data_406
#

_chem_comp.id                                   406
_chem_comp.name                                 
;N-[3-(4,5'-BIPYRIMIDIN-2-YLAMINO)-4-METHYLPHENYL]-4-{[(3S)-3-(DIMETHYLAMINO)PYRROLIDIN-1-YL]METHYL}-3-(TRIFLUOROMETHYL)
BENZAMIDE
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H31 F3 N8 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        INNO-406
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-11-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       576.615
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    406
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
406  C1    C1    C  0  1  Y  N  N  15.655  50.546  16.618   -4.068   -4.324  -0.451  C1    406   1  
406  C2    C2    C  0  1  Y  N  N  16.772  49.680  16.841   -3.406   -3.111  -0.266  C2    406   2  
406  C3    C3    C  0  1  Y  N  N  16.658  48.568  17.703   -2.020   -3.089  -0.110  C3    406   3  
406  C4    C4    C  0  1  Y  N  N  15.408  48.274  18.395   -1.304   -4.281  -0.140  C4    406   4  
406  C5    C5    C  0  1  Y  N  N  14.247  49.167  18.171   -1.958   -5.495  -0.325  C5    406   5  
406  C6    C6    C  0  1  Y  N  N  14.422  50.263  17.290   -3.344   -5.516  -0.480  C6    406   6  
406  C7    C7    C  0  1  N  N  N  12.832  49.003  18.836   -1.204   -6.784  -0.359  C7    406   7  
406  F8    F8    F  0  1  N  N  N  12.946  49.165  20.183   -2.000   -7.876  -0.548  F8    406   8  
406  F9    F9    F  0  1  N  N  N  12.319  47.772  18.583   -0.273   -6.843  -1.355  F9    406   9  
406  F10   F10   F  0  1  N  N  N  11.942  49.965  18.430   -0.521   -7.021   0.798  F10   406  10  
406  C11   C11   C  0  1  N  N  N  15.420  47.020  19.323    0.187   -4.233   0.029  C11   406  11  
406  N12   N12   N  0  1  N  N  R  16.682  46.627  20.007    0.876   -4.093  -1.244  N12   406  12  
406  C13   C13   C  0  1  N  N  N  16.677  45.304  20.662    2.334   -4.044  -1.097  C13   406  13  
406  C14   C14   C  0  1  N  N  N  17.182  45.567  22.085    2.831   -3.277  -2.323  C14   406  14  
406  C15   C15   C  0  1  N  N  S  18.092  46.795  21.839    1.560   -2.840  -3.051  C15   406  15  
406  C16   C16   C  0  1  N  N  N  17.145  47.624  21.009    0.502   -2.869  -1.956  C16   406  16  
406  N17   N17   N  0  1  N  N  N  18.628  47.508  23.083    1.686   -1.539  -3.684  N17   406  17  
406  C18   C18   C  0  1  N  N  N  19.541  46.725  23.942    0.442   -1.170  -4.366  C18   406  18  
406  C19   C19   C  0  1  N  N  N  19.254  48.823  22.689    2.802   -1.528  -4.634  C19   406  19  
406  N20   N20   N  0  1  Y  N  N  11.545  62.016  12.162   -6.783  -10.328  -1.433  N20   406  20  
406  C21   C21   C  0  1  Y  N  N  10.626  61.380  11.413   -6.002   -9.669  -2.311  C21   406  21  
406  N22   N22   N  0  1  Y  N  N  10.670  60.101  11.016   -6.258   -8.480  -2.888  N22   406  22  
406  C23   C23   C  0  1  Y  N  N  11.745  59.364  11.404   -7.429   -7.913  -2.529  C23   406  23  
406  C24   C24   C  0  1  Y  N  N  12.852  59.902  12.229   -8.314   -8.485  -1.641  C24   406  24  
406  C25   C25   C  0  1  Y  N  N  12.629  61.315  12.563   -7.937   -9.704  -1.118  C25   406  25  
406  C26   C26   C  0  1  Y  N  N  13.947  59.119  12.615   -9.558   -7.847  -1.280  C26   406  26  
406  N27   N27   N  0  1  Y  N  N  13.994  57.803  12.215   -9.541   -6.498  -1.315  N27   406  27  
406  C28   C28   C  0  1  Y  N  N  15.014  57.032  12.558  -10.703   -5.902  -0.978  C28   406  28  
406  N29   N29   N  0  1  Y  N  N  16.061  57.422  13.272  -11.849   -6.518  -0.621  N29   406  29  
406  C30   C30   C  0  1  Y  N  N  16.106  58.723  13.721  -11.795   -7.866  -0.608  C30   406  30  
406  C31   C31   C  0  1  Y  N  N  15.070  59.649  13.425  -10.666   -8.591  -0.931  C31   406  31  
406  N32   N32   N  0  1  N  N  N  14.948  55.725  12.093  -10.722   -4.495  -1.002  N32   406  32  
406  C33   C33   C  0  1  Y  N  N  15.700  53.849  13.382   -8.396   -3.824  -1.081  C33   406  33  
406  C34   C34   C  0  1  Y  N  N  16.638  52.771  13.625   -7.435   -2.879  -1.392  C34   406  34  
406  C35   C35   C  0  1  Y  N  N  17.725  52.587  12.739   -7.772   -1.652  -1.934  C35   406  35  
406  C36   C36   C  0  1  Y  N  N  17.895  53.459  11.612   -9.115   -1.359  -2.173  C36   406  36  
406  C37   C37   C  0  1  Y  N  N  16.964  54.520  11.380  -10.099   -2.299  -1.865  C37   406  37  
406  C38   C38   C  0  1  Y  N  N  15.875  54.697  12.275   -9.739   -3.532  -1.319  C38   406  38  
406  C39   C39   C  0  1  N  N  N  17.237  55.392  10.156  -11.529   -1.960  -2.130  C39   406  39  
406  N40   N40   N  0  1  N  N  N  16.533  51.861  14.735   -6.069   -3.176  -1.150  N40   406  40  
406  C41   C41   C  0  1  N  N  N  15.660  51.753  15.737   -5.513   -4.347  -0.613  C41   406  41  
406  O42   O42   O  0  1  N  N  N  14.855  52.655  15.971   -6.192   -5.322  -0.264  O42   406  42  
406  H391  1H39  H  0  0  N  N  N  17.303  56.446  10.463  -12.083   -2.858  -2.427  H391  406  43  
406  H392  2H39  H  0  0  N  N  N  18.186  55.086   9.692  -12.007   -1.532  -1.240  H392  406  44  
406  H393  3H39  H  0  0  N  N  N  16.419  55.272   9.431  -11.617   -1.214  -2.930  H393  406  45  
406  H36   H36   H  0  1  N  N  N  18.727  53.314  10.938   -9.385   -0.396  -2.598  H36   406  46  
406  H35   H35   H  0  1  N  N  N  18.430  51.787  12.911   -7.014   -0.912  -2.178  H35   406  47  
406  H33   H33   H  0  1  N  N  N  14.866  54.001  14.052   -8.116   -4.785  -0.656  H33   406  48  
406  H32   H32   H  0  1  N  N  N  14.134  55.491  11.561  -11.616   -4.091  -0.742  H32   406  49  
406  H30   H30   H  0  1  N  N  N  16.949  59.047  14.313  -12.715   -8.364  -0.321  H30   406  50  
406  H31   H31   H  0  1  N  N  N  15.099  60.673  13.768  -10.666   -9.674  -0.909  H31   406  51  
406  H25   H25   H  0  1  N  N  N  13.372  61.821  13.162   -8.563  -10.239  -0.410  H25   406  52  
406  H21   H21   H  0  1  N  N  N   9.768  61.957  11.101   -5.068  -10.147  -2.581  H21   406  53  
406  H23   H23   H  0  1  N  N  N  11.795  58.331  11.094   -7.629   -6.954  -2.998  H23   406  54  
406  H40   H40   H  0  1  N  N  N  17.259  51.173  14.760   -5.407   -2.445  -1.398  H40   406  55  
406  H2    H2    H  0  1  N  N  N  17.711  49.879  16.345   -3.960   -2.176  -0.241  H2    406  56  
406  H3    H3    H  0  1  N  N  N  17.511  47.923  17.853   -1.513   -2.138   0.033  H3    406  57  
406  H111  1H11  H  0  0  N  N  N  14.687  47.219  20.119    0.476   -3.388   0.664  H111  406  58  
406  H112  2H11  H  0  0  N  N  N  15.218  46.183  18.639    0.558   -5.143   0.512  H112  406  59  
406  H131  1H13  H  0  0  N  N  N  15.665  44.874  20.676    2.758   -5.052  -1.057  H131  406  60  
406  H132  2H13  H  0  0  N  N  N  17.308  44.577  20.128    2.639   -3.507  -0.189  H132  406  61  
406  H141  1H14  H  0  0  N  N  N  16.365  45.781  22.790    3.432   -2.418  -2.001  H141  406  62  
406  H142  2H14  H  0  0  N  N  N  17.690  44.711  22.553    3.458   -3.899  -2.971  H142  406  63  
406  H15   H15   H  0  1  N  N  N  19.056  46.547  21.370    1.313   -3.587  -3.818  H15   406  64  
406  H161  1H16  H  0  0  N  N  N  17.646  48.484  20.540    0.572   -1.986  -1.308  H161  406  65  
406  H162  2H16  H  0  0  N  N  N  16.332  48.086  21.588   -0.510   -2.926  -2.370  H162  406  66  
406  H181  1H18  H  0  0  N  N  N  20.478  46.530  23.400   -0.400   -1.231  -3.671  H181  406  67  
406  H182  2H18  H  0  0  N  N  N  19.759  47.293  24.859    0.255   -1.845  -5.205  H182  406  68  
406  H183  3H18  H  0  0  N  N  N  19.065  45.769  24.206    0.509   -0.147  -4.748  H183  406  69  
406  H191  1H19  H  0  0  N  N  N  19.406  49.441  23.586    3.745   -1.370  -4.104  H191  406  70  
406  H192  2H19  H  0  0  N  N  N  20.223  48.637  22.203    2.670   -0.725  -5.364  H192  406  71  
406  H193  3H19  H  0  0  N  N  N  18.589  49.351  21.990    2.854   -2.481  -5.168  H193  406  72  
406  H6    H6    H  0  1  N  N  N  13.582  50.919  17.116   -3.859   -6.463  -0.624  H6    406  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
406  C1   C41   SING  N  N   1  
406  C1   C2    SING  Y  N   2  
406  C1   C6    DOUB  Y  N   3  
406  C2   C3    DOUB  Y  N   4  
406  C2   H2    SING  N  N   5  
406  C3   C4    SING  Y  N   6  
406  C3   H3    SING  N  N   7  
406  C4   C11   SING  N  N   8  
406  C4   C5    DOUB  Y  N   9  
406  C5   C6    SING  Y  N  10  
406  C5   C7    SING  N  N  11  
406  C6   H6    SING  N  N  12  
406  C7   F8    SING  N  N  13  
406  C7   F9    SING  N  N  14  
406  C7   F10   SING  N  N  15  
406  C11  N12   SING  N  N  16  
406  C11  H111  SING  N  N  17  
406  C11  H112  SING  N  N  18  
406  N12  C13   SING  N  N  19  
406  N12  C16   SING  N  N  20  
406  C13  C14   SING  N  N  21  
406  C13  H131  SING  N  N  22  
406  C13  H132  SING  N  N  23  
406  C14  C15   SING  N  N  24  
406  C14  H141  SING  N  N  25  
406  C14  H142  SING  N  N  26  
406  C15  C16   SING  N  N  27  
406  C15  N17   SING  N  N  28  
406  C15  H15   SING  N  N  29  
406  C16  H161  SING  N  N  30  
406  C16  H162  SING  N  N  31  
406  N17  C18   SING  N  N  32  
406  N17  C19   SING  N  N  33  
406  C18  H181  SING  N  N  34  
406  C18  H182  SING  N  N  35  
406  C18  H183  SING  N  N  36  
406  C19  H191  SING  N  N  37  
406  C19  H192  SING  N  N  38  
406  C19  H193  SING  N  N  39  
406  N20  C25   SING  Y  N  40  
406  N20  C21   DOUB  Y  N  41  
406  C21  N22   SING  Y  N  42  
406  C21  H21   SING  N  N  43  
406  N22  C23   DOUB  Y  N  44  
406  C23  C24   SING  Y  N  45  
406  C23  H23   SING  N  N  46  
406  C24  C26   SING  Y  N  47  
406  C24  C25   DOUB  Y  N  48  
406  C25  H25   SING  N  N  49  
406  C26  C31   DOUB  Y  N  50  
406  C26  N27   SING  Y  N  51  
406  N27  C28   DOUB  Y  N  52  
406  C28  N32   SING  N  N  53  
406  C28  N29   SING  Y  N  54  
406  N29  C30   DOUB  Y  N  55  
406  C30  C31   SING  Y  N  56  
406  C30  H30   SING  N  N  57  
406  C31  H31   SING  N  N  58  
406  N32  C38   SING  N  N  59  
406  N32  H32   SING  N  N  60  
406  C33  C34   SING  Y  N  61  
406  C33  C38   DOUB  Y  N  62  
406  C33  H33   SING  N  N  63  
406  C34  C35   DOUB  Y  N  64  
406  C34  N40   SING  N  N  65  
406  C35  C36   SING  Y  N  66  
406  C35  H35   SING  N  N  67  
406  C36  C37   DOUB  Y  N  68  
406  C36  H36   SING  N  N  69  
406  C37  C39   SING  N  N  70  
406  C37  C38   SING  Y  N  71  
406  C39  H391  SING  N  N  72  
406  C39  H392  SING  N  N  73  
406  C39  H393  SING  N  N  74  
406  N40  C41   SING  N  N  75  
406  N40  H40   SING  N  N  76  
406  C41  O42   DOUB  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
406  SMILES            ACDLabs               10.04  "FC(F)(F)c4cc(C(=O)Nc3ccc(c(Nc2nc(c1cncnc1)ccn2)c3)C)ccc4CN5CCC(N(C)C)C5"  
406  SMILES_CANONICAL  CACTVS                3.341  "CN(C)[C@H]1CCN(C1)Cc2ccc(cc2C(F)(F)F)C(=O)Nc3ccc(C)c(Nc4nccc(n4)c5cncnc5)c3"  
406  SMILES            CACTVS                3.341  "CN(C)[CH]1CCN(C1)Cc2ccc(cc2C(F)(F)F)C(=O)Nc3ccc(C)c(Nc4nccc(n4)c5cncnc5)c3"  
406  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1ccc(cc1Nc2nccc(n2)c3cncnc3)NC(=O)c4ccc(c(c4)C(F)(F)F)C[N@@]5CC[C@@H](C5)N(C)C"  
406  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1ccc(cc1Nc2nccc(n2)c3cncnc3)NC(=O)c4ccc(c(c4)C(F)(F)F)CN5CCC(C5)N(C)C"  
406  InChI             InChI                 1.03   "InChI=1S/C30H31F3N8O/c1-19-4-7-23(13-27(19)39-29-36-10-8-26(38-29)22-14-34-18-35-15-22)37-28(42)20-5-6-21(25(12-20)30(31,32)33)16-41-11-9-24(17-41)40(2)3/h4-8,10,12-15,18,24H,9,11,16-17H2,1-3H3,(H,37,42)(H,36,38,39)/t24-/m0/s1"  
406  InChIKey          InChI                 1.03   ZGBAJMQHJDFTQJ-DEOSSOPVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
406  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[3-(4,5'-bipyrimidin-2-ylamino)-4-methylphenyl]-4-{[(3S)-3-(dimethylamino)pyrrolidin-1-yl]methyl}-3-(trifluoromethyl)benzamide"  
406  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "4-[[(1S,3S)-3-dimethylaminopyrrolidin-1-yl]methyl]-N-[4-methyl-3-[(4-pyrimidin-5-ylpyrimidin-2-yl)amino]phenyl]-3-(trifluoromethyl)benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
406  "Create component"      2006-11-13  PDBJ  
406  "Modify aromatic_flag"  2011-06-04  RCSB  
406  "Modify descriptor"     2011-06-04  RCSB  
406  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     406
_pdbx_chem_comp_synonyms.name        INNO-406
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
