data_6B7
# 
_chem_comp.id                                    6B7 
_chem_comp.name                                  "(2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.411 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6B7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DZJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6B7 C10 C1  C 0 1 N N N N N N -3.125 8.505 131.869 1.619  2.171  1.183  C10 6B7 1  
6B7 CD  C2  C 0 1 N N N N N N -2.169 6.194 132.002 2.819  0.072  0.559  CD  6B7 2  
6B7 C12 C3  C 0 1 N N S N N N -1.080 6.973 132.806 4.056  0.715  -0.014 C12 6B7 3  
6B7 N   N1  N 0 1 N N N N N N -1.670 5.664 130.708 2.406  -1.092 0.251  N   6B7 4  
6B7 C13 C4  C 0 1 N N N N N N 0.313  6.768 132.228 3.664  1.922  -0.827 C13 6B7 5  
6B7 C14 C5  C 0 1 N N R N N N -1.100 7.023 134.362 4.784  -0.289 -0.910 C14 6B7 6  
6B7 C15 C6  C 0 1 N N N N N N -1.432 5.748 135.142 5.182  -1.514 -0.085 C15 6B7 7  
6B7 S1  S1  S 0 1 N N N N N N -4.508 8.154 129.274 -0.592 0.596  0.381  S1  6B7 8  
6B7 C1  C7  C 0 1 N N N N N N -6.683 8.304 127.648 -3.284 0.378  0.080  C1  6B7 9  
6B7 O1  O1  O 0 1 N N N N N N -6.731 9.462 128.033 -3.077 1.268  -0.710 O1  6B7 10 
6B7 O2  O2  O 0 1 N N N N N N -7.562 7.718 126.767 -4.533 -0.075 0.269  O2  6B7 11 
6B7 C2  C8  C 0 1 N N N N N N -7.443 6.297 126.564 -5.586 0.551  -0.511 C2  6B7 12 
6B7 O   O3  O 0 1 N N N N N N -1.968 6.511 127.498 0.246  -1.833 -1.166 O   6B7 13 
6B7 C3  C9  C 0 1 N N N N N N -6.841 6.026 125.192 -6.929 -0.093 -0.163 C3  6B7 14 
6B7 OXT O4  O 0 1 N N N N N N -0.669 7.737 128.922 -0.746 -2.929 0.477  OXT 6B7 15 
6B7 C4  C10 C 0 1 N N N N N N -6.305 7.283 124.512 -8.039 0.566  -0.985 C4  6B7 16 
6B7 O5  O5  O 0 1 N N N N N N 0.753  7.489 131.347 4.081  3.014  -0.525 O5  6B7 17 
6B7 C5  C11 C 0 1 N N N N N N -5.610 7.325 128.073 -2.139 -0.223 0.855  C5  6B7 18 
6B7 O6  O6  O 0 1 N N N N N N 0.225  7.437 134.691 3.920  -0.691 -1.975 O6  6B7 19 
6B7 CB  C12 C 0 1 N N R N N N -3.712 6.777 130.216 0.620  -0.130 1.519  CB  6B7 20 
6B7 CA  C13 C 0 1 N N R N N N -2.331 6.344 129.810 1.179  -1.461 0.965  CA  6B7 21 
6B7 C   C14 C 0 1 N N N N N N -1.583 6.913 128.631 0.192  -2.088 0.014  C   6B7 22 
6B7 CG  C15 C 0 1 N N R N N N -3.422 7.015 131.682 1.912  0.723  1.579  CG  6B7 23 
6B7 H1  H1  H 0 1 N N N N N N -2.910 8.706 132.929 0.885  2.594  1.868  H1  6B7 24 
6B7 H2  H2  H 0 1 N N N N N N -2.253 8.784 131.259 2.539  2.755  1.231  H2  6B7 25 
6B7 H3  H3  H 0 1 N N N N N N -3.998 9.095 131.553 1.225  2.197  0.167  H3  6B7 26 
6B7 H5  H5  H 0 1 N N N N N N -1.297 8.017 132.537 4.715  1.022  0.798  H5  6B7 27 
6B7 H8  H8  H 0 1 N N N N N N 0.927  5.965 132.607 3.009  1.810  -1.678 H8  6B7 28 
6B7 H9  H9  H 0 1 N N N N N N -1.814 7.804 134.664 5.679  0.177  -1.324 H9  6B7 29 
6B7 H10 H10 H 0 1 N N N N N N -1.402 5.959 136.221 4.288  -1.979 0.329  H10 6B7 30 
6B7 H11 H11 H 0 1 N N N N N N -2.438 5.400 134.864 5.701  -2.229 -0.724 H11 6B7 31 
6B7 H12 H12 H 0 1 N N N N N N -0.695 4.968 134.901 5.841  -1.207 0.727  H12 6B7 32 
6B7 H13 H13 H 0 1 N N N N N N -8.439 5.834 126.625 -5.623 1.616  -0.282 H13 6B7 33 
6B7 H14 H14 H 0 1 N N N N N N -6.792 5.869 127.341 -5.381 0.414  -1.573 H14 6B7 34 
6B7 H15 H15 H 0 1 N N N N N N -7.618 5.585 124.550 -6.892 -1.158 -0.392 H15 6B7 35 
6B7 H16 H16 H 0 1 N N N N N N -6.013 5.311 125.308 -7.134 0.043  0.899  H16 6B7 36 
6B7 H17 H17 H 0 1 N N N N N N -0.262 8.054 128.124 -1.356 -3.306 -0.171 H17 6B7 37 
6B7 H18 H18 H 0 1 N N N N N N -5.886 7.019 123.530 -8.996 0.108  -0.737 H18 6B7 38 
6B7 H19 H19 H 0 1 N N N N N N -7.124 8.005 124.379 -8.076 1.631  -0.756 H19 6B7 39 
6B7 H20 H20 H 0 1 N N N N N N -5.519 7.731 125.137 -7.835 0.430  -2.047 H20 6B7 40 
6B7 H21 H21 H 0 1 N N N N N N -6.075 6.446 128.542 -2.069 -1.288 0.631  H21 6B7 41 
6B7 H22 H22 H 0 1 N N N N N N -5.029 7.007 127.195 -2.311 -0.087 1.922  H22 6B7 42 
6B7 H23 H23 H 0 1 N N N N N N 0.313  7.498 135.635 4.317  -1.329 -2.584 H23 6B7 43 
6B7 H24 H24 H 0 1 N N N N N N -4.399 5.923 130.122 0.191  -0.265 2.512  H24 6B7 44 
6B7 H25 H25 H 0 1 N N N N N N -2.682 5.457 129.262 1.405  -2.146 1.783  H25 6B7 45 
6B7 H26 H26 H 0 1 N N N N N N -4.268 6.701 132.311 2.352  0.682  2.576  H26 6B7 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6B7 C4  C3  SING N N 1  
6B7 C3  C2  SING N N 2  
6B7 C2  O2  SING N N 3  
6B7 O2  C1  SING N N 4  
6B7 O   C   DOUB N N 5  
6B7 C1  O1  DOUB N N 6  
6B7 C1  C5  SING N N 7  
6B7 C5  S1  SING N N 8  
6B7 C   OXT SING N N 9  
6B7 C   CA  SING N N 10 
6B7 S1  CB  SING N N 11 
6B7 CA  CB  SING N N 12 
6B7 CA  N   SING N N 13 
6B7 CB  CG  SING N N 14 
6B7 N   CD  DOUB N N 15 
6B7 O5  C13 DOUB N N 16 
6B7 CG  C10 SING N N 17 
6B7 CG  CD  SING N N 18 
6B7 CD  C12 SING N N 19 
6B7 C13 C12 SING N N 20 
6B7 C12 C14 SING N N 21 
6B7 C14 O6  SING N N 22 
6B7 C14 C15 SING N N 23 
6B7 C10 H1  SING N N 24 
6B7 C10 H2  SING N N 25 
6B7 C10 H3  SING N N 26 
6B7 C12 H5  SING N N 27 
6B7 C13 H8  SING N N 28 
6B7 C14 H9  SING N N 29 
6B7 C15 H10 SING N N 30 
6B7 C15 H11 SING N N 31 
6B7 C15 H12 SING N N 32 
6B7 C2  H13 SING N N 33 
6B7 C2  H14 SING N N 34 
6B7 C3  H15 SING N N 35 
6B7 C3  H16 SING N N 36 
6B7 OXT H17 SING N N 37 
6B7 C4  H18 SING N N 38 
6B7 C4  H19 SING N N 39 
6B7 C4  H20 SING N N 40 
6B7 C5  H21 SING N N 41 
6B7 C5  H22 SING N N 42 
6B7 O6  H23 SING N N 43 
6B7 CB  H24 SING N N 44 
6B7 CA  H25 SING N N 45 
6B7 CG  H26 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6B7 InChI            InChI                1.03  "InChI=1S/C15H23NO6S/c1-4-5-22-11(19)7-23-14-8(2)12(10(6-17)9(3)18)16-13(14)15(20)21/h6,8-10,13-14,18H,4-5,7H2,1-3H3,(H,20,21)/t8-,9-,10-,13+,14-/m1/s1" 
6B7 InChIKey         InChI                1.03  ZOZKWSICEOZYLE-FDACTJFASA-N                                                                                                                              
6B7 SMILES_CANONICAL CACTVS               3.385 "CCCOC(=O)CS[C@@H]1[C@H](C)C(=N[C@@H]1C(O)=O)[C@H](C=O)[C@@H](C)O"                                                                                       
6B7 SMILES           CACTVS               3.385 "CCCOC(=O)CS[CH]1[CH](C)C(=N[CH]1C(O)=O)[CH](C=O)[CH](C)O"                                                                                               
6B7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCOC(=O)CS[C@@H]1[C@@H](C(=N[C@@H]1C(=O)O)[C@H](C=O)[C@@H](C)O)C"                                                                                      
6B7 SMILES           "OpenEye OEToolkits" 2.0.5 "CCCOC(=O)CSC1C(C(=NC1C(=O)O)C(C=O)C(C)O)C"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           6B7 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6B7 "Create component"   2016-03-01 RCSB 
6B7 "Other modification" 2016-05-23 RCSB 
6B7 "Other modification" 2016-06-02 RCSB 
6B7 "Initial release"    2016-10-05 RCSB 
6B7 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6B7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
