data_356
#

_chem_comp.id                                   356
_chem_comp.name                                 
;8-[(3R)-3-Aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-d
ione
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H28 N8 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Linagliptin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-10-10
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.542
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    356
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2RGU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
356  C1    C1    C  0  1  Y  N  N  49.469  47.430  35.436  -0.878   0.243  -0.408  C1    356   1  
356  N2    N2    N  0  1  Y  N  N  48.132  47.720  35.828  -2.007   0.610   0.311  N2    356   2  
356  C3    C3    C  0  1  Y  N  N  49.562  47.803  34.077  -1.080  -1.072  -0.812  C3    356   3  
356  C4    C4    C  0  1  N  N  N  50.650  46.889  36.052   0.318   0.894  -0.762  C4    356   4  
356  C5    C5    C  0  1  Y  N  N  47.571  48.305  34.693  -2.837  -0.467   0.313  C5    356   5  
356  C6    C6    C  0  1  N  N  N  47.449  47.465  37.148  -2.257   1.907   0.945  C6    356   6  
356  N7    N7    N  0  1  Y  N  N  48.426  48.315  33.720  -2.272  -1.456  -0.350  N7    356   7  
356  N8    N8    N  0  1  N  N  N  50.739  47.604  33.363  -0.096  -1.701  -1.557  N8    356   8  
356  N9    N9    N  0  1  N  N  N  51.810  46.743  35.297   1.240   0.230  -1.490  N9    356   9  
356  O10   O10   O  0  1  N  N  N  50.629  46.571  37.236   0.518   2.045  -0.415  O10   356  10  
356  N11   N11   N  0  1  N  N  N  46.327  48.843  34.506  -4.070  -0.520   0.921  N11   356  11  
356  C12   C12   C  0  1  N  N  N  47.760  48.330  38.279  -2.937   2.797  -0.010  C12   356  12  
356  C13   C13   C  0  1  N  N  N  51.833  47.089  33.969   1.032  -1.039  -1.879  C13   356  13  
356  C14   C14   C  0  1  N  N  N  50.773  47.960  31.922  -0.285  -3.084  -2.000  C14   356  14  
356  C15   C15   C  0  1  N  N  N  53.053  46.202  35.930   2.486   0.904  -1.862  C15   356  15  
356  C16   C16   C  0  1  N  N  N  45.783  49.739  35.509  -4.696  -1.834   0.727  C16   356  16  
356  C17   C17   C  0  1  N  N  N  45.401  48.345  33.539  -4.941   0.560   0.440  C17   356  17  
356  C18   C18   C  0  1  N  N  N  47.946  48.971  39.233  -3.478   3.507  -0.772  C18   356  18  
356  O19   O19   O  0  1  N  N  N  52.858  46.930  33.308   1.886  -1.606  -2.533  O19   356  19  
356  C20   C20   C  0  1  Y  N  N  54.134  47.277  35.815   3.523   0.669  -0.793  C20   356  20  
356  C21   C21   C  0  1  N  N  R  45.736  51.068  34.771  -5.994  -1.906   1.535  C21   356  21  
356  C22   C22   C  0  1  N  N  N  45.041  49.604  32.677  -6.246   0.559   1.240  C22   356  22  
356  C23   C23   C  0  1  N  N  N  48.151  49.750  40.449  -4.158   4.398  -1.727  C23   356  23  
356  N24   N24   N  0  1  Y  N  N  53.748  48.543  35.901   4.304  -0.380  -0.897  N24   356  24  
356  N25   N25   N  0  1  Y  N  N  55.412  46.927  35.613   3.608   1.532   0.208  N25   356  25  
356  C26   C26   C  0  1  N  N  N  44.776  50.918  33.543  -6.940  -0.795   1.072  C26   356  26  
356  N27   N27   N  0  1  N  N  N  45.264  52.100  35.695  -6.631  -3.213   1.324  N27   356  27  
356  C28   C28   C  0  1  Y  N  N  54.625  49.551  35.788   5.236  -0.621   0.032  C28   356  28  
356  C29   C29   C  0  1  Y  N  N  56.393  47.839  35.483   4.496   1.388   1.171  C29   356  29  
356  C30   C30   C  0  1  Y  N  N  56.037  49.236  35.561   5.357   0.277   1.124  C30   356  30  
356  C31   C31   C  0  1  Y  N  N  54.213  50.903  35.879   6.092  -1.730  -0.042  C31   356  31  
356  C32   C32   C  0  1  N  N  N  57.826  47.398  35.261   4.575   2.378   2.304  C32   356  32  
356  C33   C33   C  0  1  Y  N  N  56.982  50.303  35.433   6.331   0.046   2.107  C33   356  33  
356  C34   C34   C  0  1  Y  N  N  55.158  51.918  35.752   7.023  -1.927   0.932  C34   356  34  
356  C35   C35   C  0  1  Y  N  N  56.537  51.618  35.528   7.138  -1.048   2.007  C35   356  35  
356  H61   H61   H  0  1  N  N  N  46.369  47.567  36.965  -2.888   1.766   1.823  H61   356  36  
356  H62   H62   H  0  1  N  N  N  47.814  46.474  37.456  -1.309   2.352   1.247  H62   356  37  
356  H141  H141  H  0  0  N  N  N  50.781  49.055  31.814   0.586  -3.405  -2.572  H141  356  38  
356  H142  H142  H  0  0  N  N  N  51.679  47.540  31.462  -0.406  -3.731  -1.131  H142  356  39  
356  H143  H143  H  0  0  N  N  N  49.883  47.549  31.422  -1.174  -3.147  -2.626  H143  356  40  
356  H151  H151  H  0  0  N  N  N  52.866  45.965  36.988   2.845   0.506  -2.810  H151  356  41  
356  H152  H152  H  0  0  N  N  N  53.372  45.278  35.426   2.305   1.974  -1.962  H152  356  42  
356  H161  H161  H  0  0  N  N  N  44.785  49.421  35.845  -4.918  -1.978  -0.330  H161  356  43  
356  H162  H162  H  0  0  N  N  N  46.380  49.774  36.432  -4.015  -2.615   1.064  H162  356  44  
356  H171  H171  H  0  0  N  N  N  44.508  47.921  34.021  -4.437   1.518   0.569  H171  356  45  
356  H172  H172  H  0  0  N  N  N  45.821  47.527  32.935  -5.162   0.405  -0.616  H172  356  46  
356  H21   H21   H  0  1  N  N  N  46.732  51.359  34.405  -5.771  -1.777   2.594  H21   356  47  
356  H221  H221  H  0  0  N  N  N  45.883  49.806  31.998  -6.027   0.728   2.294  H221  356  48  
356  H222  H222  H  0  0  N  N  N  44.108  49.375  32.142  -6.898   1.351   0.872  H222  356  49  
356  H231  H231  H  0  0  N  N  N  48.203  49.073  41.314  -4.344   5.363  -1.255  H231  356  50  
356  H232  H232  H  0  0  N  N  N  49.092  50.314  40.369  -3.527   4.538  -2.605  H232  356  51  
356  H233  H233  H  0  0  N  N  N  47.313  50.450  40.581  -5.106   3.952  -2.028  H233  356  52  
356  H261  H261  H  0  0  N  N  N  44.918  51.792  32.890  -7.195  -0.947   0.023  H261  356  53  
356  H262  H262  H  0  0  N  N  N  43.753  50.843  33.940  -7.849  -0.816   1.674  H262  356  54  
356  H271  H271  H  0  0  N  N  N  45.156  51.707  36.608  -7.491  -3.285   1.847  H271  356  55  
356  H272  H272  H  0  0  N  N  N  45.929  52.846  35.730  -6.791  -3.383   0.342  H272  356  56  
356  H31   H31   H  0  1  N  N  N  53.174  51.145  36.046   6.012  -2.424  -0.866  H31   356  57  
356  H321  H321  H  0  0  N  N  N  58.014  47.291  34.183   5.277   3.171   2.046  H321  356  58  
356  H322  H322  H  0  0  N  N  N  58.510  48.151  35.680   3.589   2.810   2.478  H322  356  59  
356  H323  H323  H  0  0  N  N  N  57.993  46.432  35.760   4.914   1.871   3.207  H323  356  60  
356  H33   H33   H  0  1  N  N  N  58.027  50.090  35.265   6.430   0.720   2.945  H33   356  61  
356  H34   H34   H  0  1  N  N  N  54.843  52.949  35.824   7.681  -2.782   0.873  H34   356  62  
356  H35   H35   H  0  1  N  N  N  57.247  52.426  35.431   7.888  -1.226   2.763  H35   356  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
356  C14  N8    SING  N  N   1  
356  C22  C17   SING  N  N   2  
356  C22  C26   SING  N  N   3  
356  O19  C13   DOUB  N  N   4  
356  N8   C13   SING  N  N   5  
356  N8   C3    SING  N  N   6  
356  C17  N11   SING  N  N   7  
356  C26  C21   SING  N  N   8  
356  N7   C3    SING  Y  N   9  
356  N7   C5    DOUB  Y  N  10  
356  C13  N9    SING  N  N  11  
356  C3   C1    DOUB  Y  N  12  
356  N11  C5    SING  N  N  13  
356  N11  C16   SING  N  N  14  
356  C5   N2    SING  Y  N  15  
356  C21  C16   SING  N  N  16  
356  C21  N27   SING  N  N  17  
356  C32  C29   SING  N  N  18  
356  N9   C15   SING  N  N  19  
356  N9   C4    SING  N  N  20  
356  C33  C35   DOUB  Y  N  21  
356  C33  C30   SING  Y  N  22  
356  C1   N2    SING  Y  N  23  
356  C1   C4    SING  N  N  24  
356  C29  C30   DOUB  Y  N  25  
356  C29  N25   SING  Y  N  26  
356  C35  C34   SING  Y  N  27  
356  C30  C28   SING  Y  N  28  
356  N25  C20   DOUB  Y  N  29  
356  C34  C31   DOUB  Y  N  30  
356  C28  C31   SING  Y  N  31  
356  C28  N24   DOUB  Y  N  32  
356  C20  N24   SING  Y  N  33  
356  C20  C15   SING  N  N  34  
356  N2   C6    SING  N  N  35  
356  C4   O10   DOUB  N  N  36  
356  C6   C12   SING  N  N  37  
356  C12  C18   TRIP  N  N  38  
356  C18  C23   SING  N  N  39  
356  C6   H61   SING  N  N  40  
356  C6   H62   SING  N  N  41  
356  C14  H141  SING  N  N  42  
356  C14  H142  SING  N  N  43  
356  C14  H143  SING  N  N  44  
356  C15  H151  SING  N  N  45  
356  C15  H152  SING  N  N  46  
356  C16  H161  SING  N  N  47  
356  C16  H162  SING  N  N  48  
356  C17  H171  SING  N  N  49  
356  C17  H172  SING  N  N  50  
356  C21  H21   SING  N  N  51  
356  C22  H221  SING  N  N  52  
356  C22  H222  SING  N  N  53  
356  C23  H231  SING  N  N  54  
356  C23  H232  SING  N  N  55  
356  C23  H233  SING  N  N  56  
356  C26  H261  SING  N  N  57  
356  C26  H262  SING  N  N  58  
356  N27  H271  SING  N  N  59  
356  N27  H272  SING  N  N  60  
356  C31  H31   SING  N  N  61  
356  C32  H321  SING  N  N  62  
356  C32  H322  SING  N  N  63  
356  C32  H323  SING  N  N  64  
356  C33  H33   SING  N  N  65  
356  C34  H34   SING  N  N  66  
356  C35  H35   SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
356  SMILES            ACDLabs               10.04  "O=C2N(c1nc(n(c1C(=O)N2Cc4nc3ccccc3c(n4)C)CC#CC)N5CCCC(N)C5)C"  
356  SMILES_CANONICAL  CACTVS                3.341  "CC#CCn1c(nc2N(C)C(=O)N(Cc3nc(C)c4ccccc4n3)C(=O)c12)N5CCC[C@@H](N)C5"  
356  SMILES            CACTVS                3.341  "CC#CCn1c(nc2N(C)C(=O)N(Cc3nc(C)c4ccccc4n3)C(=O)c12)N5CCC[CH](N)C5"  
356  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC#CCn1c2c(nc1N3CCC[C@H](C3)N)N(C(=O)N(C2=O)Cc4nc(c5ccccc5n4)C)C"  
356  SMILES            "OpenEye OEToolkits"  1.5.0  "CC#CCn1c2c(nc1N3CCCC(C3)N)N(C(=O)N(C2=O)Cc4nc(c5ccccc5n4)C)C"  
356  InChI             InChI                 1.03   "InChI=1S/C25H28N8O2/c1-4-5-13-32-21-22(29-24(32)31-12-8-9-17(26)14-31)30(3)25(35)33(23(21)34)15-20-27-16(2)18-10-6-7-11-19(18)28-20/h6-7,10-11,17H,8-9,12-15,26H2,1-3H3/t17-/m1/s1"  
356  InChIKey          InChI                 1.03   LTXREWYXXSTFRX-QGZVFWFLSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
356  "SYSTEMATIC NAME"  ACDLabs               10.04  "8-[(3R)-3-aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-dione"  
356  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "8-[(3R)-3-aminopiperidin-1-yl]-7-but-2-ynyl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]purine-2,6-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
356  "Create component"      2007-10-10  RCSB  
356  "Modify aromatic_flag"  2011-06-04  RCSB  
356  "Modify descriptor"     2011-06-04  RCSB  
356  "Modify synonyms"       2016-03-28  RCSB  
356  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     356
_pdbx_chem_comp_synonyms.name        Linagliptin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
