data_6C7
#

_chem_comp.id                                   6C7
_chem_comp.name                                 "S-(3-methylbut-2-en-1-yl) trihydrogen thiodiphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H12 O6 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "DMASPP; DMAPP; DMADP; Dimethylallyl pyrophosphate; dimethylallyl diphosphate;  isoprenyl pyrophosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-03-09
_chem_comp.pdbx_modified_date                   2020-07-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       262.158
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6C7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5INJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6C7  O4    O1   O  0  1  N  N  N  -25.381  13.148   5.303   3.208   1.877  -0.170  O4    6C7   1  
6C7  P1    P1   P  0  1  N  N  N  -26.777  12.570   5.319   3.166   0.268  -0.188  P1    6C7   2  
6C7  O6    O2   O  0  1  N  N  N  -26.750  11.009   5.407   4.173  -0.282  -1.317  O6    6C7   3  
6C7  O5    O3   O  0  1  N  N  N  -27.743  13.090   4.236   3.579  -0.251   1.136  O5    6C7   4  
6C7  O2    O4   O  0  1  N  N  N  -27.507  12.995   6.706   1.670  -0.227  -0.516  O2    6C7   5  
6C7  P3    P2   P  0  1  N  N  N  -27.986  14.443   7.209   0.302  -0.292   0.331  P3    6C7   6  
6C7  O8    O5   O  0  1  N  N  N  -26.845  15.359   7.215   0.515  -1.229   1.623  O8    6C7   7  
6C7  O7    O6   O  0  1  N  N  N  -29.208  14.902   6.386  -0.073   1.072   0.767  O7    6C7   8  
6C7  S9    S1   S  0  1  N  N  N  -28.471  14.002   9.149  -1.241  -1.097  -0.879  S9    6C7   9  
6C7  C10   C1   C  0  1  N  N  N  -28.556  15.692   9.856  -2.676  -1.090   0.231  C10   6C7  10  
6C7  C11   C2   C  0  1  N  N  N  -29.923  15.888  10.492  -3.190   0.319   0.379  C11   6C7  11  
6C7  C12   C3   C  0  1  N  N  N  -30.623  17.000  10.541  -4.394   0.624  -0.036  C12   6C7  12  
6C7  C13   C4   C  0  1  N  N  N  -31.963  17.062  11.205  -5.329  -0.463  -0.500  C13   6C7  13  
6C7  C14   C5   C  0  1  N  N  N  -30.179  18.244   9.833  -4.845   2.062  -0.050  C14   6C7  14  
6C7  H1    H1   H  0  1  N  N  N  -25.306  13.775   4.593   2.949   2.287  -1.007  H1    6C7  15  
6C7  H2    H2   H  0  1  N  N  N  -27.347  10.645   4.764   5.095  -0.022  -1.183  H2    6C7  16  
6C7  H3    H3   H  0  1  N  N  N  -27.049  16.123   6.688   0.763  -2.139   1.412  H3    6C7  17  
6C7  H102  H4   H  0  0  N  N  N  -27.772  15.814  10.618  -3.461  -1.721  -0.186  H102  6C7  18  
6C7  H101  H5   H  0  0  N  N  N  -28.410  16.435   9.058  -2.381  -1.473   1.208  H101  6C7  19  
6C7  H111  H6   H  0  0  N  N  N  -30.368  15.019  10.954  -2.565   1.078   0.827  H111  6C7  20  
6C7  H131  H7   H  0  0  N  N  N  -32.179  16.097  11.688  -4.871  -1.436  -0.323  H131  6C7  21  
6C7  H133  H8   H  0  0  N  N  N  -31.960  17.859  11.963  -6.266  -0.397   0.054  H133  6C7  22  
6C7  H132  H9   H  0  0  N  N  N  -32.736  17.276  10.452  -5.527  -0.342  -1.565  H132  6C7  23  
6C7  H143  H10  H  0  0  N  N  N  -30.910  19.047  10.008  -4.597   2.511  -1.012  H143  6C7  24  
6C7  H141  H11  H  0  0  N  N  N  -29.196  18.553  10.217  -5.923   2.107   0.105  H141  6C7  25  
6C7  H142  H12  H  0  0  N  N  N  -30.105  18.045   8.754  -4.340   2.609   0.746  H142  6C7  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6C7  O5   P1    DOUB  N  N   1  
6C7  O4   P1    SING  N  N   2  
6C7  P1   O6    SING  N  N   3  
6C7  P1   O2    SING  N  N   4  
6C7  O7   P3    DOUB  N  N   5  
6C7  O2   P3    SING  N  N   6  
6C7  P3   O8    SING  N  N   7  
6C7  P3   S9    SING  N  N   8  
6C7  S9   C10   SING  N  N   9  
6C7  C14  C12   SING  N  N  10  
6C7  C10  C11   SING  N  N  11  
6C7  C11  C12   DOUB  N  N  12  
6C7  C12  C13   SING  N  N  13  
6C7  O4   H1    SING  N  N  14  
6C7  O6   H2    SING  N  N  15  
6C7  O8   H3    SING  N  N  16  
6C7  C10  H102  SING  N  N  17  
6C7  C10  H101  SING  N  N  18  
6C7  C11  H111  SING  N  N  19  
6C7  C13  H131  SING  N  N  20  
6C7  C13  H133  SING  N  N  21  
6C7  C13  H132  SING  N  N  22  
6C7  C14  H143  SING  N  N  23  
6C7  C14  H141  SING  N  N  24  
6C7  C14  H142  SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6C7  SMILES            ACDLabs               12.01  "OP(O)(OP(O)(SC\C=C(\C)C)=O)=O"  
6C7  InChI             InChI                 1.03   "InChI=1S/C5H12O6P2S/c1-5(2)3-4-14-13(9,10)11-12(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"  
6C7  InChIKey          InChI                 1.03   ZWFWSISPSBLNGO-UHFFFAOYSA-N  
6C7  SMILES_CANONICAL  CACTVS                3.385  "CC(C)=CCS[P](O)(=O)O[P](O)(O)=O"  
6C7  SMILES            CACTVS                3.385  "CC(C)=CCS[P](O)(=O)O[P](O)(O)=O"  
6C7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CC(=CCSP(=O)(O)OP(=O)(O)O)C"  
6C7  SMILES            "OpenEye OEToolkits"  2.0.4  "CC(=CCSP(=O)(O)OP(=O)(O)O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6C7  "SYSTEMATIC NAME"  ACDLabs               12.01  "S-(3-methylbut-2-en-1-yl) trihydrogen thiodiphosphate"  
6C7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "3-methylbut-2-enylsulfanyl(phosphonooxy)phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6C7  "Create component"  2016-03-09  RCSB  
6C7  "Initial release"   2016-05-11  RCSB  
6C7  "Modify synonyms"   2020-07-15  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6C7  DMASPP                         ?  ?  
2  6C7  DMAPP                          ?  ?  
3  6C7  DMADP                          ?  ?  
4  6C7  "dimethylallyl pyrophosphate"  ?  ?  
5  6C7  "dimethylallyl diphosphate"    ?  ?  
6  6C7  "isoprenyl pyrophosphate"      ?  ?  
##
