data_T46
# 
_chem_comp.id                                    T46 
_chem_comp.name                                  dTDP-4-keto-6-deoxyglucose 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H24 N2 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-01-08 
_chem_comp.pdbx_modified_date                    2014-04-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        546.314 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T46 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4O9G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T46 C4  C4  C 0 1 N N N -5.997 -23.161 12.069 7.326  2.185  -0.064 C4  T46 1  
T46 C5  C5  C 0 1 N N R -5.693 -21.717 12.411 6.768  1.397  -1.230 C5  T46 2  
T46 C6  C6  C 0 1 N N N -6.264 -21.408 13.776 7.512  0.067  -1.357 C6  T46 3  
T46 C21 C21 C 0 1 N N N 2.797  -26.210 9.087  -5.895 0.786  -0.905 C21 T46 4  
T46 O21 O21 O 0 1 N N N 3.771  -26.545 8.389  -5.455 -0.159 -1.531 O21 T46 5  
T46 N31 N31 N 0 1 N N N 2.597  -26.874 10.235 -6.530 1.777  -1.559 N31 T46 6  
T46 C41 C41 C 0 1 N N N 1.567  -26.573 11.045 -7.023 2.832  -0.881 C41 T46 7  
T46 O41 O41 O 0 1 N N N 1.405  -27.213 12.105 -7.598 3.728  -1.472 O41 T46 8  
T46 C51 C51 C 0 1 N N N 0.722  -25.530 10.700 -6.869 2.887  0.526  C51 T46 9  
T46 C5A C5A C 0 1 N N N -0.425 -25.163 11.598 -7.412 4.055  1.308  C5A T46 10 
T46 C61 C61 C 0 1 N N N 0.957  -24.849 9.517  -6.228 1.880  1.156  C61 T46 11 
T46 N11 N11 N 0 1 N N N 1.976  -25.211 8.725  -5.747 0.824  0.431  N11 T46 12 
T46 C1, C1, C 0 1 N N R 2.231  -24.448 7.504  -5.052 -0.269 1.116  C1, T46 13 
T46 C2, C2, C 0 1 N N N 1.209  -24.616 6.392  -5.808 -1.600 0.908  C2, T46 14 
T46 C3, C3, C 0 1 N N S 1.349  -23.270 5.699  -4.686 -2.652 0.764  C3, T46 15 
T46 O3, O3, O 0 1 N N N 2.459  -23.351 4.833  -4.776 -3.626 1.806  O3, T46 16 
T46 O4, O4, O 0 1 N N N 2.205  -23.058 7.873  -3.753 -0.488 0.524  O4, T46 17 
T46 C4, C4, C 0 1 N N R 1.742  -22.279 6.767  -3.384 -1.832 0.902  C4, T46 18 
T46 C5, C5, C 0 1 N N N 0.575  -21.406 7.187  -2.310 -2.375 -0.043 C5, T46 19 
T46 O5, O5, O 0 1 N N N -0.525 -22.271 7.394  -1.082 -1.680 0.182  O5, T46 20 
T46 P   P   P 0 1 N N N -2.003 -21.684 7.446  0.267  -1.994 -0.640 P   T46 21 
T46 O1P O1P O 0 1 N N N -2.244 -20.744 6.294  0.591  -3.434 -0.524 O1P T46 22 
T46 O2P O2P O 0 1 N N N -2.942 -22.830 7.539  0.051  -1.616 -2.190 O2P T46 23 
T46 OPP OPP O 0 1 N N N -1.976 -20.814 8.796  1.478  -1.121 -0.038 OPP T46 24 
T46 P2  P2  P 0 1 N N N -3.234 -20.027 9.410  3.080  -1.182 -0.182 P2  T46 25 
T46 O4P O4P O 0 1 N N N -2.709 -19.139 10.496 3.651  -2.409 0.690  O4P T46 26 
T46 O3P O3P O 0 1 N N N -4.016 -19.391 8.274  3.441  -1.378 -1.604 O3P T46 27 
T46 O1  O1  O 0 1 N N N -4.102 -21.231 10.058 3.720  0.197  0.349  O1  T46 28 
T46 C1  C1  C 0 1 N N R -3.596 -21.873 11.249 5.114  0.495  0.256  C1  T46 29 
T46 C2  C2  C 0 1 N N R -3.681 -23.405 11.127 5.525  1.393  1.424  C2  T46 30 
T46 O2  O2  O 0 1 N N N -3.020 -23.730 9.893  4.802  2.624  1.357  O2  T46 31 
T46 C3  C3  C 0 1 N N R -5.126 -23.885 11.083 7.029  1.683  1.334  C3  T46 32 
T46 O3  O3  O 0 1 N N N -5.266 -25.293 11.265 7.767  0.484  1.584  O3  T46 33 
T46 O4  O4  O 0 1 N N N -7.000 -23.735 12.527 7.990  3.178  -0.243 O4  T46 34 
T46 O5  O5  O 0 1 N N N -4.291 -21.392 12.390 5.379  1.151  -0.984 O5  T46 35 
T46 H1  H1  H 0 1 N N N -6.213 -21.083 11.678 6.882  1.971  -2.150 H1  T46 36 
T46 H2  H2  H 0 1 N N N -6.049 -20.361 14.035 7.387  -0.509 -0.440 H2  T46 37 
T46 H3  H3  H 0 1 N N N -7.352 -21.566 13.762 7.107  -0.498 -2.197 H3  T46 38 
T46 H4  H4  H 0 1 N N N -5.806 -22.072 14.524 8.572  0.258  -1.525 H4  T46 39 
T46 H5  H5  H 0 1 N N N 3.226  -27.607 10.493 -6.631 1.732  -2.523 H5  T46 40 
T46 H6  H6  H 0 1 N N N -0.429 -25.824 12.477 -7.891 4.758  0.626  H6  T46 41 
T46 H7  H7  H 0 1 N N N -0.314 -24.119 11.926 -8.142 3.698  2.034  H7  T46 42 
T46 H8  H8  H 0 1 N N N -1.371 -25.277 11.049 -6.595 4.554  1.830  H8  T46 43 
T46 H9  H9  H 0 1 N N N 0.319  -24.026 9.232  -6.101 1.905  2.228  H9  T46 44 
T46 H10 H10 H 0 1 N N N 3.225  -24.709 7.111  -4.953 -0.049 2.178  H10 T46 45 
T46 H11 H11 H 0 1 N N N 0.194  -24.767 6.789  -6.432 -1.824 1.774  H11 T46 46 
T46 H12 H12 H 0 1 N N N 1.468  -25.449 5.722  -6.414 -1.558 0.003  H12 T46 47 
T46 H13 H13 H 0 1 N N N 0.418  -22.976 5.191  -4.734 -3.131 -0.214 H13 T46 48 
T46 H14 H14 H 0 1 N N N 2.572  -22.521 4.384  -5.602 -4.129 1.803  H14 T46 49 
T46 H15 H15 H 0 1 N N N 2.551  -21.639 6.386  -3.028 -1.855 1.932  H15 T46 50 
T46 H16 H16 H 0 1 N N N 0.817  -20.871 8.117  -2.165 -3.439 0.144  H16 T46 51 
T46 H17 H17 H 0 1 N N N 0.342  -20.678 6.396  -2.627 -2.227 -1.076 H17 T46 52 
T46 H18 H18 H 0 1 N N N -3.570 -22.784 6.827  -0.165 -0.686 -2.341 H18 T46 53 
T46 H19 H19 H 0 1 N N N -2.952 -18.239 10.315 3.452  -2.346 1.634  H19 T46 54 
T46 H20 H20 H 0 1 N N N -2.532 -21.616 11.353 5.686  -0.432 0.305  H20 T46 55 
T46 H21 H21 H 0 1 N N N -3.165 -23.868 11.981 5.304  0.892  2.366  H21 T46 56 
T46 H22 H22 H 0 1 N N N -2.120 -23.428 9.926  5.014  3.244  2.068  H22 T46 57 
T46 H23 H23 H 0 1 N N N -5.507 -23.638 10.081 7.303  2.444  2.065  H23 T46 58 
T46 H24 H24 H 0 1 N N N -6.000 -25.467 11.843 8.727  0.598  1.542  H24 T46 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T46 O3, C3, SING N N 1  
T46 C3, C2, SING N N 2  
T46 C3, C4, SING N N 3  
T46 O1P P   DOUB N N 4  
T46 C2, C1, SING N N 5  
T46 C4, C5, SING N N 6  
T46 C4, O4, SING N N 7  
T46 C5, O5, SING N N 8  
T46 O5, P   SING N N 9  
T46 P   O2P SING N N 10 
T46 P   OPP SING N N 11 
T46 C1, O4, SING N N 12 
T46 C1, N11 SING N N 13 
T46 O3P P2  DOUB N N 14 
T46 O21 C21 DOUB N N 15 
T46 N11 C21 SING N N 16 
T46 N11 C61 SING N N 17 
T46 OPP P2  SING N N 18 
T46 C21 N31 SING N N 19 
T46 P2  O1  SING N N 20 
T46 P2  O4P SING N N 21 
T46 C61 C51 DOUB N N 22 
T46 O2  C2  SING N N 23 
T46 O1  C1  SING N N 24 
T46 N31 C41 SING N N 25 
T46 C51 C41 SING N N 26 
T46 C51 C5A SING N N 27 
T46 C41 O41 DOUB N N 28 
T46 C3  C2  SING N N 29 
T46 C3  O3  SING N N 30 
T46 C3  C4  SING N N 31 
T46 C2  C1  SING N N 32 
T46 C1  O5  SING N N 33 
T46 C4  C5  SING N N 34 
T46 C4  O4  DOUB N N 35 
T46 O5  C5  SING N N 36 
T46 C5  C6  SING N N 37 
T46 C5  H1  SING N N 38 
T46 C6  H2  SING N N 39 
T46 C6  H3  SING N N 40 
T46 C6  H4  SING N N 41 
T46 N31 H5  SING N N 42 
T46 C5A H6  SING N N 43 
T46 C5A H7  SING N N 44 
T46 C5A H8  SING N N 45 
T46 C61 H9  SING N N 46 
T46 C1, H10 SING N N 47 
T46 C2, H11 SING N N 48 
T46 C2, H12 SING N N 49 
T46 C3, H13 SING N N 50 
T46 O3, H14 SING N N 51 
T46 C4, H15 SING N N 52 
T46 C5, H16 SING N N 53 
T46 C5, H17 SING N N 54 
T46 O2P H18 SING N N 55 
T46 O4P H19 SING N N 56 
T46 C1  H20 SING N N 57 
T46 C2  H21 SING N N 58 
T46 O2  H22 SING N N 59 
T46 C3  H23 SING N N 60 
T46 O3  H24 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T46 SMILES           ACDLabs              12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(=O)C(O)C3O)C)O)O)C" 
T46 InChI            InChI                1.03  
"InChI=1S/C16H24N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h4,7-10,12-13,15,19,21-22H,3,5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t7-,8+,9-,10-,12+,13-,15-/m1/s1" 
T46 InChIKey         InChI                1.03  PSXWNITXWWECNY-UCBTUHGZSA-N 
T46 SMILES_CANONICAL CACTVS               3.385 "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)C1=O" 
T46 SMILES           CACTVS               3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)C1=O" 
T46 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1C(=O)[C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O" 
T46 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(=O)C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T46 "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
T46 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,6R)-6-methyl-3,4-bis(oxidanyl)-5-oxidanylidene-oxan-2-yl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T46 "Create component" 2014-01-08 RCSB 
T46 "Initial release"  2014-04-09 RCSB 
# 
