data_Q56
# 
_chem_comp.id                                    Q56 
_chem_comp.name                                  "N~2~-{[(naphthalen-2-yl)methoxy]carbonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        535.610 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q56 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TIX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q56 C16 C1  C 0 1 N N N N N N 6.408  1.311  25.592 0.774  1.067  -3.282 C16 Q56 1  
Q56 C12 C2  C 0 1 N N S N N N 7.900  3.100  19.837 -4.103 -1.782 -0.705 C12 Q56 2  
Q56 C14 C3  C 0 1 N N S N N N 7.448  0.197  23.525 -0.226 0.609  -1.039 C14 Q56 3  
Q56 C15 C4  C 0 1 N N N N N N 7.635  1.185  24.672 -0.289 0.265  -2.528 C15 Q56 4  
Q56 C17 C5  C 0 1 N N N N N N 5.556  0.053  25.724 0.796  0.633  -4.749 C17 Q56 5  
Q56 C18 C6  C 0 1 N N N N N N 6.855  1.777  26.974 0.444  2.559  -3.197 C18 Q56 6  
Q56 C22 C7  C 0 1 N N N N N N 8.947  -4.286 22.803 4.448  1.456  -0.219 C22 Q56 7  
Q56 C23 C8  C 0 1 Y N N N N N 10.125 -4.086 21.840 5.673  0.834  0.401  C23 Q56 8  
Q56 C25 C9  C 0 1 Y N N N N N 11.997 -2.793 21.020 7.633  -0.523 0.213  C25 Q56 9  
Q56 C26 C10 C 0 1 Y N N N N N 12.804 -1.659 21.082 8.501  -1.330 -0.543 C26 Q56 10 
Q56 C27 C11 C 0 1 Y N N N N N 13.864 -1.504 20.188 9.599  -1.875 0.047  C27 Q56 11 
Q56 C29 C12 C 0 1 Y N N N N N 13.307 -3.616 19.160 9.060  -0.872 2.157  C29 Q56 12 
Q56 C10 C13 C 0 1 N N N N N N 7.767  -1.435 17.725 -5.714 2.665  0.909  C10 Q56 13 
Q56 C2  C14 C 0 1 N N N N N N 8.220  0.712  22.299 -1.350 -0.086 -0.315 C2  Q56 14 
Q56 C20 C15 C 0 1 N N N N N N 8.072  -2.157 23.157 2.143  0.958  -0.585 C20 Q56 15 
Q56 C24 C16 C 0 1 Y N N N N N 10.938 -2.949 21.906 6.490  0.058  -0.362 C24 Q56 16 
Q56 C28 C17 C 0 1 Y N N N N N 14.120 -2.482 19.228 9.877  -1.647 1.394  C28 Q56 17 
Q56 C30 C18 C 0 1 Y N N N N N 12.247 -3.769 20.055 7.917  -0.290 1.582  C30 Q56 18 
Q56 C31 C19 C 0 1 Y N N N N N 11.443 -4.902 19.990 7.055  0.525  2.335  C31 Q56 19 
Q56 C32 C20 C 0 1 Y N N N N N 10.387 -5.062 20.884 5.954  1.067  1.745  C32 Q56 20 
Q56 C4  C21 C 0 1 N N S N N N 8.214  1.614  20.045 -3.723 -0.506 0.049  C4  Q56 21 
Q56 C5  C22 C 0 1 N N N N N N 7.717  0.790  18.848 -4.935 0.424  0.121  C5  Q56 22 
Q56 C6  C23 C 0 1 N N S N N N 8.202  -0.700 18.939 -4.572 1.673  0.928  C6  Q56 23 
Q56 C7  C24 C 0 1 N N N N N N 9.705  -0.757 18.992 -4.401 1.320  2.423  C7  Q56 24 
Q56 C8  C25 C 0 1 N N N N N N 10.034 -1.999 18.097 -4.983 2.575  3.112  C8  Q56 25 
Q56 N19 N1  N 0 1 N N N N N N 7.988  -1.083 23.949 1.057  0.165  -0.488 N19 Q56 26 
Q56 N3  N2  N 0 1 N N N N N N 7.535  1.135  21.234 -2.629 0.169  -0.655 N3  Q56 27 
Q56 N9  N3  N 0 1 N N N N N N 8.774  -2.161 17.236 -5.925 3.150  2.145  N9  Q56 28 
Q56 O1  O1  O 0 1 N N N N N N 9.426  0.752  22.291 -1.104 -0.874 0.573  O1  Q56 29 
Q56 O11 O2  O 0 1 N N N N N N 6.669  -1.379 17.255 -6.343 2.981  -0.079 O11 Q56 30 
Q56 O13 O3  O 0 1 N N N N N N 8.470  3.717  18.968 -2.950 -2.614 -0.847 O13 Q56 31 
Q56 O21 O4  O 0 1 N N N N N N 8.751  -3.180 23.655 3.322  0.550  -0.079 O21 Q56 32 
Q56 O33 O5  O 0 1 N N N N N N 7.579  -2.190 22.054 2.057  2.042  -1.128 O33 Q56 33 
Q56 H1  H1  H 0 1 N N N N N N 5.766  2.099  25.172 1.752  0.885  -2.835 H1  Q56 34 
Q56 H2  H2  H 0 1 N N N N N N 6.916  3.413  20.215 -4.486 -1.521 -1.691 H2  Q56 35 
Q56 H3  H3  H 0 1 N N N N N N 6.379  0.109  23.279 -0.323 1.687  -0.910 H3  Q56 36 
Q56 H4  H4  H 0 1 N N N N N N 8.490  0.853  25.279 -1.276 0.515  -2.917 H4  Q56 37 
Q56 H5  H5  H 0 1 N N N N N N 7.851  2.175  24.245 -0.103 -0.800 -2.663 H5  Q56 38 
Q56 H6  H6  H 0 1 N N N N N N 4.711  0.251  26.400 1.554  1.204  -5.286 H6  Q56 39 
Q56 H7  H7  H 0 1 N N N N N N 5.174  -0.236 24.734 1.032  -0.430 -4.810 H7  Q56 40 
Q56 H8  H8  H 0 1 N N N N N N 6.169  -0.764 26.133 -0.181 0.814  -5.196 H8  Q56 41 
Q56 H9  H9  H 0 1 N N N N N N 5.978  1.867  27.632 -0.533 2.740  -3.644 H9  Q56 42 
Q56 H10 H10 H 0 1 N N N N N N 7.558  1.045  27.398 0.428  2.868  -2.151 H10 Q56 43 
Q56 H11 H11 H 0 1 N N N N N N 7.351  2.755  26.888 1.201  3.130  -3.734 H11 Q56 44 
Q56 H12 H12 H 0 1 N N N N N N 8.032  -4.443 22.213 4.223  2.396  0.284  H12 Q56 45 
Q56 H13 H13 H 0 1 N N N N N N 9.143  -5.176 23.420 4.633  1.645  -1.277 H13 Q56 46 
Q56 H14 H14 H 0 1 N N N N N N 12.609 -0.898 21.823 8.297  -1.516 -1.587 H14 Q56 47 
Q56 H15 H15 H 0 1 N N N N N N 14.488 -0.624 20.240 10.264 -2.495 -0.536 H15 Q56 48 
Q56 H16 H16 H 0 1 N N N N N N 13.499 -4.374 18.415 9.288  -0.704 3.199  H16 Q56 49 
Q56 H17 H17 H 0 1 N N N N N N 10.742 -2.190 22.649 6.261  -0.111 -1.404 H17 Q56 50 
Q56 H18 H18 H 0 1 N N N N N N 14.944 -2.363 18.540 10.755 -2.092 1.839  H18 Q56 51 
Q56 H19 H19 H 0 1 N N N N N N 11.638 -5.659 19.245 7.263  0.717  3.377  H19 Q56 52 
Q56 H20 H20 H 0 1 N N N N N N 9.770  -5.947 20.835 5.290  1.687  2.329  H20 Q56 53 
Q56 H21 H21 H 0 1 N N N N N N 9.302  1.484  20.147 -3.401 -0.763 1.059  H21 Q56 54 
Q56 H22 H22 H 0 1 N N N N N N 8.104  1.237  17.920 -5.229 0.716  -0.887 H22 Q56 55 
Q56 H23 H23 H 0 1 N N N N N N 6.617  0.808  18.833 -5.762 -0.094 0.606  H23 Q56 56 
Q56 H24 H24 H 0 1 N N N N N N 7.775  -1.164 19.840 -3.664 2.129  0.535  H24 Q56 57 
Q56 H25 H25 H 0 1 N N N N N N 10.060 -0.905 20.022 -4.976 0.431  2.683  H25 Q56 58 
Q56 H26 H26 H 0 1 N N N N N N 10.152 0.159  18.579 -3.349 1.189  2.675  H26 Q56 59 
Q56 H27 H27 H 0 1 N N N N N N 10.207 -2.893 18.713 -5.505 2.295  4.027  H27 Q56 60 
Q56 H28 H28 H 0 1 N N N N N N 10.918 -1.809 17.470 -4.188 3.286  3.334  H28 Q56 61 
Q56 H29 H29 H 0 1 N N N N N N 8.317  -1.166 24.890 1.125  -0.700 -0.055 H29 Q56 62 
Q56 H30 H30 H 0 1 N N N N N N 6.535  1.121  21.256 -2.826 0.800  -1.365 H30 Q56 63 
Q56 H31 H31 H 0 1 N N N N N N 8.716  -2.734 16.418 -6.613 3.797  2.369  H31 Q56 64 
Q56 S1  S1  S 0 1 N Y N N N N ?      ?      ?      -5.381 -2.675 0.223  S1  Q56 65 
Q56 O2  O6  O 0 1 N Y N N N N ?      ?      ?      -5.776 -3.848 -0.475 O2  Q56 66 
Q56 O4  O7  O 0 1 N Y N N N N ?      ?      ?      -5.055 -2.719 1.605  O4  Q56 67 
Q56 O3  O8  O 0 1 N Y N N N N ?      ?      ?      -6.602 -1.769 0.154  O3  Q56 68 
Q56 H32 H32 H 0 1 N N N N N N 8.167  4.617  18.968 -2.224 -2.200 -1.334 H32 Q56 69 
Q56 H33 H33 H 0 1 N Y N N N N ?      ?      ?      -7.378 -2.119 0.614  H33 Q56 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q56 N9  C10 SING N N 1  
Q56 N9  C8  SING N N 2  
Q56 O11 C10 DOUB N N 3  
Q56 C10 C6  SING N N 4  
Q56 C8  C7  SING N N 5  
Q56 C5  C6  SING N N 6  
Q56 C5  C4  SING N N 7  
Q56 C6  C7  SING N N 8  
Q56 O13 C12 SING N N 9  
Q56 C29 C28 DOUB Y N 10 
Q56 C29 C30 SING Y N 11 
Q56 C28 C27 SING Y N 12 
Q56 C12 C4  SING N N 13 
Q56 C31 C30 DOUB Y N 14 
Q56 C31 C32 SING Y N 15 
Q56 C4  N3  SING N N 16 
Q56 C30 C25 SING Y N 17 
Q56 C27 C26 DOUB Y N 18 
Q56 C32 C23 DOUB Y N 19 
Q56 C25 C26 SING Y N 20 
Q56 C25 C24 DOUB Y N 21 
Q56 N3  C2  SING N N 22 
Q56 C23 C24 SING Y N 23 
Q56 C23 C22 SING N N 24 
Q56 O33 C20 DOUB N N 25 
Q56 O1  C2  DOUB N N 26 
Q56 C2  C14 SING N N 27 
Q56 C22 O21 SING N N 28 
Q56 C20 O21 SING N N 29 
Q56 C20 N19 SING N N 30 
Q56 C14 N19 SING N N 31 
Q56 C14 C15 SING N N 32 
Q56 C15 C16 SING N N 33 
Q56 C16 C17 SING N N 34 
Q56 C16 C18 SING N N 35 
Q56 C16 H1  SING N N 36 
Q56 C12 H2  SING N N 37 
Q56 C14 H3  SING N N 38 
Q56 C15 H4  SING N N 39 
Q56 C15 H5  SING N N 40 
Q56 C17 H6  SING N N 41 
Q56 C17 H7  SING N N 42 
Q56 C17 H8  SING N N 43 
Q56 C18 H9  SING N N 44 
Q56 C18 H10 SING N N 45 
Q56 C18 H11 SING N N 46 
Q56 C22 H12 SING N N 47 
Q56 C22 H13 SING N N 48 
Q56 C26 H14 SING N N 49 
Q56 C27 H15 SING N N 50 
Q56 C29 H16 SING N N 51 
Q56 C24 H17 SING N N 52 
Q56 C28 H18 SING N N 53 
Q56 C31 H19 SING N N 54 
Q56 C32 H20 SING N N 55 
Q56 C4  H21 SING N N 56 
Q56 C5  H22 SING N N 57 
Q56 C5  H23 SING N N 58 
Q56 C6  H24 SING N N 59 
Q56 C7  H25 SING N N 60 
Q56 C7  H26 SING N N 61 
Q56 C8  H27 SING N N 62 
Q56 C8  H28 SING N N 63 
Q56 N19 H29 SING N N 64 
Q56 N3  H30 SING N N 65 
Q56 N9  H31 SING N N 66 
Q56 C12 S1  SING N N 67 
Q56 S1  O2  DOUB N N 68 
Q56 S1  O4  DOUB N N 69 
Q56 S1  O3  SING N N 70 
Q56 O13 H32 SING N N 71 
Q56 O3  H33 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q56 SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1cc2ccccc2cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                               
Q56 InChI            InChI                1.03  "InChI=1S/C25H33N3O8S/c1-15(2)11-20(28-25(32)36-14-16-7-8-17-5-3-4-6-18(17)12-16)23(30)27-21(24(31)37(33,34)35)13-19-9-10-26-22(19)29/h3-8,12,15,19-21,24,31H,9-11,13-14H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t19-,20-,21-,24-/m0/s1" 
Q56 InChIKey         InChI                1.03  KLDKNBLMZUYYLD-CIEVZJJWSA-N                                                                                                                                                                                                                      
Q56 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccc2ccccc2c1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                                          
Q56 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccc2ccccc2c1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                                 
Q56 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCc2ccc3ccccc3c2"                                                                                                                                                            
Q56 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc3ccccc3c2"                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Q56 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-1-hydroxy-2-[(N-{[(naphthalen-2-yl)methoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                       
Q56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-4-methyl-2-(naphthalen-2-ylmethoxycarbonylamino)pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q56 "Create component" 2022-01-19 RCSB 
Q56 "Initial release"  2022-05-04 RCSB 
Q56 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Q56 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
