data_8C6
# 
_chem_comp.id                                    8C6 
_chem_comp.name                                  "[(R)-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]-chloranyl-methyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 Cl N5 O9 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-07 
_chem_comp.pdbx_modified_date                    2017-09-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8C6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5XP7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8C6 PB    P1  P  0 1 N N N 2.422  14.853 38.592 5.673  0.948  0.094  PB    8C6 1  
8C6 O1B   O1  O  0 1 N N N 2.302  14.164 37.291 5.534  1.524  -1.262 O1B   8C6 2  
8C6 O2B   O2  O  0 1 N N N 1.323  15.854 38.563 6.562  -0.392 0.019  O2B   8C6 3  
8C6 O3B   O3  O  0 1 N N N 1.986  13.854 39.589 6.392  2.016  1.060  O3B   8C6 4  
8C6 PA    P2  P  0 1 N N N 5.348  14.283 38.699 3.207  -0.663 -0.340 PA    8C6 5  
8C6 O1A   O4  O  0 1 N N N 5.145  13.171 39.653 3.069  -0.087 -1.696 O1A   8C6 6  
8C6 O2A   O5  O  0 1 N N N 5.188  13.577 37.413 4.096  -2.003 -0.414 O2A   8C6 7  
8C6 "O5'" O6  O  0 1 N N N 6.837  14.907 38.845 1.749  -1.018 0.244  "O5'" 8C6 8  
8C6 "C5'" C1  C  0 1 N N N 7.286  15.968 37.978 0.820  -1.859 -0.443 "C5'" 8C6 9  
8C6 "C4'" C2  C  0 1 N N R 8.740  15.795 37.649 -0.460 -1.987 0.386  "C4'" 8C6 10 
8C6 "O4'" O7  O  0 1 N N N 9.524  15.392 38.865 -1.128 -0.715 0.454  "O4'" 8C6 11 
8C6 "C3'" C3  C  0 1 N N S 8.922  14.731 36.643 -1.427 -2.976 -0.293 "C3'" 8C6 12 
8C6 "O3'" O8  O  0 1 N N N 8.976  15.295 35.299 -1.708 -4.076 0.574  "O3'" 8C6 13 
8C6 "C2'" C4  C  0 1 N N R 10.171 14.055 36.967 -2.708 -2.143 -0.544 "C2'" 8C6 14 
8C6 "C1'" C5  C  0 1 N N R 10.444 14.287 38.391 -2.546 -0.984 0.472  "C1'" 8C6 15 
8C6 N9    N1  N  0 1 Y N N 10.245 13.117 39.128 -3.300 0.193  0.037  N9    8C6 16 
8C6 C8    C6  C  0 1 Y N N 9.064  12.787 39.492 -2.811 1.246  -0.679 C8    8C6 17 
8C6 N7    N2  N  0 1 Y N N 9.170  11.611 40.196 -3.755 2.115  -0.893 N7    8C6 18 
8C6 C5    C7  C  0 1 Y N N 10.661 11.281 40.195 -4.907 1.678  -0.330 C5    8C6 19 
8C6 C6    C8  C  0 1 Y N N 11.481 10.275 40.694 -6.216 2.181  -0.240 C6    8C6 20 
8C6 N6    N3  N  0 1 N N N 10.915 9.158  41.436 -6.549 3.395  -0.815 N6    8C6 21 
8C6 N1    N4  N  0 1 Y N N 12.802 10.348 40.479 -7.127 1.463  0.409  N1    8C6 22 
8C6 C2    C9  C  0 1 Y N N 13.326 11.373 39.779 -6.818 0.304  0.960  C2    8C6 23 
8C6 N3    N5  N  0 1 Y N N 12.594 12.380 39.255 -5.606 -0.206 0.901  N3    8C6 24 
8C6 C4    C10 C  0 1 Y N N 11.261 12.389 39.431 -4.631 0.437  0.269  C4    8C6 25 
8C6 O     O9  O  0 1 N N N 11.258 14.623 36.166 -3.879 -2.911 -0.261 O     8C6 26 
8C6 C3A   C11 C  0 1 N N R 4.071  15.565 38.925 4.022  0.546  0.754  C3A   8C6 27 
8C6 CL2   CL1 CL 0 0 N N N 4.134  16.150 40.554 3.026  2.047  0.838  CL2   8C6 28 
8C6 H1    H1  H  0 1 N N N 0.852  15.785 37.741 6.694  -0.825 0.874  H1    8C6 29 
8C6 H2    H2  H  0 1 N N N 1.747  13.048 39.147 7.277  2.276  0.769  H2    8C6 30 
8C6 H4    H4  H  0 1 N N N 7.141  16.934 38.483 0.582  -1.422 -1.413 H4    8C6 31 
8C6 H5    H5  H  0 1 N N N 6.699  15.949 37.048 1.260  -2.845 -0.587 H5    8C6 32 
8C6 H6    H6  H  0 1 N N N 9.139  16.743 37.259 -0.218 -2.332 1.391  H6    8C6 33 
8C6 H7    H7  H  0 1 N N N 8.087  14.018 36.711 -1.011 -3.329 -1.237 H7    8C6 34 
8C6 H8    H8  H  0 1 N N N 8.155  15.731 35.105 -2.357 -4.700 0.221  H8    8C6 35 
8C6 H9    H9  H  0 1 N N N 10.081 12.976 36.771 -2.731 -1.763 -1.566 H9    8C6 36 
8C6 H10   H10 H  0 1 N N N 11.483 14.629 38.504 -2.864 -1.299 1.466  H10   8C6 37 
8C6 H11   H11 H  0 1 N N N 8.154  13.330 39.285 -1.790 1.343  -1.018 H11   8C6 38 
8C6 H12   H12 H  0 1 N N N 11.647 8.536  41.713 -5.875 3.910  -1.286 H12   8C6 39 
8C6 H13   H13 H  0 1 N N N 10.444 9.502  42.249 -7.456 3.732  -0.746 H13   8C6 40 
8C6 H14   H14 H  0 1 N N N 14.395 11.391 39.628 -7.589 -0.247 1.479  H14   8C6 41 
8C6 H15   H15 H  0 1 N N N 12.072 14.182 36.378 -3.977 -3.698 -0.813 H15   8C6 42 
8C6 H16   H16 H  0 1 N N N 4.257  16.388 38.219 4.123  0.122  1.753  H16   8C6 43 
8C6 H3    H3  H  0 1 N N N 5.010  12.658 37.576 4.228  -2.436 0.441  H3    8C6 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8C6 "O3'" "C3'" SING N N 1  
8C6 O     "C2'" SING N N 2  
8C6 "C3'" "C2'" SING N N 3  
8C6 "C3'" "C4'" SING N N 4  
8C6 "C2'" "C1'" SING N N 5  
8C6 O1B   PB    DOUB N N 6  
8C6 O2A   PA    SING N N 7  
8C6 "C4'" "C5'" SING N N 8  
8C6 "C4'" "O4'" SING N N 9  
8C6 "C5'" "O5'" SING N N 10 
8C6 "C1'" "O4'" SING N N 11 
8C6 "C1'" N9    SING N N 12 
8C6 O2B   PB    SING N N 13 
8C6 PB    C3A   SING N N 14 
8C6 PB    O3B   SING N N 15 
8C6 PA    "O5'" SING N N 16 
8C6 PA    C3A   SING N N 17 
8C6 PA    O1A   DOUB N N 18 
8C6 C3A   CL2   SING N N 19 
8C6 N9    C4    SING Y N 20 
8C6 N9    C8    SING Y N 21 
8C6 N3    C4    DOUB Y N 22 
8C6 N3    C2    SING Y N 23 
8C6 C4    C5    SING Y N 24 
8C6 C8    N7    DOUB Y N 25 
8C6 C2    N1    DOUB Y N 26 
8C6 C5    N7    SING Y N 27 
8C6 C5    C6    DOUB Y N 28 
8C6 N1    C6    SING Y N 29 
8C6 C6    N6    SING N N 30 
8C6 O2B   H1    SING N N 31 
8C6 O3B   H2    SING N N 32 
8C6 "C5'" H4    SING N N 33 
8C6 "C5'" H5    SING N N 34 
8C6 "C4'" H6    SING N N 35 
8C6 "C3'" H7    SING N N 36 
8C6 "O3'" H8    SING N N 37 
8C6 "C2'" H9    SING N N 38 
8C6 "C1'" H10   SING N N 39 
8C6 C8    H11   SING N N 40 
8C6 N6    H12   SING N N 41 
8C6 N6    H13   SING N N 42 
8C6 C2    H14   SING N N 43 
8C6 O     H15   SING N N 44 
8C6 C3A   H16   SING N N 45 
8C6 O2A   H3    SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8C6 InChI            InChI                1.03  "InChI=1S/C11H16ClN5O9P2/c12-11(27(20,21)22)28(23,24)25-1-4-6(18)7(19)10(26-4)17-3-16-5-8(13)14-2-15-9(5)17/h2-4,6-7,10-11,18-19H,1H2,(H,23,24)(H2,13,14,15)(H2,20,21,22)/t4-,6-,7-,10-,11-/m1/s1" 
8C6 InChIKey         InChI                1.03  OGUHYAYICMXXAF-IFWOQMCBSA-N                                                                                                                                                                        
8C6 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)[C@H](Cl)[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                                  
8C6 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)[CH](Cl)[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                                         
8C6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)([C@@H](P(=O)(O)O)Cl)O)O)O)N"                                                                                                               
8C6 SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(C(P(=O)(O)O)Cl)O)O)O)N"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8C6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(~{R})-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]-chloranyl-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8C6 "Create component" 2017-06-07 PDBJ 
8C6 "Initial release"  2017-09-06 RCSB 
# 
