data_BV6
#

_chem_comp.id                                   BV6
_chem_comp.name                                 "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)-3,5-bis(oxidanyl)oxan-4-yl]sulfanyl-oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H25 N O12 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-10
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       479.456
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BV6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6JG2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BV6  C1   C1   C   0  1  Y  N  N  28.344  32.122  35.919   3.289  -0.333   1.041  C1   BV6   1  
BV6  C2   C2   C   0  1  Y  N  N  27.687  33.236  35.329   4.069  -0.862   2.059  C2   BV6   2  
BV6  C3   C3   C   0  1  Y  N  N  28.474  34.320  35.039   5.370  -1.249   1.802  C3   BV6   3  
BV6  C4   C4   C   0  1  Y  N  N  29.854  34.229  35.340   5.895  -1.110   0.530  C4   BV6   4  
BV6  C5   C5   C   0  1  Y  N  N  30.491  33.115  35.914   5.120  -0.583  -0.486  C5   BV6   5  
BV6  O5   O1   O  -1  1  N  N  N  31.884  35.196  35.128   7.973  -1.989   1.152  O5   BV6   6  
BV6  C6   C6   C   0  1  Y  N  N  29.710  32.026  36.215   3.819  -0.195  -0.234  C6   BV6   7  
BV6  O6   O2   O   0  1  N  N  N  30.149  36.364  34.693   7.753  -1.403  -0.862  O6   BV6   8  
BV6  C1A  C7   C   0  1  N  N  S  25.239  25.776  35.933  -3.353   0.203   0.336  C1A  BV6   9  
BV6  C2A  C8   C   0  1  N  N  R  24.409  24.815  36.827  -4.758   0.361   0.924  C2A  BV6  10  
BV6  C3A  C9   C   0  1  N  N  S  23.711  23.666  36.100  -5.370  -1.026   1.144  C3A  BV6  11  
BV6  C4A  C10  C   0  1  N  N  S  23.121  24.157  34.781  -5.378  -1.785  -0.186  C4A  BV6  12  
BV6  C5A  C11  C   0  1  N  N  R  24.268  24.596  33.882  -3.949  -1.860  -0.731  C5A  BV6  13  
BV6  C6A  C12  C   0  1  N  N  N  23.903  25.221  32.532  -3.958  -2.565  -2.089  C6A  BV6  14  
BV6  O2A  O3   O   0  1  N  N  N  25.143  24.293  37.936  -4.678   1.051   2.173  O2A  BV6  15  
BV6  O4A  O4   O   0  1  N  N  N  22.462  23.030  34.193  -5.880  -3.107   0.021  O4A  BV6  16  
BV6  O5A  O5   O   0  1  N  N  N  25.194  25.489  34.534  -3.429  -0.538  -0.883  O5A  BV6  17  
BV6  O6A  O6   O   0  1  N  N  N  23.104  26.415  32.670  -2.614  -2.739  -2.544  O6A  BV6  18  
BV6  C1B  C13  C   0  1  N  N  S  26.854  30.512  35.126   1.264   0.579   0.194  C1B  BV6  19  
BV6  C2B  C14  C   0  1  N  N  R  26.590  29.005  35.372  -0.182   0.827   0.631  C2B  BV6  20  
BV6  C3B  C15  C   0  1  N  N  S  25.342  28.447  34.649  -0.957   1.457  -0.530  C3B  BV6  21  
BV6  C4B  C16  C   0  1  N  N  S  24.617  29.476  33.678  -0.251   2.746  -0.961  C4B  BV6  22  
BV6  C5B  C17  C   0  1  N  N  S  24.654  31.012  33.988   1.198   2.424  -1.337  C5B  BV6  23  
BV6  C6B  C18  C   0  1  N  N  N  24.713  32.006  32.815   1.215   1.465  -2.528  C6B  BV6  24  
BV6  O1B  O7   O   0  1  N  N  N  27.615  31.022  36.212   2.008   0.043   1.290  O1B  BV6  25  
BV6  O2B  O8   O   0  1  N  N  N  26.823  28.441  36.709  -0.197   1.713   1.752  O2B  BV6  26  
BV6  O4B  O9   O   0  1  N  N  N  23.328  28.993  33.201  -0.268   3.683   0.118  O4B  BV6  27  
BV6  O5B  O10  O   0  1  N  N  N  25.796  31.437  34.754   1.852   1.812  -0.223  O5B  BV6  28  
BV6  O6B  O11  O   0  1  N  N  N  24.976  33.346  33.298   2.563   1.256  -2.952  O6B  BV6  29  
BV6  N4   N1   N   1  1  N  N  N  30.666  35.314  35.045   7.289  -1.525   0.257  N4   BV6  30  
BV6  S1A  S1   S   0  1  N  N  N  24.450  27.376  35.814  -2.647   1.841   0.006  S1A  BV6  31  
BV6  O3A  O12  O   0  1  N  N  N  22.736  23.010  36.956  -6.708  -0.887   1.624  O3A  BV6  32  
BV6  H1   H1   H   0  1  N  N  N  26.627  33.229  35.121   3.660  -0.970   3.053  H1   BV6  33  
BV6  H2   H2   H   0  1  N  N  N  28.056  35.212  34.596   5.977  -1.661   2.594  H2   BV6  34  
BV6  H3   H3   H   0  1  N  N  N  31.553  33.115  36.111   5.533  -0.475  -1.479  H3   BV6  35  
BV6  H4   H4   H   0  1  N  N  N  30.130  31.136  36.660   3.214   0.216  -1.029  H4   BV6  36  
BV6  H5   H5   H   0  1  N  N  N  26.258  25.914  36.322  -2.720  -0.330   1.046  H5   BV6  37  
BV6  H6   H6   H   0  1  N  N  N  23.601  25.433  37.246  -5.380   0.928   0.232  H6   BV6  38  
BV6  H7   H7   H   0  1  N  N  N  24.487  22.928  35.848  -4.775  -1.576   1.873  H7   BV6  39  
BV6  H8   H8   H   0  1  N  N  N  22.427  24.992  34.957  -6.013  -1.261  -0.901  H8   BV6  40  
BV6  H9   H9   H   0  1  N  N  N  24.828  23.680  33.643  -3.324  -2.420  -0.036  H9   BV6  41  
BV6  H10  H10  H   0  1  N  N  N  24.831  25.478  32.000  -4.437  -3.539  -1.991  H10  BV6  42  
BV6  H11  H11  H   0  1  N  N  N  23.336  24.484  31.944  -4.509  -1.960  -2.809  H11  BV6  43  
BV6  H12  H12  H   0  1  N  N  N  24.584  23.715  38.442  -4.294   1.936   2.109  H12  BV6  44  
BV6  H13  H13  H   0  1  N  N  N  22.075  23.286  33.364  -6.781  -3.135   0.371  H13  BV6  45  
BV6  H14  H14  H   0  1  N  N  N  22.904  26.764  31.809  -2.543  -3.180  -3.402  H14  BV6  46  
BV6  H15  H15  H   0  1  N  N  N  27.543  30.519  34.268   1.277  -0.129  -0.635  H15  BV6  47  
BV6  H16  H16  H   0  1  N  N  N  27.401  28.546  34.788  -0.646  -0.120   0.908  H16  BV6  48  
BV6  H17  H17  H   0  1  N  N  N  25.762  27.706  33.953  -0.988   0.761  -1.368  H17  BV6  49  
BV6  H18  H18  H   0  1  N  N  N  25.247  29.413  32.778  -0.765   3.172  -1.823  H18  BV6  50  
BV6  H19  H19  H   0  1  N  N  N  23.745  31.243  34.563   1.717   3.344  -1.603  H19  BV6  51  
BV6  H20  H20  H   0  1  N  N  N  25.516  31.705  32.126   0.775   0.512  -2.234  H20  BV6  52  
BV6  H21  H21  H   0  1  N  N  N  23.750  31.995  32.283   0.638   1.893  -3.348  H21  BV6  53  
BV6  H22  H22  H   0  1  N  N  N  26.618  27.513  36.702   0.280   1.379   2.524  H22  BV6  54  
BV6  H23  H23  H   0  1  N  N  N  22.939  29.642  32.627   0.163   4.524  -0.086  H23  BV6  55  
BV6  H24  H24  H   0  1  N  N  N  25.009  33.947  32.563   2.650   0.656  -3.706  H24  BV6  56  
BV6  H25  H25  H   0  1  N  N  N  22.320  22.302  36.478  -6.779  -0.409   2.461  H25  BV6  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BV6  C1   C2   DOUB  Y  N   1  
BV6  C1   C6   SING  Y  N   2  
BV6  C1   O1B  SING  N  N   3  
BV6  C2   C3   SING  Y  N   4  
BV6  C3   C4   DOUB  Y  N   5  
BV6  C4   C5   SING  Y  N   6  
BV6  C4   N4   SING  N  N   7  
BV6  C5   C6   DOUB  Y  N   8  
BV6  O5   N4   SING  N  N   9  
BV6  O6   N4   DOUB  N  N  10  
BV6  C1A  C2A  SING  N  N  11  
BV6  C1A  O5A  SING  N  N  12  
BV6  C1A  S1A  SING  N  N  13  
BV6  C2A  C3A  SING  N  N  14  
BV6  C2A  O2A  SING  N  N  15  
BV6  C3A  C4A  SING  N  N  16  
BV6  C3A  O3A  SING  N  N  17  
BV6  C4A  C5A  SING  N  N  18  
BV6  C4A  O4A  SING  N  N  19  
BV6  C5A  C6A  SING  N  N  20  
BV6  C5A  O5A  SING  N  N  21  
BV6  C6A  O6A  SING  N  N  22  
BV6  C1B  C2B  SING  N  N  23  
BV6  C1B  O1B  SING  N  N  24  
BV6  C1B  O5B  SING  N  N  25  
BV6  C2B  C3B  SING  N  N  26  
BV6  C2B  O2B  SING  N  N  27  
BV6  C3B  C4B  SING  N  N  28  
BV6  C3B  S1A  SING  N  N  29  
BV6  C4B  C5B  SING  N  N  30  
BV6  C4B  O4B  SING  N  N  31  
BV6  C5B  C6B  SING  N  N  32  
BV6  C5B  O5B  SING  N  N  33  
BV6  C6B  O6B  SING  N  N  34  
BV6  C2   H1   SING  N  N  35  
BV6  C3   H2   SING  N  N  36  
BV6  C5   H3   SING  N  N  37  
BV6  C6   H4   SING  N  N  38  
BV6  C1A  H5   SING  N  N  39  
BV6  C2A  H6   SING  N  N  40  
BV6  C3A  H7   SING  N  N  41  
BV6  C4A  H8   SING  N  N  42  
BV6  C5A  H9   SING  N  N  43  
BV6  C6A  H10  SING  N  N  44  
BV6  C6A  H11  SING  N  N  45  
BV6  O2A  H12  SING  N  N  46  
BV6  O4A  H13  SING  N  N  47  
BV6  O6A  H14  SING  N  N  48  
BV6  C1B  H15  SING  N  N  49  
BV6  C2B  H16  SING  N  N  50  
BV6  C3B  H17  SING  N  N  51  
BV6  C4B  H18  SING  N  N  52  
BV6  C5B  H19  SING  N  N  53  
BV6  C6B  H20  SING  N  N  54  
BV6  C6B  H21  SING  N  N  55  
BV6  O2B  H22  SING  N  N  56  
BV6  O4B  H23  SING  N  N  57  
BV6  O6B  H24  SING  N  N  58  
BV6  O3A  H25  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BV6  InChI             InChI                 1.03   "InChI=1S/C18H25NO12S/c20-5-9-11(22)13(24)14(25)18(31-9)32-16-12(23)10(6-21)30-17(15(16)26)29-8-3-1-7(2-4-8)19(27)28/h1-4,9-18,20-26H,5-6H2/t9-,10+,11-,12+,13+,14-,15+,16+,17-,18+/m1/s1"  
BV6  InChIKey          InChI                 1.03   JHLJVHIWBCGKQZ-KZPLUMROSA-N  
BV6  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@@H](O)[C@@H](S[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]1O"  
BV6  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]1O"  
BV6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@H]([C@H]([C@H]([C@@H](O2)CO)O)S[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O"  
BV6  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)SC3C(C(C(C(O3)CO)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          BV6
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)-3,5-bis(oxidanyl)oxan-4-yl]sulfanyl-oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BV6  "Create component"  2019-03-10  PDBJ  
BV6  "Initial release"   2020-08-19  RCSB  
##
