data_MJ6
# 
_chem_comp.id                                    MJ6 
_chem_comp.name                                  "N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(4-bromophenyl)-N,N-dimethyl-beta-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H38 Br F2 N4 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-16 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        771.606 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MJ6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UC6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MJ6 N1  N1  N  0 1 N N N 20.961 64.403 18.776 -2.052 0.736  -1.496 N1  MJ6 1  
MJ6 C2  C1  C  0 1 Y N N 23.385 57.056 15.096 7.406  0.210  -0.381 C2  MJ6 2  
MJ6 C3  C2  C  0 1 Y N N 23.590 58.376 15.507 6.022  -0.084 -0.347 C3  MJ6 3  
MJ6 C4  C3  C  0 1 Y N N 24.826 58.703 16.094 5.529  -0.863 0.707  C4  MJ6 4  
MJ6 C6  C4  C  0 1 N N N 22.759 62.006 16.284 2.588  0.158  -1.761 C6  MJ6 5  
MJ6 C10 C5  C  0 1 N N N 19.027 65.155 15.996 1.337  -0.997 -4.185 C10 MJ6 6  
MJ6 C11 C6  C  0 1 N N N 18.595 62.745 15.539 -0.050 -2.467 -2.716 C11 MJ6 7  
MJ6 C14 C7  C  0 1 N N N 22.373 66.005 19.750 -3.567 2.116  -2.738 C14 MJ6 8  
MJ6 C15 C8  C  0 1 N N N 21.160 65.831 20.629 -4.199 1.856  -1.347 C15 MJ6 9  
MJ6 C17 C9  C  0 1 N N N 19.128 64.323 20.545 -4.023 -0.611 -1.010 C17 MJ6 10 
MJ6 C18 C10 C  0 1 Y N N 19.690 63.107 22.559 -5.996 0.188  0.053  C18 MJ6 11 
MJ6 C19 C11 C  0 1 Y N N 19.798 61.744 22.301 -7.373 0.037  0.149  C19 MJ6 12 
MJ6 C21 C12 C  0 1 Y N N 21.663 61.624 23.776 -7.559 2.278  0.972  C21 MJ6 13 
MJ6 C22 C13 C  0 1 Y N N 21.537 62.964 24.091 -6.187 2.431  0.878  C22 MJ6 14 
MJ6 C24 C14 C  0 1 N N N 17.798 64.680 22.561 -5.665 -2.250 -0.265 C24 MJ6 15 
MJ6 C25 C15 C  0 1 N N N 16.896 63.785 23.402 -5.166 -2.809 1.069  C25 MJ6 16 
MJ6 C26 C16 C  0 1 N N N 17.212 63.858 24.881 -5.638 -4.232 1.226  C26 MJ6 17 
MJ6 C28 C17 C  0 1 N N N 15.363 64.944 26.074 -4.507 -4.308 3.383  C28 MJ6 18 
MJ6 C31 C18 C  0 1 Y N N 25.582 56.439 15.829 7.741  -1.029 1.634  C31 MJ6 19 
MJ6 O6  O1  O  0 1 N N N 23.528 62.900 16.642 2.680  0.830  -2.771 O6  MJ6 20 
MJ6 C5  C19 C  0 1 Y N N 23.273 60.645 16.037 3.785  -0.128 -0.957 C5  MJ6 21 
MJ6 C29 C20 C  0 1 Y N N 22.730 59.538 15.488 5.017  0.302  -1.248 C29 MJ6 22 
MJ6 S   S1  S  0 1 Y N N 24.899 60.366 16.604 3.793  -1.081 0.517  S   MJ6 23 
MJ6 C30 C21 C  0 1 Y N N 25.824 57.740 16.244 6.402  -1.332 1.695  C30 MJ6 24 
MJ6 C1  C22 C  0 1 Y N N 24.363 56.077 15.263 8.235  -0.256 0.590  C1  MJ6 25 
MJ6 C   C23 C  0 1 N N N 24.034 54.606 14.874 9.706  0.069  0.535  C   MJ6 26 
MJ6 F1  F1  F  0 1 N N N 23.160 54.117 15.770 10.078 0.323  -0.790 F1  MJ6 27 
MJ6 P   P1  P  0 1 N N N 25.480 53.459 14.688 10.042 1.543  1.553  P   MJ6 28 
MJ6 O2  O2  O  0 1 N N N 26.090 53.263 16.035 9.101  2.756  1.068  O2  MJ6 29 
MJ6 O1  O3  O  0 1 N N N 24.907 52.166 14.071 9.734  1.210  3.098  O1  MJ6 30 
MJ6 O   O4  O  0 1 N N N 26.398 54.121 13.633 11.462 1.931  1.406  O   MJ6 31 
MJ6 F   F2  F  0 1 N N N 23.331 54.554 13.740 10.441 -1.015 1.026  F   MJ6 32 
MJ6 N   N2  N  0 1 N N N 21.442 62.197 16.133 1.389  -0.324 -1.379 N   MJ6 33 
MJ6 C7  C24 C  0 1 N N S 20.843 63.474 16.478 0.196  -0.038 -2.180 C7  MJ6 34 
MJ6 C8  C25 C  0 1 N N N 19.661 63.842 15.538 0.084  -1.063 -3.311 C8  MJ6 35 
MJ6 C9  C26 C  0 1 N N N 20.195 64.013 14.116 -1.149 -0.751 -4.162 C9  MJ6 36 
MJ6 C12 C27 C  0 1 N N N 20.480 63.442 17.969 -1.028 -0.120 -1.305 C12 MJ6 37 
MJ6 O5  O5  O  0 1 N N N 19.813 62.524 18.403 -1.093 -0.956 -0.429 O5  MJ6 38 
MJ6 C16 C28 C  0 1 N N S 20.616 64.464 20.200 -3.336 0.710  -0.781 C16 MJ6 39 
MJ6 C13 C29 C  0 1 N N N 21.934 65.442 18.408 -2.066 1.858  -2.453 C13 MJ6 40 
MJ6 O4  O6  O  0 1 N N N 18.271 64.546 19.706 -3.512 -1.444 -1.729 O4  MJ6 41 
MJ6 N2  N3  N  0 1 N N N 18.791 63.912 21.801 -5.206 -0.868 -0.417 N2  MJ6 42 
MJ6 O3  O7  O  0 1 N N N 17.840 62.960 25.427 -6.308 -4.748 0.356  O3  MJ6 43 
MJ6 N3  N4  N  0 1 N N N 16.735 64.905 25.576 -5.316 -4.931 2.332  N3  MJ6 44 
MJ6 C27 C30 C  0 1 N N N 17.556 66.067 25.909 -5.775 -6.314 2.485  C27 MJ6 45 
MJ6 C23 C31 C  0 1 Y N N 20.542 63.705 23.484 -5.405 1.390  0.420  C23 MJ6 46 
MJ6 BR  BR1 BR 0 0 N N N 23.134 60.646 24.476 -8.627 3.707  1.600  BR  MJ6 47 
MJ6 C20 C32 C  0 1 Y N N 20.786 60.997 22.912 -8.151 1.082  0.609  C20 MJ6 48 
MJ6 H1  H1  H  0 1 N N N 22.445 56.788 14.637 7.808  0.805  -1.188 H1  MJ6 49 
MJ6 H2  H2  H  0 1 N N N 18.640 65.039 17.019 1.258  -1.727 -4.991 H2  MJ6 50 
MJ6 H3  H3  H  0 1 N N N 19.784 65.953 15.978 1.433  0.003  -4.609 H3  MJ6 51 
MJ6 H4  H4  H  0 1 N N N 18.200 65.418 15.320 2.216  -1.220 -3.579 H4  MJ6 52 
MJ6 H5  H5  H  0 1 N N N 18.204 62.614 16.559 0.828  -2.689 -2.110 H5  MJ6 53 
MJ6 H6  H6  H  0 1 N N N 17.774 63.031 14.865 -0.943 -2.514 -2.093 H6  MJ6 54 
MJ6 H7  H7  H  0 1 N N N 19.041 61.801 15.193 -0.130 -3.197 -3.522 H7  MJ6 55 
MJ6 H8  H8  H  0 1 N N N 23.230 65.443 20.149 -3.946 1.411  -3.477 H8  MJ6 56 
MJ6 H9  H9  H  0 1 N N N 22.642 67.068 19.660 -3.736 3.145  -3.058 H9  MJ6 57 
MJ6 H10 H10 H  0 1 N N N 21.440 65.829 21.693 -4.124 2.743  -0.717 H10 MJ6 58 
MJ6 H11 H11 H  0 1 N N N 20.422 66.626 20.446 -5.239 1.544  -1.449 H11 MJ6 59 
MJ6 H12 H12 H  0 1 N N N 19.107 61.269 21.621 -7.836 -0.897 -0.135 H12 MJ6 60 
MJ6 H13 H13 H  0 1 N N N 22.207 63.425 24.802 -5.728 3.366  1.163  H13 MJ6 61 
MJ6 H14 H14 H  0 1 N N N 18.325 65.378 23.228 -5.273 -2.855 -1.082 H14 MJ6 62 
MJ6 H15 H15 H  0 1 N N N 17.174 65.248 21.855 -6.755 -2.276 -0.284 H15 MJ6 63 
MJ6 H16 H16 H  0 1 N N N 15.852 64.096 23.250 -4.076 -2.784 1.089  H16 MJ6 64 
MJ6 H17 H17 H  0 1 N N N 17.021 62.745 23.067 -5.558 -2.204 1.887  H17 MJ6 65 
MJ6 H18 H18 H  0 1 N N N 15.194 65.889 26.610 -5.161 -3.818 4.104  H18 MJ6 66 
MJ6 H19 H19 H  0 1 N N N 14.664 64.872 25.228 -3.916 -5.072 3.888  H19 MJ6 67 
MJ6 H20 H20 H  0 1 N N N 15.198 64.099 26.759 -3.840 -3.569 2.938  H20 MJ6 68 
MJ6 H21 H21 H  0 1 N N N 26.354 55.693 15.947 8.411  -1.392 2.399  H21 MJ6 69 
MJ6 H22 H22 H  0 1 N N N 21.735 59.522 15.069 5.225  0.906  -2.118 H22 MJ6 70 
MJ6 H23 H23 H  0 1 N N N 26.776 58.005 16.679 6.022  -1.933 2.508  H23 MJ6 71 
MJ6 H24 H24 H  0 1 N N N 26.982 53.590 16.030 8.154  2.571  1.137  H24 MJ6 72 
MJ6 H25 H25 H  0 1 N N N 25.240 52.061 13.188 9.891  1.951  3.699  H25 MJ6 73 
MJ6 H26 H26 H  0 1 N N N 20.869 61.457 15.781 1.315  -0.860 -0.574 H26 MJ6 74 
MJ6 H27 H27 H  0 1 N N N 21.607 64.255 16.349 0.274  0.963  -2.604 H27 MJ6 75 
MJ6 H28 H28 H  0 1 N N N 20.963 64.800 14.104 -2.032 -0.716 -3.524 H28 MJ6 76 
MJ6 H29 H29 H  0 1 N N N 20.636 63.065 13.774 -1.016 0.213  -4.653 H29 MJ6 77 
MJ6 H30 H30 H  0 1 N N N 19.370 64.296 13.446 -1.276 -1.528 -4.916 H30 MJ6 78 
MJ6 H31 H31 H  0 1 N N N 21.172 63.684 20.741 -3.169 0.860  0.286  H31 MJ6 79 
MJ6 H32 H32 H  0 1 N N N 22.787 65.008 17.865 -1.607 2.741  -2.009 H32 MJ6 80 
MJ6 H33 H33 H  0 1 N N N 21.463 66.221 17.790 -1.548 1.580  -3.371 H33 MJ6 81 
MJ6 H34 H34 H  0 1 N N N 16.954 66.791 26.478 -6.358 -6.601 1.610  H34 MJ6 82 
MJ6 H35 H35 H  0 1 N N N 18.415 65.747 26.517 -4.913 -6.974 2.580  H35 MJ6 83 
MJ6 H36 H36 H  0 1 N N N 17.917 66.538 24.983 -6.395 -6.394 3.378  H36 MJ6 84 
MJ6 H37 H37 H  0 1 N N N 20.424 64.751 23.727 -4.334 1.510  0.346  H37 MJ6 85 
MJ6 H38 H38 H  0 1 N N N 20.872 59.938 22.717 -9.222 0.965  0.683  H38 MJ6 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MJ6 O   P   DOUB N N 1  
MJ6 F   C   SING N N 2  
MJ6 O1  P   SING N N 3  
MJ6 C9  C8  SING N N 4  
MJ6 P   C   SING N N 5  
MJ6 P   O2  SING N N 6  
MJ6 C   C1  SING N N 7  
MJ6 C   F1  SING N N 8  
MJ6 C2  C1  DOUB Y N 9  
MJ6 C2  C3  SING Y N 10 
MJ6 C1  C31 SING Y N 11 
MJ6 C29 C3  SING Y N 12 
MJ6 C29 C5  DOUB Y N 13 
MJ6 C3  C4  DOUB Y N 14 
MJ6 C8  C11 SING N N 15 
MJ6 C8  C10 SING N N 16 
MJ6 C8  C7  SING N N 17 
MJ6 C31 C30 DOUB Y N 18 
MJ6 C5  C6  SING N N 19 
MJ6 C5  S   SING Y N 20 
MJ6 C4  C30 SING Y N 21 
MJ6 C4  S   SING Y N 22 
MJ6 N   C6  SING N N 23 
MJ6 N   C7  SING N N 24 
MJ6 C6  O6  DOUB N N 25 
MJ6 C7  C12 SING N N 26 
MJ6 C12 O5  DOUB N N 27 
MJ6 C12 N1  SING N N 28 
MJ6 C13 N1  SING N N 29 
MJ6 C13 C14 SING N N 30 
MJ6 N1  C16 SING N N 31 
MJ6 O4  C17 DOUB N N 32 
MJ6 C14 C15 SING N N 33 
MJ6 C16 C17 SING N N 34 
MJ6 C16 C15 SING N N 35 
MJ6 C17 N2  SING N N 36 
MJ6 N2  C18 SING N N 37 
MJ6 N2  C24 SING N N 38 
MJ6 C19 C18 DOUB Y N 39 
MJ6 C19 C20 SING Y N 40 
MJ6 C18 C23 SING Y N 41 
MJ6 C24 C25 SING N N 42 
MJ6 C20 C21 DOUB Y N 43 
MJ6 C25 C26 SING N N 44 
MJ6 C23 C22 DOUB Y N 45 
MJ6 C21 C22 SING Y N 46 
MJ6 C21 BR  SING N N 47 
MJ6 C26 O3  DOUB N N 48 
MJ6 C26 N3  SING N N 49 
MJ6 N3  C27 SING N N 50 
MJ6 N3  C28 SING N N 51 
MJ6 C2  H1  SING N N 52 
MJ6 C10 H2  SING N N 53 
MJ6 C10 H3  SING N N 54 
MJ6 C10 H4  SING N N 55 
MJ6 C11 H5  SING N N 56 
MJ6 C11 H6  SING N N 57 
MJ6 C11 H7  SING N N 58 
MJ6 C14 H8  SING N N 59 
MJ6 C14 H9  SING N N 60 
MJ6 C15 H10 SING N N 61 
MJ6 C15 H11 SING N N 62 
MJ6 C19 H12 SING N N 63 
MJ6 C22 H13 SING N N 64 
MJ6 C24 H14 SING N N 65 
MJ6 C24 H15 SING N N 66 
MJ6 C25 H16 SING N N 67 
MJ6 C25 H17 SING N N 68 
MJ6 C28 H18 SING N N 69 
MJ6 C28 H19 SING N N 70 
MJ6 C28 H20 SING N N 71 
MJ6 C31 H21 SING N N 72 
MJ6 C29 H22 SING N N 73 
MJ6 C30 H23 SING N N 74 
MJ6 O2  H24 SING N N 75 
MJ6 O1  H25 SING N N 76 
MJ6 N   H26 SING N N 77 
MJ6 C7  H27 SING N N 78 
MJ6 C9  H28 SING N N 79 
MJ6 C9  H29 SING N N 80 
MJ6 C9  H30 SING N N 81 
MJ6 C16 H31 SING N N 82 
MJ6 C13 H32 SING N N 83 
MJ6 C13 H33 SING N N 84 
MJ6 C27 H34 SING N N 85 
MJ6 C27 H35 SING N N 86 
MJ6 C27 H36 SING N N 87 
MJ6 C23 H37 SING N N 88 
MJ6 C20 H38 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MJ6 SMILES           ACDLabs              12.01 "CN(C)C(=O)CCN(c1ccc(Br)cc1)C(=O)C1CCCN1C(=O)C(NC(=O)c1cc2cc(ccc2s1)C(F)(F)P(=O)(O)O)C(C)(C)C"                                                                                                                                                             
MJ6 InChI            InChI                1.03  "InChI=1S/C32H38BrF2N4O7PS/c1-31(2,3)27(36-28(41)25-18-19-17-20(8-13-24(19)48-25)32(34,35)47(44,45)46)30(43)39-15-6-7-23(39)29(42)38(16-14-26(40)37(4)5)22-11-9-21(33)10-12-22/h8-13,17-18,23,27H,6-7,14-16H2,1-5H3,(H,36,41)(H2,44,45,46)/t23-,27+/m0/s1" 
MJ6 InChIKey         InChI                1.03  QHZWEMYLRQTCHK-WNCULLNHSA-N                                                                                                                                                                                                                                
MJ6 SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)CCN(C(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)c2sc3ccc(cc3c2)C(F)(F)[P](O)(O)=O)C(C)(C)C)c4ccc(Br)cc4"                                                                                                                                                 
MJ6 SMILES           CACTVS               3.385 "CN(C)C(=O)CCN(C(=O)[CH]1CCCN1C(=O)[CH](NC(=O)c2sc3ccc(cc3c2)C(F)(F)[P](O)(O)=O)C(C)(C)C)c4ccc(Br)cc4"                                                                                                                                                     
MJ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N1CCC[C@H]1C(=O)N(CCC(=O)N(C)C)c2ccc(cc2)Br)NC(=O)c3cc4cc(ccc4s3)C(F)(F)P(=O)(O)O"                                                                                                                                                    
MJ6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)N1CCCC1C(=O)N(CCC(=O)N(C)C)c2ccc(cc2)Br)NC(=O)c3cc4cc(ccc4s3)C(F)(F)P(=O)(O)O"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MJ6 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(4-bromophenyl)-N,N-dimethyl-beta-alaninamide"                                                                                     
MJ6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[2-[[(2~{S})-1-[(2~{S})-2-[(4-bromophenyl)-[3-(dimethylamino)-3-oxidanylidene-propyl]carbamoyl]pyrrolidin-1-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamoyl]-1-benzothiophen-5-yl]-bis(fluoranyl)methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MJ6 "Create component" 2022-03-16 RCSB 
MJ6 "Initial release"  2023-02-15 RCSB 
# 
