data_YY5
# 
_chem_comp.id                                    YY5 
_chem_comp.name                                  "3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-[(propan-2-yl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H35 Cl2 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-03 
_chem_comp.pdbx_modified_date                    2019-01-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        592.517 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YY5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5UOL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YY5 CAI C1  C  0 1 N N N -11.735 13.993 7.635  4.290   -5.436 -2.212 CAI YY5 1  
YY5 OAH O1  O  0 1 N N N -12.287 12.687 7.513  3.828   -4.087 -2.295 OAH YY5 2  
YY5 CAE C2  C  0 1 Y N N -12.351 12.059 8.704  3.439   -3.495 -1.135 CAE YY5 3  
YY5 CAD C3  C  0 1 Y N N -13.545 12.139 9.374  2.975   -2.188 -1.145 CAD YY5 4  
YY5 CLL CL1 CL 0 0 N N N -14.920 12.968 8.849  2.891   -1.307 -2.639 CLL YY5 5  
YY5 CAF C4  C  0 1 Y N N -11.294 11.348 9.235  3.500   -4.200 0.057  CAF YY5 6  
YY5 CAA C5  C  0 1 Y N N -11.468 10.732 10.460 3.103   -3.598 1.242  CAA YY5 7  
YY5 OAG O2  O  0 1 N N N -10.520 9.996  11.076 3.164   -4.291 2.410  OAG YY5 8  
YY5 CAJ C6  C  0 1 N N N -9.200  10.121 10.576 3.647   -5.634 2.343  CAJ YY5 9  
YY5 CAB C7  C  0 1 Y N N -12.675 10.815 11.149 2.644   -2.289 1.235  CAB YY5 10 
YY5 CLK CL2 CL 0 0 N N N -12.742 10.046 12.602 2.147   -1.536 2.717  CLK YY5 11 
YY5 CAC C8  C  0 1 Y N N -13.720 11.531 10.576 2.577   -1.584 0.041  CAC YY5 12 
YY5 NAM N1  N  0 1 N N N -15.014 11.689 11.261 2.108   -0.264 0.032  NAM YY5 13 
YY5 CAR C9  C  0 1 N N N -15.864 10.642 11.288 0.799   -0.006 -0.140 CAR YY5 14 
YY5 OAW O3  O  0 1 N N N -15.632 9.674  10.573 0.039   -0.944 -0.285 OAW YY5 15 
YY5 CAN C10 C  0 1 N N N -14.866 12.483 12.483 3.042   0.862  0.216  CAN YY5 16 
YY5 C5  C11 C  0 1 Y N N -16.140 12.699 13.018 2.445   2.247  0.191  C5  YY5 17 
YY5 C6  C12 C  0 1 Y N N -16.347 13.860 13.735 3.210   3.377  0.351  C6  YY5 18 
YY5 N1  N2  N  0 1 Y N N -17.577 14.095 14.265 2.609   4.561  0.317  N1  YY5 19 
YY5 C2  C13 C  0 1 Y N N -18.560 13.190 14.089 1.301   4.654  0.132  C2  YY5 20 
YY5 NAX N3  N  0 1 N N N -19.834 13.492 14.675 0.715   5.907  0.103  NAX YY5 21 
YY5 CAY C14 C  0 1 N N N -20.835 12.436 14.480 1.540   7.105  0.274  CAY YY5 22 
YY5 CBA C15 C  0 1 N N N -21.424 12.594 13.075 2.134   7.512  -1.076 CBA YY5 23 
YY5 CAZ C16 C  0 1 N N N -21.964 12.643 15.542 0.677   8.246  0.816  CAZ YY5 24 
YY5 N3  N4  N  0 1 Y N N -18.359 12.062 13.382 0.534   3.583  -0.025 N3  YY5 25 
YY5 C4  C17 C  0 1 Y N N -17.188 11.799 12.801 1.068   2.368  -0.002 C4  YY5 26 
YY5 NAQ N5  N  0 1 N N N -16.963 10.645 12.088 0.292   1.234  -0.158 NAQ YY5 27 
YY5 CBB C18 C  0 1 N N S -18.133 9.826  11.572 -1.151  1.396  -0.352 CBB YY5 28 
YY5 CBF C19 C  0 1 N N N -19.277 10.544 10.858 -1.948  0.528  0.654  CBF YY5 29 
YY5 CBC C20 C  0 1 N N N -18.768 9.207  12.772 -1.601  0.791  -1.709 CBC YY5 30 
YY5 CBD C21 C  0 1 N N N -19.992 8.651  12.193 -3.079  0.428  -1.453 CBD YY5 31 
YY5 NBE N6  N  0 1 N N N -20.476 9.733  11.275 -3.249  0.292  0.001  NBE YY5 32 
YY5 CBG C22 C  0 1 N N N -21.791 9.949  10.964 -4.403  0.000  0.633  CBG YY5 33 
YY5 OBH O4  O  0 1 N N N -22.159 10.869 10.240 -4.427  -0.088 1.846  OBH YY5 34 
YY5 CBI C23 C  0 1 N N N -22.858 9.024  11.615 -5.634  -0.212 -0.144 CBI YY5 35 
YY5 CBJ C24 C  0 1 N N N -24.377 9.174  11.342 -6.773  -0.500 0.479  CBJ YY5 36 
YY5 CBK C25 C  0 1 N N N -25.398 8.209  11.990 -8.033  -0.717 -0.317 CBK YY5 37 
YY5 NBL N7  N  0 1 N N N -26.259 9.024  12.930 -8.606  -2.027 0.021  NBL YY5 38 
YY5 CBN C26 C  0 1 N N N -25.576 9.453  14.181 -9.951  -2.177 -0.551 CBN YY5 39 
YY5 CBM C27 C  0 1 N N N -27.550 8.357  13.256 -7.724  -3.117 -0.418 CBM YY5 40 
YY5 H1  H1  H  0 1 N N N -11.700 14.471 6.645  3.496   -6.068 -1.814 H1  YY5 41 
YY5 H2  H2  H  0 1 N N N -12.362 14.594 8.310  4.568   -5.787 -3.206 H2  YY5 42 
YY5 H3  H3  H  0 1 N N N -10.717 13.924 8.045  5.157   -5.484 -1.554 H3  YY5 43 
YY5 H4  H4  H  0 1 N N N -10.355 11.275 8.707  3.858   -5.220 0.064  H4  YY5 44 
YY5 H5  H5  H  0 1 N N N -8.525  9.476  11.157 3.645   -6.071 3.342  H5  YY5 45 
YY5 H6  H6  H  0 1 N N N -9.178  9.817  9.519  3.003   -6.220 1.689  H6  YY5 46 
YY5 H7  H7  H  0 1 N N N -8.873  11.168 10.663 4.663   -5.635 1.949  H7  YY5 47 
YY5 H8  H8  H  0 1 N N N -14.244 11.938 13.209 3.546   0.728  1.174  H8  YY5 48 
YY5 H9  H9  H  0 1 N N N -14.393 13.447 12.246 3.797   0.806  -0.568 H9  YY5 49 
YY5 H10 H10 H  0 1 N N N -15.545 14.570 13.873 4.277   3.304  0.502  H10 YY5 50 
YY5 H11 H11 H  0 1 N N N -19.706 13.629 15.657 -0.242  5.992  -0.031 H11 YY5 51 
YY5 H12 H12 H  0 1 N N N -20.389 11.437 14.597 2.346   6.894  0.977  H12 YY5 52 
YY5 H13 H13 H  0 1 N N N -22.179 11.813 12.903 2.748   8.404  -0.949 H13 YY5 53 
YY5 H14 H14 H  0 1 N N N -21.894 13.584 12.984 2.750   6.700  -1.462 H14 YY5 54 
YY5 H15 H15 H  0 1 N N N -20.622 12.499 12.328 1.329   7.723  -1.779 H15 YY5 55 
YY5 H16 H16 H  0 1 N N N -21.543 12.530 16.552 0.253   7.956  1.778  H16 YY5 56 
YY5 H17 H17 H  0 1 N N N -22.389 13.652 15.433 1.291   9.138  0.943  H17 YY5 57 
YY5 H18 H18 H  0 1 N N N -22.754 11.893 15.388 -0.129  8.458  0.113  H18 YY5 58 
YY5 H19 H19 H  0 1 N N N -17.749 9.032  10.915 -1.438  2.444  -0.278 H19 YY5 59 
YY5 H20 H20 H  0 1 N N N -19.141 10.522 9.767  -1.435  -0.417 0.829  H20 YY5 60 
YY5 H21 H21 H  0 1 N N N -19.365 11.587 11.196 -2.086  1.066  1.592  H21 YY5 61 
YY5 H22 H22 H  0 1 N N N -18.132 8.419  13.203 -1.518  1.529  -2.507 H22 YY5 62 
YY5 H23 H23 H  0 1 N N N -18.992 9.960  13.542 -1.018  -0.099 -1.947 H23 YY5 63 
YY5 H24 H24 H  0 1 N N N -20.735 8.440  12.976 -3.726  1.219  -1.830 H24 YY5 64 
YY5 H25 H25 H  0 1 N N N -19.777 7.729  11.633 -3.319  -0.514 -1.946 H25 YY5 65 
YY5 H26 H26 H  0 1 N N N -22.527 8.244  12.285 -5.613  -0.134 -1.221 H26 YY5 66 
YY5 H27 H27 H  0 1 N N N -24.727 9.962  10.691 -6.794  -0.578 1.556  H27 YY5 67 
YY5 H28 H28 H  0 1 N N N -26.024 7.747  11.213 -8.753  0.066  -0.080 H28 YY5 68 
YY5 H29 H29 H  0 1 N N N -24.870 7.424  12.550 -7.801  -0.687 -1.382 H29 YY5 69 
YY5 H31 H31 H  0 1 N N N -26.274 10.036 14.799 -9.897  -2.089 -1.636 H31 YY5 70 
YY5 H32 H32 H  0 1 N N N -25.245 8.566  14.740 -10.352 -3.155 -0.285 H32 YY5 71 
YY5 H33 H33 H  0 1 N N N -24.704 10.074 13.928 -10.603 -1.398 -0.155 H33 YY5 72 
YY5 H34 H34 H  0 1 N N N -28.130 8.994  13.940 -6.756  -3.021 0.075  H34 YY5 73 
YY5 H35 H35 H  0 1 N N N -28.123 8.195  12.331 -8.172  -4.075 -0.155 H35 YY5 74 
YY5 H36 H36 H  0 1 N N N -27.351 7.388  13.738 -7.589  -3.063 -1.498 H36 YY5 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YY5 OAH CAI SING N N 1  
YY5 OAH CAE SING N N 2  
YY5 CAE CAF DOUB Y N 3  
YY5 CAE CAD SING Y N 4  
YY5 CLL CAD SING N N 5  
YY5 CAF CAA SING Y N 6  
YY5 CAD CAC DOUB Y N 7  
YY5 OBH CBG DOUB N N 8  
YY5 CAA OAG SING N N 9  
YY5 CAA CAB DOUB Y N 10 
YY5 OAW CAR DOUB N N 11 
YY5 CAJ OAG SING N N 12 
YY5 CAC CAB SING Y N 13 
YY5 CAC NAM SING N N 14 
YY5 CBF NBE SING N N 15 
YY5 CBF CBB SING N N 16 
YY5 CBG NBE SING N N 17 
YY5 CBG CBI SING N N 18 
YY5 CAB CLK SING N N 19 
YY5 NAM CAR SING N N 20 
YY5 NAM CAN SING N N 21 
YY5 NBE CBD SING N N 22 
YY5 CAR NAQ SING N N 23 
YY5 CBJ CBI DOUB N E 24 
YY5 CBJ CBK SING N N 25 
YY5 CBB NAQ SING N N 26 
YY5 CBB CBC SING N N 27 
YY5 CBK NBL SING N N 28 
YY5 NAQ C4  SING N N 29 
YY5 CBD CBC SING N N 30 
YY5 CAN C5  SING N N 31 
YY5 C4  C5  DOUB Y N 32 
YY5 C4  N3  SING Y N 33 
YY5 NBL CBM SING N N 34 
YY5 NBL CBN SING N N 35 
YY5 C5  C6  SING Y N 36 
YY5 CBA CAY SING N N 37 
YY5 N3  C2  DOUB Y N 38 
YY5 C6  N1  DOUB Y N 39 
YY5 C2  N1  SING Y N 40 
YY5 C2  NAX SING N N 41 
YY5 CAY NAX SING N N 42 
YY5 CAY CAZ SING N N 43 
YY5 CAI H1  SING N N 44 
YY5 CAI H2  SING N N 45 
YY5 CAI H3  SING N N 46 
YY5 CAF H4  SING N N 47 
YY5 CAJ H5  SING N N 48 
YY5 CAJ H6  SING N N 49 
YY5 CAJ H7  SING N N 50 
YY5 CAN H8  SING N N 51 
YY5 CAN H9  SING N N 52 
YY5 C6  H10 SING N N 53 
YY5 NAX H11 SING N N 54 
YY5 CAY H12 SING N N 55 
YY5 CBA H13 SING N N 56 
YY5 CBA H14 SING N N 57 
YY5 CBA H15 SING N N 58 
YY5 CAZ H16 SING N N 59 
YY5 CAZ H17 SING N N 60 
YY5 CAZ H18 SING N N 61 
YY5 CBB H19 SING N N 62 
YY5 CBF H20 SING N N 63 
YY5 CBF H21 SING N N 64 
YY5 CBC H22 SING N N 65 
YY5 CBC H23 SING N N 66 
YY5 CBD H24 SING N N 67 
YY5 CBD H25 SING N N 68 
YY5 CBI H26 SING N N 69 
YY5 CBJ H27 SING N N 70 
YY5 CBK H28 SING N N 71 
YY5 CBK H29 SING N N 72 
YY5 CBN H31 SING N N 73 
YY5 CBN H32 SING N N 74 
YY5 CBN H33 SING N N 75 
YY5 CBM H34 SING N N 76 
YY5 CBM H35 SING N N 77 
YY5 CBM H36 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YY5 SMILES           ACDLabs              12.01 "COc1cc(OC)c(Cl)c(c1Cl)N2C(N(c3c(C2)cnc(NC(C)C)n3)C4CCN(C4)C([C@H]=CCN(C)C)=O)=O" 
YY5 InChI            InChI                1.03  
"InChI=1S/C27H35Cl2N7O4/c1-16(2)31-26-30-13-17-14-35(24-22(28)19(39-5)12-20(40-6)23(24)29)27(38)36(25(17)32-26)18-9-11-34(15-18)21(37)8-7-10-33(3)4/h7-8,12-13,16,18H,9-11,14-15H2,1-6H3,(H,30,31,32)/b8-7+/t18-/m0/s1" 
YY5 InChIKey         InChI                1.03  YDGYWUOFQSHNPV-DVBCCOPCSA-N 
YY5 SMILES_CANONICAL CACTVS               3.385 "COc1cc(OC)c(Cl)c(N2Cc3cnc(NC(C)C)nc3N([C@H]4CCN(C4)C(=O)/C=C/CN(C)C)C2=O)c1Cl" 
YY5 SMILES           CACTVS               3.385 "COc1cc(OC)c(Cl)c(N2Cc3cnc(NC(C)C)nc3N([CH]4CCN(C4)C(=O)C=CCN(C)C)C2=O)c1Cl" 
YY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)Nc1ncc2c(n1)N(C(=O)N(C2)c3c(c(cc(c3Cl)OC)OC)Cl)[C@H]4CCN(C4)C(=O)/C=C/CN(C)C" 
YY5 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)Nc1ncc2c(n1)N(C(=O)N(C2)c3c(c(cc(c3Cl)OC)OC)Cl)C4CCN(C4)C(=O)C=CCN(C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YY5 "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-[(propan-2-yl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one"  
YY5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]-1-[(3~{S})-1-[(~{E})-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl]-7-(propan-2-ylamino)-4~{H}-pyrimido[4,5-d]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YY5 "Create component" 2017-02-03 RCSB 
YY5 "Modify formula"   2017-02-03 RCSB 
YY5 "Initial release"  2019-01-16 RCSB 
# 
