data_6L7
# 
_chem_comp.id                                    6L7 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azaniumylethyl)-[(3~{S})-3-azaniumyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H29 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    3 
_chem_comp.pdbx_initial_date                     2016-04-28 
_chem_comp.pdbx_modified_date                    2018-05-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.452 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6L7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NTC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6L7 C1   C1  C 0 1 Y N N 50.354 40.086 128.288 3.830  -0.654 0.013  C1   6L7 1  
6L7 C2   C2  C 0 1 Y N N 50.759 39.983 126.967 4.430  -0.723 -1.256 C2   6L7 2  
6L7 C3   C3  C 0 1 Y N N 51.034 41.193 126.295 5.727  -1.254 -1.349 C3   6L7 3  
6L7 C4   C4  C 0 1 Y N N 50.487 42.281 128.262 5.720  -1.579 0.937  C4   6L7 4  
6L7 C5   C5  C 0 1 Y N N 50.473 37.996 127.643 2.458  0.142  -1.520 C5   6L7 5  
6L7 C6   C6  C 0 1 N N R 49.828 38.366 130.064 1.588  0.172  0.849  C6   6L7 6  
6L7 C7   C7  C 0 1 N N R 48.753 37.284 130.142 1.849  1.551  1.505  C7   6L7 7  
6L7 N1   N1  N 0 1 Y N N 50.830 38.661 126.567 3.540  -0.221 -2.146 N1   6L7 8  
6L7 N2   N2  N 0 1 Y N N 50.175 38.791 128.713 2.588  -0.105 -0.185 N2   6L7 9  
6L7 N3   N3  N 0 1 Y N N 50.886 42.343 126.988 6.324  -1.664 -0.234 N3   6L7 10 
6L7 C8   C8  C 0 1 N N S 49.133 36.566 131.441 0.444  1.931  2.033  C8   6L7 11 
6L7 N4   N4  N 0 1 Y N N 50.197 41.203 128.998 4.507  -1.086 1.071  N4   6L7 12 
6L7 N5   N5  N 0 1 N N N 51.444 41.257 125.024 6.369  -1.347 -2.571 N5   6L7 13 
6L7 C9   C9  C 0 1 N N R 50.653 36.722 131.500 -0.520 1.066  1.197  C9   6L7 14 
6L7 C10  C10 C 0 1 N N N 51.379 35.504 130.987 -1.505 1.964  0.447  C10  6L7 15 
6L7 O1   O1  O 0 1 N N N 50.995 37.812 130.625 0.278  0.322  0.261  O1   6L7 16 
6L7 O2   O2  O 0 1 N N N 48.524 37.135 132.593 0.328  1.609  3.421  O2   6L7 17 
6L7 O3   O3  O 0 1 N N N 47.467 37.881 130.254 2.784  1.436  2.580  O3   6L7 18 
6L7 N6   N6  N 1 1 N N N 52.146 34.683 131.976 -2.421 1.132  -0.345 N6   6L7 19 
6L7 C11  C11 C 0 1 N N N 52.244 33.211 131.659 -3.274 1.995  -1.174 C11  6L7 20 
6L7 C12  C12 C 0 1 N N N 51.079 32.473 131.029 -2.412 2.718  -2.211 C12  6L7 21 
6L7 N7   N7  N 1 1 N N N 51.564 31.155 130.550 -3.278 3.481  -3.120 N7   6L7 22 
6L7 C13  C13 C 0 1 N N N 51.923 34.928 133.445 -3.262 0.335  0.558  C13  6L7 23 
6L7 C14  C14 C 0 1 N N N 53.193 34.724 134.240 -4.128 -0.622 -0.263 C14  6L7 24 
6L7 C15  C15 C 0 1 N N S 53.279 35.546 135.526 -5.004 -1.452 0.677  C15  6L7 25 
6L7 C16  C16 C 0 1 N N N 53.834 34.637 136.624 -5.944 -2.306 -0.135 C16  6L7 26 
6L7 O4   O4  O 0 1 N N N 53.031 34.220 137.488 -7.062 -1.771 -0.649 O4   6L7 27 
6L7 O5   O5  O 0 1 N N N 55.048 34.343 136.546 -5.690 -3.473 -0.322 O5   6L7 28 
6L7 N8   N8  N 1 1 N N N 54.184 36.714 135.337 -4.152 -2.315 1.506  N8   6L7 29 
6L7 HC4  H1  H 0 1 N N N 50.385 43.231 128.766 6.243  -1.921 1.817  HC4  6L7 30 
6L7 HC5  H2  H 0 1 N N N 50.420 36.918 127.678 1.587  0.576  -1.988 HC5  6L7 31 
6L7 HC6  H3  H 0 1 N N N 49.497 39.235 130.651 1.584  -0.617 1.601  HC6  6L7 32 
6L7 HC7  H4  H 0 1 N N N 48.824 36.600 129.284 2.196  2.274  0.767  HC7  6L7 33 
6L7 HC8  H5  H 0 1 N N N 48.881 35.499 131.353 0.248  2.990  1.869  HC8  6L7 34 
6L7 HN5A H6  H 0 0 N N N 51.587 42.213 124.767 5.922  -1.044 -3.378 HN5A 6L7 35 
6L7 HN5B H7  H 0 0 N N N 52.302 40.753 124.925 7.265  -1.715 -2.622 HN5B 6L7 36 
6L7 HC9  H8  H 0 1 N N N 50.963 36.936 132.534 -1.064 0.382  1.848  HC9  6L7 37 
6L7 H10B H9  H 0 0 N N N 50.629 34.845 130.524 -2.077 2.554  1.163  H10B 6L7 38 
6L7 H10A H10 H 0 0 N N N 52.091 35.844 130.220 -0.956 2.632  -0.217 H10A 6L7 39 
6L7 HO2  H11 H 0 1 N N N 48.794 36.652 133.365 0.952  2.082  3.988  HO2  6L7 40 
6L7 HO3  H12 H 0 1 N N N 46.805 37.201 130.302 2.980  2.273  3.023  HO3  6L7 41 
6L7 HN6  H13 H 0 1 N N N 53.086 34.998 131.842 -1.887 0.516  -0.939 HN6  6L7 42 
6L7 H11B H14 H 0 0 N N N 52.463 32.700 132.608 -4.020 1.385  -1.683 H11B 6L7 43 
6L7 H11A H15 H 0 0 N N N 53.097 33.094 130.974 -3.774 2.728  -0.541 H11A 6L7 44 
6L7 H12B H16 H 0 0 N N N 50.685 33.054 130.182 -1.729 3.399  -1.703 H12B 6L7 45 
6L7 H12A H17 H 0 0 N N N 50.284 32.328 131.775 -1.840 1.987  -2.781 H12A 6L7 46 
6L7 HN7C H18 H 0 0 N N N 50.807 30.653 130.131 -3.910 2.851  -3.589 HN7C 6L7 47 
6L7 HN7B H19 H 0 0 N N N 52.288 31.292 129.874 -3.807 4.158  -2.592 HN7B 6L7 48 
6L7 HN7A H20 H 0 0 N N N 51.924 30.631 131.322 -2.709 3.958  -3.804 HN7A 6L7 49 
6L7 H13B H21 H 0 0 N N N 51.575 35.962 133.586 -2.628 -0.239 1.234  H13B 6L7 50 
6L7 H13A H22 H 0 0 N N N 51.156 34.230 133.811 -3.904 0.999  1.138  H13A 6L7 51 
6L7 H14A H23 H 0 0 N N N 53.262 33.659 134.508 -4.763 -0.048 -0.939 H14A 6L7 52 
6L7 H14B H24 H 0 0 N N N 54.045 34.997 133.601 -3.487 -1.286 -0.843 H14B 6L7 53 
6L7 HC15 H25 H 0 0 N N N 52.273 35.891 135.809 -5.581 -0.786 1.319  HC15 6L7 54 
6L7 H1   H26 H 0 1 N N N 53.484 33.638 138.087 -7.634 -2.358 -1.163 H1   6L7 55 
6L7 HN8B H27 H 0 0 N N N 54.230 37.241 136.185 -3.522 -1.743 2.050  HN8B 6L7 56 
6L7 HN8C H28 H 0 0 N N N 55.099 36.391 135.095 -4.729 -2.862 2.126  HN8C 6L7 57 
6L7 HN8A H29 H 0 0 N N N 53.831 37.294 134.603 -3.618 -2.931 0.912  HN8A 6L7 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6L7 N5  C3   SING N N 1  
6L7 C3  C2   DOUB Y N 2  
6L7 C3  N3   SING Y N 3  
6L7 N1  C2   SING Y N 4  
6L7 N1  C5   DOUB Y N 5  
6L7 C2  C1   SING Y N 6  
6L7 N3  C4   DOUB Y N 7  
6L7 C5  N2   SING Y N 8  
6L7 C4  N4   SING Y N 9  
6L7 C1  N2   SING Y N 10 
6L7 C1  N4   DOUB Y N 11 
6L7 N2  C6   SING N N 12 
6L7 C6  C7   SING N N 13 
6L7 C6  O1   SING N N 14 
6L7 C7  O3   SING N N 15 
6L7 C7  C8   SING N N 16 
6L7 N7  C12  SING N N 17 
6L7 O1  C9   SING N N 18 
6L7 C10 C9   SING N N 19 
6L7 C10 N6   SING N N 20 
6L7 C12 C11  SING N N 21 
6L7 C8  C9   SING N N 22 
6L7 C8  O2   SING N N 23 
6L7 C11 N6   SING N N 24 
6L7 N6  C13  SING N N 25 
6L7 C13 C14  SING N N 26 
6L7 C14 C15  SING N N 27 
6L7 N8  C15  SING N N 28 
6L7 C15 C16  SING N N 29 
6L7 O5  C16  DOUB N N 30 
6L7 C16 O4   SING N N 31 
6L7 C4  HC4  SING N N 32 
6L7 C5  HC5  SING N N 33 
6L7 C6  HC6  SING N N 34 
6L7 C7  HC7  SING N N 35 
6L7 C8  HC8  SING N N 36 
6L7 N5  HN5A SING N N 37 
6L7 N5  HN5B SING N N 38 
6L7 C9  HC9  SING N N 39 
6L7 C10 H10B SING N N 40 
6L7 C10 H10A SING N N 41 
6L7 O2  HO2  SING N N 42 
6L7 O3  HO3  SING N N 43 
6L7 N6  HN6  SING N N 44 
6L7 C11 H11B SING N N 45 
6L7 C11 H11A SING N N 46 
6L7 C12 H12B SING N N 47 
6L7 C12 H12A SING N N 48 
6L7 N7  HN7C SING N N 49 
6L7 N7  HN7B SING N N 50 
6L7 N7  HN7A SING N N 51 
6L7 C13 H13B SING N N 52 
6L7 C13 H13A SING N N 53 
6L7 C14 H14A SING N N 54 
6L7 C14 H14B SING N N 55 
6L7 C15 HC15 SING N N 56 
6L7 O4  H1   SING N N 57 
6L7 N8  HN8B SING N N 58 
6L7 N8  HN8C SING N N 59 
6L7 N8  HN8A SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6L7 InChI            InChI                1.03  "InChI=1S/C16H26N8O5/c17-2-4-23(3-1-8(18)16(27)28)5-9-11(25)12(26)15(29-9)24-7-22-10-13(19)20-6-21-14(10)24/h6-9,11-12,15,25-26H,1-5,17-18H2,(H,27,28)(H2,19,20,21)/p+3/t8-,9+,11+,12+,15+/m0/s1" 
6L7 InChIKey         InChI                1.03  RPXXFSOUEYJZLT-OPYVMVOTSA-Q                                                                                                                                                                       
6L7 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](C[NH+](CC[NH3+])CC[C@H]([NH3+])C(O)=O)[C@@H](O)[C@H]3O"                                                                                                            
6L7 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](C[NH+](CC[NH3+])CC[CH]([NH3+])C(O)=O)[CH](O)[CH]3O"                                                                                                                   
6L7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[NH+](CC[C@@H](C(=O)O)[NH3+])CC[NH3+])O)O)N"                                                                                                     
6L7 SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C[NH+](CCC(C(=O)O)[NH3+])CC[NH3+])O)O)N"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6L7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azaniumylethyl)-[(3~{S})-3-azaniumyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6L7 "Create component" 2016-04-28 EBI  
6L7 "Modify charge"    2017-09-05 EBI  
6L7 "Initial release"  2018-05-30 RCSB 
# 
