5 C3  C4  SING N N 4  
WT5 C2  C1  SING N N 5  
WT5 O4  C6  SING N N 6  
WT5 C1  O1  SING N N 7  
WT5 C1  C5  SING N N 8  
WT5 C4  N1  SING N N 9  
WT5 N1  C5  SING N N 10 
WT5 N1  C7  SING N N 11 
WT5 C23 C24 DOUB Y N 12 
WT5 C23 C22 SING Y N 13 
WT5 C24 C8  SING Y N 14 
WT5 C5  C6  SING N N 15 
WT5 C22 C9  DOUB Y N 16 
WT5 C8  C7  SING N N 17 
WT5 C8  N2  DOUB Y N 18 
WT5 C9  N2  SING Y N 19 
WT5 C9  C10 SING N N 20 
WT5 C10 N3  SING N N 21 
WT5 N3  C11 SING N N 22 
WT5 C21 C11 DOUB Y N 23 
WT5 C21 C16 SING Y N 24 
WT5 C11 C12 SING Y N 25 
WT5 N4  C20 SING Y N 26 
WT5 N4  C17 SING Y N 27 
WT5 C20 C19 DOUB Y N 28 
WT5 C16 C17 SING N N 29 
WT5 C16 C15 DOUB Y N 30 
WT5 C12 C13 DOUB Y N 31 
WT5 C17 C18 DOUB Y N 32 
WT5 C15 C13 SING Y N 33 
WT5 C13 C14 SING N N 34 
WT5 C19 C18 SING Y N 35 
WT5 N3  H2  SING N N 36 
WT5 C4  H3  SING N N 37 
WT5 C4  H4  SING N N 38 
WT5 C5  H5  SING N N 39 
WT5 C6  H6  SING N N 40 
WT5 C6  H7  SING N N 41 
WT5 C7  H8  SING N N 42 
WT5 C7  H9  SING N N 43 
WT5 C10 H10 SING N N 44 
WT5 C10 H11 SING N N 45 
WT5 C15 H12 SING N N 46 
WT5 C20 H13 SING N N 47 
WT5 C21 H14 SING N N 48 
WT5 C22 H15 SING N N 49 
WT5 C24 H16 SING N N 50 
WT5 C1  H17 SING N N 51 
WT5 C12 H18 SING N N 52 
WT5 C14 H19 SING N N 53 
WT5 C14 H20 SING N N 54 
WT5 C14 H21 SING N N 55 
WT5 C18 H22 SING N N 56 
WT5 C19 H23 SING N N 57 
WT5 C2  H24 SING N N 58 
WT5 C23 H25 SING N N 59 
WT5 C3  H26 SING N N 60 
WT5 N4  H27 SING N N 61 
WT5 O1  H28 SING N N 62 
WT5 O2  H29 SING N N 63 
WT5 O3  H30 SING N N 64 
WT5 O4  H31 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WT5 SMILES           ACDLabs              12.01 "Cc1cc(cc(c1)c1ccc[NH]1)NCc1nc(CN2CC(O)C(O)C(O)C2CO)ccc1"                                                                                                                       
WT5 InChI            InChI                1.06  "InChI=1S/C24H30N4O4/c1-15-8-16(20-6-3-7-25-20)10-19(9-15)26-11-17-4-2-5-18(27-17)12-28-13-22(30)24(32)23(31)21(28)14-29/h2-10,21-26,29-32H,11-14H2,1H3/t21-,22+,23-,24-/m1/s1" 
WT5 InChIKey         InChI                1.06  FVGKDBDETCVPLQ-UEQSERJNSA-N                                                                                                                                                     
WT5 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(NCc2cccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)n2)cc(c1)c4[nH]ccc4"                                                                                                      
WT5 SMILES           CACTVS               3.385 "Cc1cc(NCc2cccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)n2)cc(c1)c4[nH]ccc4"                                                                                                           
WT5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(n2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ccc[nH]4"                                                                                                     
WT5 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(n2)CN3CC(C(C(C3CO)O)O)O)c4ccc[nH]4"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WT5 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[6-({[(5M)-3-methyl-5-(1H-pyrrol-2-yl)phenyl]amino}methyl)pyridin-2-yl]methyl}piperidine-3,4,5-triol"           
WT5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[6-[[[3-methyl-5-(1~{H}-pyrrol-2-yl)phenyl]amino]methyl]pyridin-2-yl]methyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WT5 "Create component" 2022-10-18 RCSB 
WT5 "Initial release"  2023-02-22 RCSB 
# 
