data_UB6
# 
_chem_comp.id                                    UB6 
_chem_comp.name                                  "(5P)-5-[4-methyl-6-(2-methylpropyl)pyridin-3-yl]-4-oxo-N-[(1R,2S)-2-propanamidocyclopentyl]-4,5-dihydro-3H-1-thia-3,5,8-triazaacenaphthylene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H32 N6 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        520.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UB6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8E2M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UB6 C10  C1  C 0 1 N N R N N N -18.448 -11.337 7.473  -5.277 -1.522 0.414  C10  UB6 1  
UB6 C20  C2  C 0 1 Y N N N N N -15.668 -17.584 5.697  1.673  0.539  -0.756 C20  UB6 2  
UB6 C21  C3  C 0 1 Y N N N N N -16.876 -16.877 5.778  0.272  0.570  -0.832 C21  UB6 3  
UB6 C22  C4  C 0 1 Y N N N N N -17.088 -15.536 6.259  -0.544 -0.419 -0.172 C22  UB6 4  
UB6 C24  C5  C 0 1 N N N N N N -14.617 -15.632 6.599  1.490  -1.397 0.591  C24  UB6 5  
UB6 C28  C6  C 0 1 Y N N N N N -12.777 -18.003 7.378  4.318  0.101  1.116  C28  UB6 6  
UB6 C01  C7  C 0 1 N N N N N N -18.924 -12.046 13.195 -5.025 3.825  1.795  C01  UB6 7  
UB6 C02  C8  C 0 1 N N N N N N -17.769 -12.009 12.218 -5.573 3.019  0.616  C02  UB6 8  
UB6 C03  C9  C 0 1 N N N N N N -18.026 -11.155 10.980 -5.823 1.598  1.051  C03  UB6 9  
UB6 O04  O1  O 0 1 N N N N N N -18.759 -10.183 11.030 -5.588 1.263  2.193  O04  UB6 10 
UB6 N05  N1  N 0 1 N N N N N N -17.447 -11.496 9.784  -6.310 0.700  0.172  N05  UB6 11 
UB6 C06  C10 C 0 1 N N S N N N -17.601 -10.714 8.585  -6.554 -0.682 0.596  C06  UB6 12 
UB6 C07  C11 C 0 1 N N N N N N -16.279 -10.534 7.843  -7.635 -1.325 -0.296 C07  UB6 13 
UB6 C08  C12 C 0 1 N N N N N N -16.672 -10.244 6.394  -7.166 -2.791 -0.466 C08  UB6 14 
UB6 C09  C13 C 0 1 N N N N N N -18.174 -10.405 6.315  -5.628 -2.646 -0.582 C09  UB6 15 
UB6 N11  N2  N 0 1 N N N N N N -18.040 -12.675 7.088  -4.201 -0.689 -0.127 N11  UB6 16 
UB6 C12  C14 C 0 1 N N N N N N -18.809 -13.738 6.661  -2.915 -0.994 0.137  C12  UB6 17 
UB6 O13  O2  O 0 1 N N N N N N -20.039 -13.565 6.614  -2.648 -1.962 0.826  O13  UB6 18 
UB6 C14  C15 C 0 1 Y N N N N N -18.360 -15.051 6.250  -1.874 -0.188 -0.386 C14  UB6 19 
UB6 S15  S1  S 0 1 Y N N N N N -19.413 -16.333 5.605  -2.133 1.230  -1.389 S15  UB6 20 
UB6 C16  C16 C 0 1 Y N N N N N -18.065 -17.480 5.367  -0.411 1.541  -1.538 C16  UB6 21 
UB6 N17  N3  N 0 1 Y N N N N N -18.129 -18.727 4.877  0.303  2.479  -2.168 N17  UB6 22 
UB6 C18  C17 C 0 1 Y N N N N N -16.965 -19.394 4.811  1.621  2.486  -2.121 C18  UB6 23 
UB6 C19  C18 C 0 1 Y N N N N N -15.722 -18.876 5.195  2.359  1.533  -1.431 C19  UB6 24 
UB6 N23  N4  N 0 1 N N N N N N -15.874 -14.988 6.632  0.146  -1.407 0.546  N23  UB6 25 
UB6 O25  O3  O 0 1 N N N N N N -13.632 -15.029 6.975  2.045  -2.273 1.225  O25  UB6 26 
UB6 N26  N5  N 0 1 N N N N N N -14.501 -16.956 6.088  2.260  -0.477 -0.022 N26  UB6 27 
UB6 C27  C19 C 0 1 Y N N N N N -13.275 -17.563 6.123  3.655  -0.549 0.083  C27  UB6 28 
UB6 N29  N6  N 0 1 Y N N N N N -11.626 -18.639 7.595  5.631  0.035  1.218  N29  UB6 29 
UB6 C30  C20 C 0 1 Y N N N N N -10.818 -18.902 6.551  6.362  -0.645 0.357  C30  UB6 30 
UB6 C31  C21 C 0 1 Y N N N N N -11.266 -18.516 5.269  5.773  -1.323 -0.695 C31  UB6 31 
UB6 C32  C22 C 0 1 Y N N N N N -12.461 -17.858 5.036  4.398  -1.272 -0.847 C32  UB6 32 
UB6 C33  C23 C 0 1 N N N N N N -12.917 -17.449 3.660  3.719  -1.998 -1.980 C33  UB6 33 
UB6 C34  C24 C 0 1 N N N N N N -9.522  -19.663 6.816  7.859  -0.685 0.522  C34  UB6 34 
UB6 C35  C25 C 0 1 N N N N N N -9.512  -21.180 6.396  8.405  0.743  0.573  C35  UB6 35 
UB6 C36  C26 C 0 1 N N N N N N -10.689 -22.003 6.970  7.878  1.446  1.826  C36  UB6 36 
UB6 C37  C27 C 0 1 N N N N N N -8.238  -21.927 6.692  9.934  0.704  0.614  C37  UB6 37 
UB6 H101 H1  H 0 0 N N N N N N -19.513 -11.307 7.746  -4.973 -1.951 1.369  H101 UB6 38 
UB6 H281 H2  H 0 0 N N N N N N -13.392 -17.802 8.243  3.753  0.668  1.841  H281 UB6 39 
UB6 H1   H3  H 0 1 N N N N N N -18.658 -12.680 14.054 -5.751 3.817  2.609  H1   UB6 40 
UB6 H2   H4  H 0 1 N N N N N N -19.141 -11.026 13.545 -4.091 3.379  2.138  H2   UB6 41 
UB6 H3   H5  H 0 1 N N N N N N -19.813 -12.459 12.696 -4.844 4.852  1.480  H3   UB6 42 
UB6 H021 H6  H 0 0 N N N N N N -17.561 -13.038 11.890 -6.507 3.464  0.273  H021 UB6 43 
UB6 H022 H7  H 0 0 N N N N N N -16.889 -11.605 12.739 -4.847 3.026  -0.198 H022 UB6 44 
UB6 H051 H8  H 0 0 N N N N N N -16.892 -12.327 9.743  -6.498 0.967  -0.741 H051 UB6 45 
UB6 H061 H9  H 0 0 N N N N N N -18.010 -9.723  8.830  -6.869 -0.702 1.639  H061 UB6 46 
UB6 H071 H10 H 0 0 N N N N N N -15.674 -11.451 7.903  -8.607 -1.290 0.197  H071 UB6 47 
UB6 H072 H11 H 0 0 N N N N N N -15.711 -9.692  8.265  -7.681 -0.823 -1.263 H072 UB6 48 
UB6 H081 H12 H 0 0 N N N N N N -16.178 -10.956 5.717  -7.433 -3.385 0.408  H081 UB6 49 
UB6 H082 H13 H 0 0 N N N N N N -16.385 -9.218  6.121  -7.585 -3.229 -1.371 H082 UB6 50 
UB6 H091 H14 H 0 0 N N N N N N -18.687 -9.441  6.447  -5.348 -2.359 -1.596 H091 UB6 51 
UB6 H092 H15 H 0 0 N N N N N N -18.479 -10.855 5.358  -5.135 -3.576 -0.298 H092 UB6 52 
UB6 H111 H16 H 0 0 N N N N N N -17.057 -12.853 7.140  -4.413 0.083  -0.675 H111 UB6 53 
UB6 H181 H17 H 0 0 N N N N N N -16.990 -20.406 4.433  2.151  3.267  -2.647 H181 UB6 54 
UB6 H191 H18 H 0 0 N N N N N N -14.825 -19.470 5.102  3.438  1.572  -1.415 H191 UB6 55 
UB6 H231 H19 H 0 0 N N N N N N -15.887 -14.042 6.957  -0.348 -2.100 1.012  H231 UB6 56 
UB6 H311 H20 H 0 0 N N N N N N -10.639 -18.748 4.420  6.380  -1.878 -1.395 H311 UB6 57 
UB6 H331 H21 H 0 0 N N N N N N -13.508 -18.261 3.213  3.459  -3.007 -1.661 H331 UB6 58 
UB6 H332 H22 H 0 0 N N N N N N -13.536 -16.543 3.733  2.813  -1.462 -2.264 H332 UB6 59 
UB6 H333 H23 H 0 0 N N N N N N -12.040 -17.244 3.029  4.393  -2.049 -2.835 H333 UB6 60 
UB6 H342 H24 H 0 0 N N N N N N -9.317  -19.612 7.895  8.109  -1.203 1.448  H342 UB6 61 
UB6 H341 H25 H 0 0 N N N N N N -8.716  -19.156 6.265  8.303  -1.214 -0.321 H341 UB6 62 
UB6 H351 H26 H 0 0 N N N N N N -9.636  -21.190 5.303  8.079  1.288  -0.313 H351 UB6 63 
UB6 H363 H27 H 0 0 N N N N N N -11.636 -21.480 6.768  8.267  2.464  1.862  H363 UB6 64 
UB6 H362 H28 H 0 0 N N N N N N -10.709 -22.995 6.494  6.789  1.474  1.796  H362 UB6 65 
UB6 H361 H29 H 0 0 N N N N N N -10.559 -22.120 8.056  8.204  0.901  2.712  H361 UB6 66 
UB6 H373 H30 H 0 0 N N N N N N -8.339  -22.971 6.360  10.309 0.204  -0.278 H373 UB6 67 
UB6 H371 H31 H 0 0 N N N N N N -7.402  -21.452 6.158  10.322 1.722  0.651  H371 UB6 68 
UB6 H372 H32 H 0 0 N N N N N N -8.042  -21.904 7.774  10.259 0.159  1.501  H372 UB6 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UB6 C33 C32  SING N N 1  
UB6 C18 N17  DOUB Y N 2  
UB6 C18 C19  SING Y N 3  
UB6 N17 C16  SING Y N 4  
UB6 C32 C31  DOUB Y N 5  
UB6 C32 C27  SING Y N 6  
UB6 C19 C20  DOUB Y N 7  
UB6 C31 C30  SING Y N 8  
UB6 C16 S15  SING Y N 9  
UB6 C16 C21  DOUB Y N 10 
UB6 S15 C14  SING Y N 11 
UB6 C20 C21  SING Y N 12 
UB6 C20 N26  SING N N 13 
UB6 C21 C22  SING Y N 14 
UB6 N26 C27  SING N N 15 
UB6 N26 C24  SING N N 16 
UB6 C27 C28  DOUB Y N 17 
UB6 C14 C22  DOUB Y N 18 
UB6 C14 C12  SING N N 19 
UB6 C22 N23  SING N N 20 
UB6 C09 C08  SING N N 21 
UB6 C09 C10  SING N N 22 
UB6 C08 C07  SING N N 23 
UB6 C35 C37  SING N N 24 
UB6 C35 C34  SING N N 25 
UB6 C35 C36  SING N N 26 
UB6 C30 C34  SING N N 27 
UB6 C30 N29  DOUB Y N 28 
UB6 C24 N23  SING N N 29 
UB6 C24 O25  DOUB N N 30 
UB6 O13 C12  DOUB N N 31 
UB6 C12 N11  SING N N 32 
UB6 N11 C10  SING N N 33 
UB6 C28 N29  SING Y N 34 
UB6 C10 C06  SING N N 35 
UB6 C07 C06  SING N N 36 
UB6 C06 N05  SING N N 37 
UB6 N05 C03  SING N N 38 
UB6 C03 O04  DOUB N N 39 
UB6 C03 C02  SING N N 40 
UB6 C02 C01  SING N N 41 
UB6 C10 H101 SING N N 42 
UB6 C28 H281 SING N N 43 
UB6 C01 H1   SING N N 44 
UB6 C01 H2   SING N N 45 
UB6 C01 H3   SING N N 46 
UB6 C02 H021 SING N N 47 
UB6 C02 H022 SING N N 48 
UB6 N05 H051 SING N N 49 
UB6 C06 H061 SING N N 50 
UB6 C07 H071 SING N N 51 
UB6 C07 H072 SING N N 52 
UB6 C08 H081 SING N N 53 
UB6 C08 H082 SING N N 54 
UB6 C09 H091 SING N N 55 
UB6 C09 H092 SING N N 56 
UB6 N11 H111 SING N N 57 
UB6 C18 H181 SING N N 58 
UB6 C19 H191 SING N N 59 
UB6 N23 H231 SING N N 60 
UB6 C31 H311 SING N N 61 
UB6 C33 H331 SING N N 62 
UB6 C33 H332 SING N N 63 
UB6 C33 H333 SING N N 64 
UB6 C34 H342 SING N N 65 
UB6 C34 H341 SING N N 66 
UB6 C35 H351 SING N N 67 
UB6 C36 H363 SING N N 68 
UB6 C36 H362 SING N N 69 
UB6 C36 H361 SING N N 70 
UB6 C37 H373 SING N N 71 
UB6 C37 H371 SING N N 72 
UB6 C37 H372 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UB6 SMILES           ACDLabs              12.01 "CCC(=O)NC1CCCC1NC(=O)c1sc2nccc3c2c1NC(=O)N3c1cnc(CC(C)C)cc1C"                                                                                                                                                            
UB6 InChI            InChI                1.06  "InChI=1S/C27H32N6O3S/c1-5-21(34)30-17-7-6-8-18(17)31-25(35)24-23-22-19(9-10-28-26(22)37-24)33(27(36)32-23)20-13-29-16(11-14(2)3)12-15(20)4/h9-10,12-14,17-18H,5-8,11H2,1-4H3,(H,30,34)(H,31,35)(H,32,36)/t17-,18+/m0/s1" 
UB6 InChIKey         InChI                1.06  KBWVWXCEDLZVBM-ZWKOTPCHSA-N                                                                                                                                                                                               
UB6 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N[C@H]1CCC[C@H]1NC(=O)c2sc3nccc4N(C(=O)Nc2c34)c5cnc(CC(C)C)cc5C"                                                                                                                                                  
UB6 SMILES           CACTVS               3.385 "CCC(=O)N[CH]1CCC[CH]1NC(=O)c2sc3nccc4N(C(=O)Nc2c34)c5cnc(CC(C)C)cc5C"                                                                                                                                                    
UB6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N[C@H]1CCC[C@H]1NC(=O)c2c3c4c(ccnc4s2)N(C(=O)N3)c5cnc(cc5C)CC(C)C"                                                                                                                                                
UB6 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)NC1CCCC1NC(=O)c2c3c4c(ccnc4s2)N(C(=O)N3)c5cnc(cc5C)CC(C)C"                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UB6 "SYSTEMATIC NAME" ACDLabs              12.01 "(5P)-5-[4-methyl-6-(2-methylpropyl)pyridin-3-yl]-4-oxo-N-[(1R,2S)-2-propanamidocyclopentyl]-4,5-dihydro-3H-1-thia-3,5,8-triazaacenaphthylene-2-carboxamide"                                            
UB6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[4-methyl-6-(2-methylpropyl)pyridin-3-yl]-6-oxidanylidene-~{N}-[(1~{R},2~{S})-2-(propanoylamino)cyclopentyl]-2-thia-5,7,11-triazatricyclo[6.3.1.0^{4,12}]dodeca-1(12),3,8,10-tetraene-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UB6 "Create component" 2022-08-16 RCSB 
UB6 "Initial release"  2022-11-16 RCSB 
UB6 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            UB6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
