data_3D6
# 
_chem_comp.id                                    3D6 
_chem_comp.name                                  "N~2~-[4-(pyridin-3-yl)benzyl]-L-lysinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-28 
_chem_comp.pdbx_modified_date                    2015-05-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        312.409 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3D6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4U5L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3D6 C10 C1  C 0 1 N N N 2.237  37.788 11.405 0.949  1.294  1.105  C10 3D6 1  
3D6 C13 C2  C 0 1 Y N N 1.328  34.498 13.145 -2.586 1.336  -0.216 C13 3D6 2  
3D6 C15 C3  C 0 1 Y N N -0.013 32.469 12.349 -4.464 -0.296 -0.050 C15 3D6 3  
3D6 C17 C4  C 0 1 Y N N 0.158  30.222 13.132 -6.597 0.106  -1.048 C17 3D6 4  
3D6 C20 C5  C 0 1 Y N N -1.277 32.181 11.838 -4.955 -1.519 0.403  C20 3D6 5  
3D6 C21 C6  C 0 1 Y N N 0.377  34.488 10.927 -2.238 -0.723 0.989  C21 3D6 6  
3D6 C22 C7  C 0 1 Y N N 0.911  35.743 10.712 -0.941 -0.338 1.261  C22 3D6 7  
3D6 N01 N1  N 0 1 N N N 3.258  40.331 7.905  4.679  3.180  -0.083 N01 3D6 8  
3D6 C02 C8  C 0 1 N N N 3.426  39.719 9.221  3.464  2.611  -0.215 C02 3D6 9  
3D6 C03 C9  C 0 1 N N S 3.565  38.182 9.344  3.229  1.211  0.293  C03 3D6 10 
3D6 C04 C10 C 0 1 N N N 2.503  37.475 8.477  4.170  0.243  -0.426 C04 3D6 11 
3D6 C05 C11 C 0 1 N N N 2.990  36.848 7.160  4.020  -1.156 0.176  C05 3D6 12 
3D6 C06 C12 C 0 1 N N N 1.970  37.019 6.021  4.962  -2.124 -0.543 C06 3D6 13 
3D6 C07 C13 C 0 1 N N N 1.943  38.450 5.443  4.812  -3.523 0.059  C07 3D6 14 
3D6 N08 N2  N 0 1 N N N 0.985  38.630 4.350  5.716  -4.452 -0.631 N08 3D6 15 
3D6 N09 N3  N 0 1 N N N 3.544  37.710 10.744 1.836  0.824  0.033  N09 3D6 16 
3D6 C11 C14 C 0 1 Y N N 1.657  36.391 11.698 -0.468 0.879  0.804  C11 3D6 17 
3D6 C12 C15 C 0 1 Y N N 1.863  35.766 12.927 -1.289 1.713  0.068  C12 3D6 18 
3D6 C14 C16 C 0 1 Y N N 0.581  33.865 12.152 -3.069 0.113  0.247  C14 3D6 19 
3D6 C16 C17 C 0 1 Y N N 0.736  31.483 12.996 -5.306 0.536  -0.793 C16 3D6 20 
3D6 C18 C18 C 0 1 Y N N -1.115 30.000 12.612 -7.009 -1.121 -0.563 C18 3D6 21 
3D6 N19 N4  N 0 1 Y N N -1.779 30.969 11.994 -6.192 -1.885 0.136  N19 3D6 22 
3D6 O23 O1  O 0 1 N N N 3.457  40.427 10.181 2.560  3.224  -0.741 O23 3D6 23 
3D6 H1  H1  H 0 1 N N N 2.350  38.332 12.354 1.262  0.857  2.053  H1  3D6 24 
3D6 H2  H2  H 0 1 N N N 1.540  38.333 10.751 1.003  2.381  1.171  H2  3D6 25 
3D6 H3  H3  H 0 1 N N N 1.493  34.002 14.090 -3.226 1.988  -0.791 H3  3D6 26 
3D6 H4  H4  H 0 1 N N N 0.690  29.427 13.634 -7.275 0.724  -1.618 H4  3D6 27 
3D6 H5  H5  H 0 1 N N N -1.841 32.942 11.319 -4.316 -2.172 0.978  H5  3D6 28 
3D6 H6  H6  H 0 1 N N N -0.193 33.996 10.152 -2.608 -1.672 1.349  H6  3D6 29 
3D6 H7  H7  H 0 1 N N N 0.748  36.233 9.763  -0.296 -0.986 1.837  H7  3D6 30 
3D6 H8  H8  H 0 1 N N N 3.172  41.324 7.823  5.401  2.689  0.338  H8  3D6 31 
3D6 H9  H9  H 0 1 N N N 3.229  39.757 7.087  4.830  4.080  -0.410 H9  3D6 32 
3D6 H10 H10 H 0 1 N N N 4.546  37.919 8.921  3.421  1.176  1.365  H10 3D6 33 
3D6 H11 H11 H 0 1 N N N 1.730  38.216 8.227  3.919  0.211  -1.486 H11 3D6 34 
3D6 H12 H12 H 0 1 N N N 2.059  36.672 9.084  5.200  0.581  -0.307 H12 3D6 35 
3D6 H13 H13 H 0 1 N N N 3.163  35.774 7.322  4.272  -1.124 1.236  H13 3D6 36 
3D6 H14 H14 H 0 1 N N N 3.933  37.331 6.866  2.991  -1.494 0.057  H14 3D6 37 
3D6 H15 H15 H 0 1 N N N 0.969  36.779 6.408  4.710  -2.156 -1.603 H15 3D6 38 
3D6 H16 H16 H 0 1 N N N 2.228  36.319 5.212  5.991  -1.786 -0.424 H16 3D6 39 
3D6 H17 H17 H 0 1 N N N 2.948  38.690 5.066  5.063  -3.491 1.119  H17 3D6 40 
3D6 H18 H18 H 0 1 N N N 1.679  39.146 6.253  3.782  -3.861 -0.060 H18 3D6 41 
3D6 H19 H19 H 0 1 N N N 1.022  39.575 4.026  6.670  -4.126 -0.590 H19 3D6 42 
3D6 H20 H20 H 0 1 N N N 1.216  38.012 3.599  5.635  -5.384 -0.252 H20 3D6 43 
3D6 H22 H22 H 0 1 N N N 3.840  36.755 10.754 1.528  1.163  -0.866 H22 3D6 44 
3D6 H24 H24 H 0 1 N N N 2.431  36.259 13.702 -0.914 2.662  -0.287 H24 3D6 45 
3D6 H25 H25 H 0 1 N N N 1.725  31.690 13.376 -4.957 1.491  -1.159 H25 3D6 46 
3D6 H26 H26 H 0 1 N N N -1.568 29.025 12.713 -8.015 -1.460 -0.760 H26 3D6 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3D6 N08 C07 SING N N 1  
3D6 C07 C06 SING N N 2  
3D6 C06 C05 SING N N 3  
3D6 C05 C04 SING N N 4  
3D6 N01 C02 SING N N 5  
3D6 C04 C03 SING N N 6  
3D6 C02 C03 SING N N 7  
3D6 C02 O23 DOUB N N 8  
3D6 C03 N09 SING N N 9  
3D6 C22 C21 DOUB Y N 10 
3D6 C22 C11 SING Y N 11 
3D6 N09 C10 SING N N 12 
3D6 C21 C14 SING Y N 13 
3D6 C10 C11 SING N N 14 
3D6 C11 C12 DOUB Y N 15 
3D6 C20 N19 DOUB Y N 16 
3D6 C20 C15 SING Y N 17 
3D6 N19 C18 SING Y N 18 
3D6 C14 C15 SING N N 19 
3D6 C14 C13 DOUB Y N 20 
3D6 C15 C16 DOUB Y N 21 
3D6 C18 C17 DOUB Y N 22 
3D6 C12 C13 SING Y N 23 
3D6 C16 C17 SING Y N 24 
3D6 C10 H1  SING N N 25 
3D6 C10 H2  SING N N 26 
3D6 C13 H3  SING N N 27 
3D6 C17 H4  SING N N 28 
3D6 C20 H5  SING N N 29 
3D6 C21 H6  SING N N 30 
3D6 C22 H7  SING N N 31 
3D6 N01 H8  SING N N 32 
3D6 N01 H9  SING N N 33 
3D6 C03 H10 SING N N 34 
3D6 C04 H11 SING N N 35 
3D6 C04 H12 SING N N 36 
3D6 C05 H13 SING N N 37 
3D6 C05 H14 SING N N 38 
3D6 C06 H15 SING N N 39 
3D6 C06 H16 SING N N 40 
3D6 C07 H17 SING N N 41 
3D6 C07 H18 SING N N 42 
3D6 N08 H19 SING N N 43 
3D6 N08 H20 SING N N 44 
3D6 N09 H22 SING N N 45 
3D6 C12 H24 SING N N 46 
3D6 C16 H25 SING N N 47 
3D6 C18 H26 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3D6 SMILES           ACDLabs              12.01 "O=C(N)C(NCc2ccc(c1cccnc1)cc2)CCCCN"                                                                                                                 
3D6 InChI            InChI                1.03  "InChI=1S/C18H24N4O/c19-10-2-1-5-17(18(20)23)22-12-14-6-8-15(9-7-14)16-4-3-11-21-13-16/h3-4,6-9,11,13,17,22H,1-2,5,10,12,19H2,(H2,20,23)/t17-/m0/s1" 
3D6 InChIKey         InChI                1.03  KSWNFCZKQDWGEE-KRWDZBQOSA-N                                                                                                                          
3D6 SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@H](NCc1ccc(cc1)c2cccnc2)C(N)=O"                                                                                                             
3D6 SMILES           CACTVS               3.385 "NCCCC[CH](NCc1ccc(cc1)c2cccnc2)C(N)=O"                                                                                                              
3D6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cnc1)c2ccc(cc2)CN[C@@H](CCCCN)C(=O)N"                                                                                                          
3D6 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(cnc1)c2ccc(cc2)CNC(CCCCN)C(=O)N"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3D6 "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-[4-(pyridin-3-yl)benzyl]-L-lysinamide"                    
3D6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-6-azanyl-2-[(4-pyridin-3-ylphenyl)methylamino]hexanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3D6 "Other modification" 2014-07-28 RCSB 
3D6 "Modify descriptor"  2014-09-05 RCSB 
3D6 "Initial release"    2015-05-13 RCSB 
# 
