data_B86
# 
_chem_comp.id                                    B86 
_chem_comp.name                                  "2'-deoxy-5-fluorocytidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 F N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        245.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B86 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IPX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B86 C1   C1   C 0 1 N N N 24.941 -6.782 18.074 3.254  -0.507 -0.368 C1   B86 1  
B86 N2   N2   N 0 1 N N N 25.712 -7.887 18.121 2.226  -1.000 -1.045 N2   B86 2  
B86 C3   C3   C 0 1 N N N 26.981 -7.789 18.586 0.983  -0.603 -0.780 C3   B86 3  
B86 N4   N4   N 0 1 N N N 27.532 -6.549 19.010 0.733  0.307  0.180  N4   B86 4  
B86 C5   C5   C 0 1 N N N 26.804 -5.433 18.967 1.758  0.844  0.904  C5   B86 5  
B86 C6   C6   C 0 1 N N N 25.507 -5.496 18.507 3.028  0.449  0.646  C6   B86 6  
B86 N7   N7   N 0 1 N N N 23.669 -6.808 17.630 4.534  -0.929 -0.648 N7   B86 7  
B86 F8   F8   F 0 1 N N N 24.732 -4.408 18.425 4.062  0.963  1.347  F8   B86 8  
B86 O9   O9   O 0 1 N N N 27.664 -8.822 18.621 0.054  -1.072 -1.418 O9   B86 9  
B86 C10  C10  C 0 1 N N R 28.897 -6.497 19.548 -0.646 0.723  0.449  C10  B86 10 
B86 O11  O11  O 0 1 N N N 28.807 -5.866 20.832 -1.480 -0.430 0.697  O11  B86 11 
B86 C12  C12  C 0 1 N N R 29.981 -5.106 21.112 -2.831 0.019  0.454  C12  B86 12 
B86 C13  C13  C 0 1 N N S 30.846 -5.206 19.892 -2.729 0.919  -0.798 C13  B86 13 
B86 O13  O13  O 0 1 N N N 31.834 -6.196 20.208 -3.614 2.035  -0.685 O13  B86 14 
B86 C14  C14  C 0 1 N N N 29.929 -5.684 18.786 -1.258 1.393  -0.801 C14  B86 15 
B86 C15  C15  C 0 1 N N N 29.612 -3.663 21.368 -3.747 -1.174 0.179  C15  B86 16 
B86 O16  O16  O 0 1 N N N 28.901 -3.162 20.242 -3.862 -1.969 1.361  O16  B86 17 
B86 H5   H5   H 0 1 N N N 27.225 -4.492 19.289 1.558  1.574  1.674  H5   B86 18 
B86 HN7  HN7  H 0 1 N N N 23.265 -7.669 17.320 4.686  -1.589 -1.342 HN7  B86 19 
B86 HN7A HN7A H 0 0 N N N 23.129 -5.967 17.610 5.284  -0.567 -0.151 HN7A B86 20 
B86 H10  H10  H 0 1 N N N 29.244 -7.540 19.517 -0.677 1.404  1.299  H10  B86 21 
B86 H12  H12  H 0 1 N N N 30.501 -5.483 22.005 -3.198 0.593  1.305  H12  B86 22 
B86 H13  H13  H 0 1 N N N 31.338 -4.270 19.589 -2.950 0.346  -1.699 H13  B86 23 
B86 HO13 HO13 H 0 0 N N N 32.419 -6.307 19.468 -3.591 2.633  -1.445 HO13 B86 24 
B86 H14  H14  H 0 1 N N N 30.465 -6.293 18.043 -1.207 2.478  -0.717 H14  B86 25 
B86 H14A H14A H 0 0 N N N 29.471 -4.845 18.242 -0.750 1.054  -1.704 H14A B86 26 
B86 H15  H15  H 0 1 N N N 28.979 -3.597 22.265 -4.734 -0.815 -0.114 H15  B86 27 
B86 H15A H15A H 0 0 N N N 30.525 -3.069 21.523 -3.327 -1.778 -0.625 H15A B86 28 
B86 HO16 HO16 H 0 0 N N N 28.665 -2.255 20.394 -4.429 -2.746 1.260  HO16 B86 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B86 C1  N2   DOUB N N 1  
B86 C1  C6   SING N N 2  
B86 C1  N7   SING N N 3  
B86 N2  C3   SING N N 4  
B86 C3  N4   SING N N 5  
B86 C3  O9   DOUB N N 6  
B86 N4  C5   SING N N 7  
B86 N4  C10  SING N N 8  
B86 C5  C6   DOUB N N 9  
B86 C6  F8   SING N N 10 
B86 C10 O11  SING N N 11 
B86 C10 C14  SING N N 12 
B86 O11 C12  SING N N 13 
B86 C12 C13  SING N N 14 
B86 C12 C15  SING N N 15 
B86 C13 O13  SING N N 16 
B86 C13 C14  SING N N 17 
B86 C15 O16  SING N N 18 
B86 C5  H5   SING N N 19 
B86 N7  HN7  SING N N 20 
B86 N7  HN7A SING N N 21 
B86 C10 H10  SING N N 22 
B86 C12 H12  SING N N 23 
B86 C13 H13  SING N N 24 
B86 O13 HO13 SING N N 25 
B86 C14 H14  SING N N 26 
B86 C14 H14A SING N N 27 
B86 C15 H15  SING N N 28 
B86 C15 H15A SING N N 29 
B86 O16 HO16 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B86 SMILES           ACDLabs              11.02 "FC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)CO)N"                                                                                  
B86 SMILES_CANONICAL CACTVS               3.352 "NC1=NC(=O)N(C=C1F)[C@H]2C[C@H](O)[C@@H](CO)O2"                                                                        
B86 SMILES           CACTVS               3.352 "NC1=NC(=O)N(C=C1F)[CH]2C[CH](O)[CH](CO)O2"                                                                            
B86 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)F)CO)O"                                                                        
B86 SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C=C(C(=NC2=O)N)F)CO)O"                                                                                     
B86 InChI            InChI                1.03  "InChI=1S/C9H12FN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1" 
B86 InChIKey         InChI                1.03  IDYKCXHJJGMAEV-RRKCRQDMSA-N                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B86 "SYSTEMATIC NAME" ACDLabs              11.02 "2'-deoxy-5-fluorocytidine"                                                              
B86 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "4-azanyl-5-fluoro-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B86 "Create component"  2009-08-19 RCSB 
B86 "Modify descriptor" 2011-06-04 RCSB 
# 
