data_L56
# 
_chem_comp.id                                    L56 
_chem_comp.name                                  "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H24 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-03 
_chem_comp.pdbx_modified_date                    2016-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        329.329 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L56 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JO0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L56 O8  O1  O 0 1 N N N -0.820 16.364 20.119 3.113  1.547  0.442  O8  L56 1  
L56 P5  P1  P 0 1 N N N -0.720 15.838 21.494 1.780  1.855  -0.123 P5  L56 2  
L56 O7  O2  O 0 1 N N N 0.176  16.716 22.307 0.764  2.221  1.071  O7  L56 3  
L56 O6  O3  O 0 1 N N N -2.100 15.793 22.123 1.900  3.106  -1.129 O6  L56 4  
L56 C1  C1  C 0 1 N N N -0.035 14.156 21.460 1.154  0.403  -1.030 C1  L56 5  
L56 C2  C2  C 0 1 N N R 1.034  14.067 20.364 1.030  -0.783 -0.071 C2  L56 6  
L56 C3  C3  C 0 1 N N N 2.265  13.243 20.851 2.362  -0.996 0.651  C3  L56 7  
L56 C4  C4  C 0 1 N N N 3.525  13.852 20.256 3.425  -1.360 -0.354 C4  L56 8  
L56 N9  N1  N 0 1 N N N 4.108  13.325 19.138 4.711  -1.467 0.036  N9  L56 9  
L56 C11 C5  C 0 1 N N N 3.617  12.082 18.517 5.745  -1.821 -0.941 C11 L56 10 
L56 O10 O4  O 0 1 N N N 5.224  13.964 18.583 5.063  -1.239 1.388  O10 L56 11 
L56 O12 O5  O 0 1 N N N 3.950  14.882 20.745 3.124  -1.556 -1.512 O12 L56 12 
L56 C13 C6  C 0 1 N N N 0.435  13.472 19.050 -0.066 -0.495 0.956  C13 L56 13 
L56 C14 C7  C 0 1 N N N -0.158 12.061 19.258 -1.419 -0.405 0.247  C14 L56 14 
L56 C15 C8  C 0 1 N N N -0.571 11.463 17.897 -2.516 -0.118 1.274  C15 L56 15 
L56 C16 C9  C 0 1 Y N N 0.636  10.909 17.167 -3.848 -0.030 0.575  C16 L56 16 
L56 C18 C10 C 0 1 Y N N 1.129  11.556 16.024 -4.295 1.186  0.093  C18 L56 17 
L56 C20 C11 C 0 1 Y N N 2.235  11.041 15.341 -5.515 1.266  -0.553 C20 L56 18 
L56 C21 C12 C 0 1 Y N N 2.835  9.866  15.812 -6.287 0.131  -0.716 C21 L56 19 
L56 C19 C13 C 0 1 Y N N 2.329  9.222  16.948 -5.839 -1.085 -0.234 C19 L56 20 
L56 C17 C14 C 0 1 Y N N 1.231  9.739  17.612 -4.620 -1.165 0.412  C17 L56 21 
L56 C22 C15 C 0 1 N N N 2.974  7.950  17.450 -6.680 -2.322 -0.412 C22 L56 22 
L56 H1  H1  H 0 1 N N N 0.494  17.430 21.768 -0.132 2.435  0.773  H1  L56 23 
L56 H2  H2  H 0 1 N N N -2.743 16.113 21.501 2.227  3.915  -0.714 H2  L56 24 
L56 H3  H3  H 0 1 N N N -0.839 13.436 21.249 0.176  0.632  -1.452 H3  L56 25 
L56 H4  H4  H 0 1 N N N 0.418  13.924 22.435 1.847  0.150  -1.833 H4  L56 26 
L56 H5  H5  H 0 1 N N N 1.380  15.087 20.142 0.774  -1.680 -0.634 H5  L56 27 
L56 H6  H6  H 0 1 N N N 2.166  12.199 20.519 2.647  -0.079 1.166  H6  L56 28 
L56 H7  H7  H 0 1 N N N 2.321  13.275 21.949 2.257  -1.803 1.377  H7  L56 29 
L56 H8  H8  H 0 1 N N N 2.742  11.715 19.073 6.147  -0.912 -1.389 H8  L56 30 
L56 H9  H9  H 0 1 N N N 3.331  12.282 17.474 6.546  -2.365 -0.441 H9  L56 31 
L56 H10 H10 H 0 1 N N N 4.412  11.322 18.541 5.310  -2.448 -1.719 H10 L56 32 
L56 H11 H11 H 0 1 N N N 5.430  14.740 19.091 6.008  -1.339 1.571  H11 L56 33 
L56 H12 H12 H 0 1 N N N 1.232  13.412 18.294 -0.095 -1.299 1.692  H12 L56 34 
L56 H13 H13 H 0 1 N N N -0.362 14.140 18.691 0.144  0.449  1.458  H13 L56 35 
L56 H14 H14 H 0 1 N N N -1.041 12.128 19.911 -1.391 0.398  -0.489 H14 L56 36 
L56 H15 H15 H 0 1 N N N 0.597  11.413 19.728 -1.630 -1.350 -0.255 H15 L56 37 
L56 H16 H16 H 0 1 N N N -1.035 12.249 17.283 -2.544 -0.922 2.010  H16 L56 38 
L56 H17 H17 H 0 1 N N N -1.296 10.652 18.064 -2.305 0.826  1.776  H17 L56 39 
L56 H18 H18 H 0 1 N N N 0.651  12.457 15.669 -3.693 2.073  0.220  H18 L56 40 
L56 H19 H19 H 0 1 N N N 2.620  11.541 14.465 -5.865 2.216  -0.929 H19 L56 41 
L56 H20 H20 H 0 1 N N N 3.691  9.455  15.297 -7.240 0.194  -1.220 H20 L56 42 
L56 H21 H21 H 0 1 N N N 0.837  9.230  18.479 -4.268 -2.115 0.785  H21 L56 43 
L56 H22 H22 H 0 1 N N N 3.763  8.200  18.175 -6.420 -2.806 -1.354 H22 L56 44 
L56 H23 H23 H 0 1 N N N 2.214  7.321  17.937 -6.495 -3.010 0.413  H23 L56 45 
L56 H24 H24 H 0 1 N N N 3.414  7.403  16.603 -7.735 -2.046 -0.425 H24 L56 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L56 C20 C21 DOUB Y N 1  
L56 C20 C18 SING Y N 2  
L56 C21 C19 SING Y N 3  
L56 C18 C16 DOUB Y N 4  
L56 C19 C22 SING N N 5  
L56 C19 C17 DOUB Y N 6  
L56 C16 C17 SING Y N 7  
L56 C16 C15 SING N N 8  
L56 C15 C14 SING N N 9  
L56 C11 N9  SING N N 10 
L56 O10 N9  SING N N 11 
L56 C13 C14 SING N N 12 
L56 C13 C2  SING N N 13 
L56 N9  C4  SING N N 14 
L56 O8  P5  DOUB N N 15 
L56 C4  O12 DOUB N N 16 
L56 C4  C3  SING N N 17 
L56 C2  C3  SING N N 18 
L56 C2  C1  SING N N 19 
L56 C1  P5  SING N N 20 
L56 P5  O6  SING N N 21 
L56 P5  O7  SING N N 22 
L56 O7  H1  SING N N 23 
L56 O6  H2  SING N N 24 
L56 C1  H3  SING N N 25 
L56 C1  H4  SING N N 26 
L56 C2  H5  SING N N 27 
L56 C3  H6  SING N N 28 
L56 C3  H7  SING N N 29 
L56 C11 H8  SING N N 30 
L56 C11 H9  SING N N 31 
L56 C11 H10 SING N N 32 
L56 O10 H11 SING N N 33 
L56 C13 H12 SING N N 34 
L56 C13 H13 SING N N 35 
L56 C14 H14 SING N N 36 
L56 C14 H15 SING N N 37 
L56 C15 H16 SING N N 38 
L56 C15 H17 SING N N 39 
L56 C18 H18 SING N N 40 
L56 C20 H19 SING N N 41 
L56 C21 H20 SING N N 42 
L56 C17 H21 SING N N 43 
L56 C22 H22 SING N N 44 
L56 C22 H23 SING N N 45 
L56 C22 H24 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L56 SMILES           ACDLabs              12.01 "O=P(O)(O)CC(CC(=O)N(C)O)CCCc1cc(ccc1)C"                                                                                                        
L56 InChI            InChI                1.03  "InChI=1S/C15H24NO5P/c1-12-5-3-6-13(9-12)7-4-8-14(11-22(19,20)21)10-15(17)16(2)18/h3,5-6,9,14,18H,4,7-8,10-11H2,1-2H3,(H2,19,20,21)/t14-/m1/s1" 
L56 InChIKey         InChI                1.03  LKGTWQXFDFYGBW-CQSZACIVSA-N                                                                                                                     
L56 SMILES_CANONICAL CACTVS               3.385 "CN(O)C(=O)C[C@@H](CCCc1cccc(C)c1)C[P](O)(O)=O"                                                                                                 
L56 SMILES           CACTVS               3.385 "CN(O)C(=O)C[CH](CCCc1cccc(C)c1)C[P](O)(O)=O"                                                                                                   
L56 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1cccc(c1)CCC[C@H](CC(=O)N(C)O)CP(=O)(O)O"                                                                                                    
L56 SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1cccc(c1)CCCC(CC(=O)N(C)O)CP(=O)(O)O"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L56 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid"                
L56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R})-2-[2-[methyl(oxidanyl)amino]-2-oxidanylidene-ethyl]-5-(3-methylphenyl)pentyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L56 "Create component" 2016-05-03 EBI  
L56 "Initial release"  2016-08-23 RCSB 
# 
