data_0L7
# 
_chem_comp.id                                    0L7 
_chem_comp.name                                  "2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H24 N5 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-08 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.309 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0L7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DFP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0L7 O6    O6  O 0 1 N N N 19.074 -17.533 -3.355  7.187  0.595  -1.813 O6  DGX 1  
0L7 C6    C6  C 0 1 N N N 18.792 -18.548 -4.030  6.556  -0.436 -1.656 C6  DGX 2  
0L7 N1    N1  N 0 1 N N N 18.247 -19.634 -3.440  7.023  -1.614 -2.127 N1  DGX 3  
0L7 C2    C2  C 0 1 N N N 17.937 -20.738 -4.160  6.305  -2.758 -1.943 C2  DGX 4  
0L7 N2    N2  N 0 1 N N N 17.391 -21.813 -3.546  6.802  -3.941 -2.430 N2  DGX 5  
0L7 N3    N3  N 0 1 N N N 18.165 -20.787 -5.489  5.152  -2.765 -1.314 N3  DGX 6  
0L7 C5    C5  C 0 1 Y N N 19.022 -18.584 -5.401  5.321  -0.431 -0.975 C5  DGX 7  
0L7 C4    C4  C 0 1 Y N N 18.709 -19.726 -6.129  4.623  -1.635 -0.820 C4  DGX 8  
0L7 C7    C7  C 0 1 Y N N 19.553 -17.746 -6.355  4.501  0.606  -0.335 C7  DGX 9  
0L7 C32   C32 C 0 1 N N N 19.997 -16.502 -6.160  4.799  2.004  -0.248 C32 DGX 10 
0L7 C33   C33 C 0 1 N N N 20.393 -15.403 -5.987  5.043  3.150  -0.176 C33 DGX 11 
0L7 C34   C34 C 0 1 N N N 20.847 -14.010 -5.836  5.350  4.587  -0.087 C34 DGX 12 
0L7 C35   C35 C 0 1 N N N 20.363 -13.384 -4.527  4.225  5.303  0.663  C35 DGX 13 
0L7 C36   C36 C 0 1 N N N 21.076 -13.981 -3.319  4.544  6.797  0.756  C36 DGX 14 
0L7 N37   N37 N 0 1 N N N 20.416 -15.206 -2.911  3.464  7.484  1.476  N37 DGX 15 
0L7 C8    C8  C 0 1 Y N N 19.546 -18.309 -7.608  3.402  -0.024 0.157  C8  DGX 16 
0L7 N9    N9  N 0 1 Y N N 19.038 -19.540 -7.422  3.471  -1.358 -0.140 N9  DGX 17 
0L7 "C1'" C1* C 0 1 N N R 18.812 -20.532 -8.498  2.461  -2.351 0.232  C1* DGX 18 
0L7 "C2'" C2* C 0 1 N N N 17.393 -20.287 -8.980  2.859  -3.033 1.556  C2* DGX 19 
0L7 "C3'" C3* C 0 1 N N S 17.563 -19.604 -10.320 1.671  -2.744 2.504  C3* DGX 20 
0L7 "O3'" O3* O 0 1 N N N 16.523 -20.007 -11.213 1.355  -3.894 3.292  O3* DGX 21 
0L7 "O4'" O4* O 0 1 N N N 19.693 -20.282 -9.595  1.195  -1.704 0.445  O4* DGX 22 
0L7 "C4'" C4* C 0 1 N N R 18.932 -20.073 -10.788 0.528  -2.426 1.506  C4* DGX 23 
0L7 "C5'" C5* C 0 1 N N N 19.622 -19.045 -11.675 -0.537 -1.550 2.167  C5* DGX 24 
0L7 "O5'" O5* O 0 1 N N N 19.881 -17.879 -10.901 -1.632 -1.369 1.266  O5* DGX 25 
0L7 PA    PA  P 0 1 N N N 19.615 -16.415 -11.506 -2.935 -0.498 1.634  PA  DGX 26 
0L7 O1A   O1A O 0 1 N N N 20.378 -15.416 -10.670 -3.728 -1.204 2.844  O1A DGX 27 
0L7 O2A   O2A O 0 1 N N N 19.754 -16.399 -13.011 -2.520 0.863  2.042  O2A DGX 28 
0L7 O3A   O3A O 0 1 N N N 18.067 -16.272 -11.102 -3.897 -0.402 0.346  O3A DGX 29 
0L7 PB    PB  P 0 1 N N N 16.891 -16.371 -12.193 -5.082 0.595  -0.093 PB  DGX 30 
0L7 O1B   O1B O 0 1 N N N 17.403 -17.073 -13.430 -5.915 0.920  1.086  O1B DGX 31 
0L7 O2B   O2B O 0 1 N N N 15.689 -16.934 -11.468 -4.450 1.949  -0.693 O2B DGX 32 
0L7 O3B   O3B O 0 1 N N N 16.646 -14.801 -12.463 -5.993 -0.115 -1.214 O3B DGX 33 
0L7 PG    PG  P 0 1 N N N 16.974 -14.090 -13.871 -7.451 0.188  -1.827 PG  DGX 34 
0L7 O3G   O3G O 0 1 N N N 15.667 -14.149 -14.621 -8.364 0.611  -0.741 O3G DGX 35 
0L7 O2G   O2G O 0 1 N N N 17.395 -12.700 -13.454 -7.340 1.361  -2.923 O2G DGX 36 
0L7 O1G   O1G O 0 1 N N N 18.093 -14.914 -14.469 -8.028 -1.145 -2.523 O1G DGX 37 
0L7 H1    H1  H 0 1 N N N 18.070 -19.622 -2.456  7.872  -1.646 -2.596 H1  DGX 38 
0L7 H2    H2  H 0 1 N N N 17.162 -22.629 -4.077  7.653  -3.953 -2.897 H2  DGX 39 
0L7 H3    H3  H 0 1 N N N 17.216 -21.791 -2.562  6.304  -4.764 -2.308 H3  DGX 40 
0L7 H4    H4  H 0 1 N N N 21.947 -13.992 -5.852  6.289  4.726  0.449  H4  DGX 41 
0L7 H5    H5  H 0 1 N N N 20.458 -13.417 -6.677  5.440  5.003  -1.091 H5  DGX 42 
0L7 H6    H6  H 0 1 N N N 20.557 -12.302 -4.556  3.286  5.165  0.127  H6  DGX 43 
0L7 H7    H7  H 0 1 N N N 19.282 -13.560 -4.426  4.136  4.887  1.667  H7  DGX 44 
0L7 H8    H8  H 0 1 N N N 22.121 -14.201 -3.584  5.483  6.935  1.292  H8  DGX 45 
0L7 H9    H9  H 0 1 N N N 21.052 -13.260 -2.489  4.633  7.212  -0.248 H9  DGX 46 
0L7 H10   H10 H 0 1 N N N 20.889 -15.592 -2.119  3.318  7.074  2.386  H10 DGX 47 
0L7 H11   H11 H 0 1 N N N 19.466 -15.008 -2.669  3.651  8.472  1.551  H11 DGX 48 
0L7 H13   H13 H 0 1 N N N 19.875 -17.863 -8.535  2.594  0.455  0.689  H13 DGX 49 
0L7 H14   H14 H 0 1 N N N 18.916 -21.558 -8.116  2.367  -3.098 -0.556 H14 DGX 50 
0L7 H15   H15 H 0 1 N N N 16.850 -19.637 -8.278  2.980  -4.106 1.411  H15 DGX 51 
0L7 H16   H16 H 0 1 N N N 16.851 -21.237 -9.094  3.778  -2.596 1.948  H16 DGX 52 
0L7 H17   H17 H 0 1 N N N 17.569 -18.512 -10.186 1.881  -1.885 3.141  H17 DGX 53 
0L7 H18   H18 H 0 1 N N N 15.687 -19.696 -10.887 2.075  -4.186 3.868  H18 DGX 54 
0L7 H19   H19 H 0 1 N N N 18.822 -21.015 -11.345 0.087  -3.346 1.122  H19 DGX 55 
0L7 H20   H20 H 0 1 N N N 18.970 -18.790 -12.523 -0.892 -2.034 3.077  H20 DGX 56 
0L7 H21   H21 H 0 1 N N N 20.569 -19.457 -12.052 -0.107 -0.580 2.416  H21 DGX 57 
0L7 H22   H22 H 0 1 N N N 20.893 -14.855 -11.238 -4.030 -2.101 2.646  H22 DGX 58 
0L7 H23   H23 H 0 1 N N N 15.386 -17.715 -11.915 -3.891 1.811  -1.470 H23 DGX 59 
0L7 H24   H24 H 0 1 N N N 16.744 -12.071 -13.743 -6.757 1.152  -3.665 H24 DGX 60 
0L7 H25   H25 H 0 1 N N N 18.010 -15.816 -14.183 -8.905 -1.036 -2.914 H25 DGX 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0L7 O3G   PG    DOUB N N 1  
0L7 O1G   PG    SING N N 2  
0L7 PG    O2G   SING N N 3  
0L7 PG    O3B   SING N N 4  
0L7 O1B   PB    DOUB N N 5  
0L7 O2A   PA    DOUB N N 6  
0L7 O3B   PB    SING N N 7  
0L7 PB    O2B   SING N N 8  
0L7 PB    O3A   SING N N 9  
0L7 "C5'" "O5'" SING N N 10 
0L7 "C5'" "C4'" SING N N 11 
0L7 PA    O3A   SING N N 12 
0L7 PA    "O5'" SING N N 13 
0L7 PA    O1A   SING N N 14 
0L7 "O3'" "C3'" SING N N 15 
0L7 "C4'" "C3'" SING N N 16 
0L7 "C4'" "O4'" SING N N 17 
0L7 "C3'" "C2'" SING N N 18 
0L7 "O4'" "C1'" SING N N 19 
0L7 "C2'" "C1'" SING N N 20 
0L7 "C1'" N9    SING N N 21 
0L7 C8    N9    SING Y N 22 
0L7 C8    C7    DOUB Y N 23 
0L7 N9    C4    SING Y N 24 
0L7 C7    C32   SING N N 25 
0L7 C7    C5    SING Y N 26 
0L7 C32   C33   TRIP N N 27 
0L7 C4    N3    SING N N 28 
0L7 C4    C5    DOUB Y N 29 
0L7 C33   C34   SING N N 30 
0L7 C34   C35   SING N N 31 
0L7 N3    C2    DOUB N N 32 
0L7 C5    C6    SING N N 33 
0L7 C35   C36   SING N N 34 
0L7 C2    N2    SING N N 35 
0L7 C2    N1    SING N N 36 
0L7 C6    N1    SING N N 37 
0L7 C6    O6    DOUB N N 38 
0L7 C36   N37   SING N N 39 
0L7 N1    H1    SING N N 40 
0L7 N2    H2    SING N N 41 
0L7 N2    H3    SING N N 42 
0L7 C34   H4    SING N N 43 
0L7 C34   H5    SING N N 44 
0L7 C35   H6    SING N N 45 
0L7 C35   H7    SING N N 46 
0L7 C36   H8    SING N N 47 
0L7 C36   H9    SING N N 48 
0L7 N37   H10   SING N N 49 
0L7 N37   H11   SING N N 50 
0L7 C8    H13   SING N N 51 
0L7 "C1'" H14   SING N N 52 
0L7 "C2'" H15   SING N N 53 
0L7 "C2'" H16   SING N N 54 
0L7 "C3'" H17   SING N N 55 
0L7 "O3'" H18   SING N N 56 
0L7 "C4'" H19   SING N N 57 
0L7 "C5'" H20   SING N N 58 
0L7 "C5'" H21   SING N N 59 
0L7 O1A   H22   SING N N 60 
0L7 O2B   H23   SING N N 61 
0L7 O2G   H24   SING N N 62 
0L7 O1G   H25   SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0L7 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2c1N=C(N)NC(=O)c1c(C#CCCCN)c2)CC3O" 
0L7 InChI            InChI                1.03  
"InChI=1S/C16H24N5O13P3/c17-5-3-1-2-4-9-7-21(14-13(9)15(23)20-16(18)19-14)12-6-10(22)11(32-12)8-31-36(27,28)34-37(29,30)33-35(24,25)26/h7,10-12,22H,1,3,5-6,8,17H2,(H,27,28)(H,29,30)(H2,24,25,26)(H3,18,19,20,23)/t10-,11+,12+/m0/s1" 
0L7 InChIKey         InChI                1.03  XIWGGMXHUSVMFH-QJPTWQEYSA-N 
0L7 SMILES_CANONICAL CACTVS               3.370 "NCCCC#Cc1cn([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13" 
0L7 SMILES           CACTVS               3.370 "NCCCC#Cc1cn([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13" 
0L7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN" 
0L7 SMILES           "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0L7 "SYSTEMATIC NAME" ACDLabs              12.01 "2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" 
0L7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[2-azanyl-5-(5-azanylpent-1-ynyl)-4-oxidanylidene-3H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0L7 "Create component" 2012-02-08 RCSB 
# 
