data_YR5
# 
_chem_comp.id                                    YR5 
_chem_comp.name                                  "3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H16 F N2 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-11 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.269 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YR5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V9M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YR5 C13  C1  C 0 1 Y N N N N N 1.126  -20.217 -2.356 -1.235 1.769  0.359  C13  YR5 1  
YR5 C20  C2  C 0 1 Y N N N N N 1.897  -20.963 -3.130 -1.392 3.131  0.124  C20  YR5 2  
YR5 O23  O1  O 0 1 N N N N N N -2.725 -17.104 -0.562 -5.103 -3.161 -0.446 O23  YR5 3  
YR5 C01  C3  C 0 1 Y N N N N N 4.556  -20.765 1.165  2.600  0.171  1.509  C01  YR5 4  
YR5 C02  C4  C 0 1 Y N N N N N 4.927  -20.832 2.425  3.846  -0.346 1.818  C02  YR5 5  
YR5 C03  C5  C 0 1 Y N N N N N 4.135  -20.153 3.524  4.734  -0.670 0.808  C03  YR5 6  
YR5 C04  C6  C 0 1 Y N N N N N 3.038  -19.486 3.140  4.373  -0.476 -0.526 C04  YR5 7  
YR5 C05  C7  C 0 1 Y N N N N N 2.588  -19.379 1.707  3.116  0.045  -0.836 C05  YR5 8  
YR5 C06  C8  C 0 1 Y N N N N N 3.300  -20.020 0.775  2.233  0.368  0.183  C06  YR5 9  
YR5 C07  C9  C 0 1 N N N N N N 2.230  -18.830 4.247  5.320  -0.820 -1.607 C07  YR5 10 
YR5 C12  C10 C 0 1 N N N N N N 1.527  -19.800 -0.950 0.041  1.230  0.953  C12  YR5 11 
YR5 C14  C11 C 0 1 Y N N N N N -0.226 -19.888 -2.862 -2.283 0.921  0.040  C14  YR5 12 
YR5 C15  C12 C 0 1 N N N N N N -1.191 -19.082 -1.978 -2.163 -0.562 0.277  C15  YR5 13 
YR5 C16  C13 C 0 1 Y N N N N N -0.637 -20.219 -4.057 -3.441 1.452  -0.497 C16  YR5 14 
YR5 C18  C14 C 0 1 Y N N N N N 1.418  -21.351 -4.502 -2.584 3.589  -0.419 C18  YR5 15 
YR5 C19  C15 C 0 1 N N N N N N 2.349  -22.215 -5.364 -2.768 5.061  -0.680 C19  YR5 16 
YR5 F11  F1  F 0 1 N N N N N N 6.043  -21.533 2.794  4.196  -0.534 3.109  F11  YR5 17 
YR5 N10  N1  N 0 1 N N N N N N 2.946  -19.983 -0.621 0.974  0.890  -0.124 N10  YR5 18 
YR5 N17  N2  N 0 1 Y N N N N N 0.236  -21.024 -4.932 -3.558 2.748  -0.708 N17  YR5 19 
YR5 O08  O2  O 0 1 N N N N N N 2.802  -18.462 5.311  5.004  -0.651 -2.768 O08  YR5 20 
YR5 O09  O3  O 0 1 N N N N N N 0.990  -18.725 4.082  6.533  -1.323 -1.306 O09  YR5 21 
YR5 O21  O4  O 0 1 N N N N N N 3.162  -21.427 -2.716 -0.391 4.002  0.421  O21  YR5 22 
YR5 O24  O5  O 0 1 N N N N N N -0.701 -17.763 -2.030 -3.370 -1.209 -0.132 O24  YR5 23 
YR5 O25  O6  O 0 1 N N N N N N -0.539 -17.069 0.403  -3.355 -3.236 1.373  O25  YR5 24 
YR5 O26  O7  O 0 1 N N N N N N -1.087 -15.418 -1.226 -2.564 -3.556 -1.002 O26  YR5 25 
YR5 P22  P1  P 0 1 N N N N N N -1.267 -16.802 -0.796 -3.592 -2.800 -0.021 P22  YR5 26 
YR5 H011 H1  H 0 0 N N N N N N 5.153  -21.246 0.404  1.909  0.419  2.301  H011 YR5 27 
YR5 H031 H2  H 0 0 N N N N N N 4.438  -20.204 4.559  5.706  -1.072 1.052  H031 YR5 28 
YR5 H051 H3  H 0 0 N N N N N N 1.715  -18.801 1.440  2.833  0.198  -1.867 H051 YR5 29 
YR5 H122 H4  H 0 0 N N N N N N 1.285  -18.734 -0.830 0.489  1.986  1.597  H122 YR5 30 
YR5 H121 H5  H 0 0 N N N N N N 0.934  -20.393 -0.238 -0.180 0.337  1.538  H121 YR5 31 
YR5 H152 H6  H 0 0 N N N N N N -2.215 -19.132 -2.375 -1.326 -0.956 -0.300 H152 YR5 32 
YR5 H151 H7  H 0 0 N N N N N N -1.180 -19.460 -0.945 -1.992 -0.748 1.337  H151 YR5 33 
YR5 H161 H8  H 0 0 N N N N N N -1.611 -19.905 -4.402 -4.262 0.795  -0.748 H161 YR5 34 
YR5 H192 H9  H 0 0 N N N N N N 1.848  -22.463 -6.311 -2.428 5.297  -1.688 H192 YR5 35 
YR5 H191 H10 H 0 0 N N N N N N 3.275  -21.659 -5.574 -3.823 5.319  -0.582 H191 YR5 36 
YR5 H193 H11 H 0 0 N N N N N N 2.592  -23.142 -4.825 -2.186 5.634  0.043  H193 YR5 37 
YR5 H101 H12 H 0 0 N N N N N N 3.451  -19.228 -1.039 0.718  1.027  -1.049 H101 YR5 38 
YR5 H1   H13 H 0 1 N N N N N N 0.598  -18.343 4.858  7.117  -1.533 -2.046 H1   YR5 39 
YR5 H211 H14 H 0 0 N N N N N N 3.554  -21.942 -3.411 0.229  4.151  -0.306 H211 YR5 40 
YR5 H2   H15 H 0 1 N N N N N N -2.847 -17.406 0.330  -5.308 -4.105 -0.403 H2   YR5 41 
YR5 H3   H16 H 0 1 N N N N N N -0.515 -14.968 -0.615 -2.662 -3.318 -1.934 H3   YR5 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YR5 C01 C02  DOUB Y N 1  
YR5 C01 C06  SING Y N 2  
YR5 C02 C03  SING Y N 3  
YR5 C02 F11  SING N N 4  
YR5 C03 C04  DOUB Y N 5  
YR5 C04 C05  SING Y N 6  
YR5 C04 C07  SING N N 7  
YR5 C05 C06  DOUB Y N 8  
YR5 C06 N10  SING N N 9  
YR5 C07 O08  DOUB N N 10 
YR5 C07 O09  SING N N 11 
YR5 C12 C13  SING N N 12 
YR5 C12 N10  SING N N 13 
YR5 C13 C14  DOUB Y N 14 
YR5 C13 C20  SING Y N 15 
YR5 C14 C15  SING N N 16 
YR5 C14 C16  SING Y N 17 
YR5 C15 O24  SING N N 18 
YR5 C16 N17  DOUB Y N 19 
YR5 C18 C19  SING N N 20 
YR5 C18 C20  DOUB Y N 21 
YR5 C18 N17  SING Y N 22 
YR5 C20 O21  SING N N 23 
YR5 O23 P22  SING N N 24 
YR5 O24 P22  SING N N 25 
YR5 O25 P22  DOUB N N 26 
YR5 O26 P22  SING N N 27 
YR5 C01 H011 SING N N 28 
YR5 C03 H031 SING N N 29 
YR5 C05 H051 SING N N 30 
YR5 C12 H122 SING N N 31 
YR5 C12 H121 SING N N 32 
YR5 C15 H152 SING N N 33 
YR5 C15 H151 SING N N 34 
YR5 C16 H161 SING N N 35 
YR5 C19 H192 SING N N 36 
YR5 C19 H191 SING N N 37 
YR5 C19 H193 SING N N 38 
YR5 N10 H101 SING N N 39 
YR5 O09 H1   SING N N 40 
YR5 O21 H211 SING N N 41 
YR5 O23 H2   SING N N 42 
YR5 O26 H3   SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YR5 SMILES           ACDLabs              12.01 "Oc1c(CNc2cc(cc(F)c2)C(=O)O)c(cnc1C)COP(=O)(O)O"                                                                                                
YR5 InChI            InChI                1.06  "InChI=1S/C15H16FN2O7P/c1-8-14(19)13(10(5-17-8)7-25-26(22,23)24)6-18-12-3-9(15(20)21)2-11(16)4-12/h2-5,18-19H,6-7H2,1H3,(H,20,21)(H2,22,23,24)" 
YR5 InChIKey         InChI                1.06  RBMMNDMOXOAIQD-UHFFFAOYSA-N                                                                                                                     
YR5 SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(F)cc(c2)C(O)=O)c1O"                                                                                              
YR5 SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(F)cc(c2)C(O)=O)c1O"                                                                                              
YR5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(cc(c2)F)C(=O)O)O"                                                                                              
YR5 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(cc(c2)F)C(=O)O)O"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YR5 "SYSTEMATIC NAME" ACDLabs              12.01 "3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid" 
YR5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-fluoranyl-5-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YR5 "Create component" 2023-12-11 RCSB 
YR5 "Initial release"  2024-05-08 RCSB 
# 
