data_847
#

_chem_comp.id                                   847
_chem_comp.name                                 "2-(3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-5-BROMO-4-OXIDOPHENYL)SUCCINATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H13 Br N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_16847
_chem_comp.pdbx_formal_charge                   -2
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       445.224
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    847
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O2Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
847  C1      C1      C    0  1  Y  N  N  44.204  -2.907  26.202   5.998  -0.643   0.041  C1      847   1  
847  C2      C2      C    0  1  Y  N  N  44.767  -1.591  26.292   6.064   0.536  -0.712  C2      847   2  
847  C3      C3      C    0  1  Y  N  N  44.758  -0.846  27.475   4.924   1.213  -1.038  C3      847   3  
847  C4      C4      C    0  1  Y  N  N  44.186  -1.439  28.570   3.686   0.738  -0.624  C4      847   4  
847  C5      C5      C    0  1  Y  N  N  43.644  -2.658  28.551   3.601  -0.446   0.134  C5      847   5  
847  C6      C6      C    0  1  Y  N  N  43.626  -3.441  27.398   4.768  -1.138   0.460  C6      847   6  
847  C7      C7      C    0  1  N  N  N  44.229  -3.614  24.981   7.240  -1.367   0.387  C7      847   7  
847  N1      N1      N    0  1  N  N  N  43.785  -4.848  24.926   7.180  -2.488   1.103  N1      847   8  
847  N2      N2      N    1  1  N  N  N  44.717  -3.040  23.900   8.419  -0.897  -0.018  N2      847   9  
847  N3      N3      N    0  1  Y  N  N  44.050  -0.999  29.774   2.391   1.182  -0.788  N3      847  10  
847  N4      N4      N    0  1  Y  N  N  43.144  -3.023  29.727   2.287  -0.664   0.391  N4      847  11  
847  C8      C8      C    0  1  Y  N  N  43.440  -1.936  30.444   1.570   0.291  -0.149  C8      847  12  
847  "C1'"   "C1'"   C    0  1  Y  N  N  43.128  -1.792  31.821   0.098   0.392  -0.079  "C1'"   847  13  
847  "C2'"   "C2'"   C    0  1  Y  N  N  42.555  -2.828  32.599  -0.690  -0.755  -0.197  "C2'"   847  14  
847  "C3'"   "C3'"   C    0  1  Y  N  N  42.257  -2.682  33.982  -2.063  -0.655  -0.131  "C3'"   847  15  
847  CVX     "C31'"  C    0  1  N  N  R  41.592  -3.865  34.784  -2.912  -1.894  -0.258  CVX     847  16  
847  CWX     "C32'"  C    0  1  N  N  N  40.090  -3.862  34.278  -3.829  -1.754  -1.446  CWX     847  17  
847  OXX     "O33'"  O    0  1  N  N  N  39.760  -4.755  33.516  -3.765  -2.557  -2.363  OXX     847  18  
847  OYX     "O34'"  O   -1  1  N  N  N  39.324  -2.987  34.632  -4.634  -0.839  -1.491  OYX     847  19  
847  C6X     "C42'"  C    0  1  N  N  N  41.790  -3.771  36.441  -3.747  -2.073   1.012  C6X     847  20  
847  C7X     "C43'"  C    0  1  N  N  N  42.786  -4.803  37.162  -4.503  -3.375   0.936  C7X     847  21  
847  O8X     "O44'"  O    0  1  N  N  N  43.087  -5.865  36.652  -4.379  -4.125  -0.087  O8X     847  22  
847  O9X     "O45'"  O   -1  1  N  N  N  43.260  -4.519  38.254  -5.266  -3.726   1.896  O9X     847  23  
847  "C4'"   "C4'"   C    0  1  Y  N  N  42.553  -1.451  34.587  -2.666   0.578   0.052  "C4'"   847  24  
847  "C5'"   "C5'"   C    0  1  Y  N  N  43.124  -0.393  33.871  -1.897   1.720   0.170  "C5'"   847  25  
847  "C6'"   "C6'"   C    0  1  Y  N  N  43.397  -0.570  32.510  -0.514   1.636   0.111  "C6'"   847  26  
847  "O6'"   "O6'"   O   -1  1  N  N  N  43.946   0.501  31.850   0.242   2.758   0.227  "O6'"   847  27  
847  "BR5'"  "BR5'"  BR   0  0  N  N  N  43.594   1.311  34.746  -2.732   3.399   0.420  "BR5'"  847  28  
847  HC2     HC2     H    0  1  N  N  N  45.216  -1.147  25.418   7.023   0.912  -1.037  HC2     847  29  
847  HC3     HC3     H    0  1  N  N  N  45.193   0.143  27.528   4.986   2.122  -1.619  HC3     847  30  
847  HC6     HC6     H    0  1  N  N  N  43.175  -4.424  27.411   4.716  -2.050   1.037  HC6     847  31  
847  HH11    HH11    H    0  0  N  N  N  43.439  -5.288  25.769   7.995  -2.963   1.330  HH11    847  32  
847  HH12    HH12    H    0  0  N  N  N  43.776  -5.426  24.112   6.321  -2.830   1.398  HH12    847  33  
847  HH21    HH21    H    0  0  N  N  N  45.062  -2.093  23.946   8.463  -0.081  -0.540  HH21    847  34  
847  HH22    HH22    H    0  0  N  N  N  44.794  -3.500  23.018   9.234  -1.370   0.212  HH22    847  35  
847  HN3     HN3     H    0  1  N  N  N  44.306  -0.124  30.142   2.113   1.978  -1.268  HN3     847  36  
847  "HC2'"  "HC2'"  H    0  0  N  N  N  42.348  -3.778  32.114  -0.224  -1.718  -0.340  "HC2'"  847  37  
847  H31B    H31B    H    0  0  N  N  N  42.034  -4.795  34.460  -2.269  -2.763  -0.396  H31B    847  38  
847  H42A    H42A    H    0  0  N  N  N  42.154  -2.794  36.709  -3.089  -2.085   1.880  H42A    847  39  
847  H42B    H42B    H    0  0  N  N  N  40.821  -3.858  36.911  -4.453  -1.248   1.102  H42B    847  40  
847  "HC4'"  "HC4'"  H    0  0  N  N  N  42.324  -1.287  35.625  -3.743   0.647   0.103  "HC4'"  847  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
847  C1     C2      DOUB  Y  N   1  
847  C1     C6      SING  Y  N   2  
847  C1     C7      SING  N  N   3  
847  C2     C3      SING  Y  N   4  
847  C2     HC2     SING  N  N   5  
847  C3     C4      DOUB  Y  N   6  
847  C3     HC3     SING  N  N   7  
847  C4     C5      SING  Y  N   8  
847  C4     N3      SING  Y  N   9  
847  C5     C6      DOUB  Y  N  10  
847  C5     N4      SING  Y  N  11  
847  C6     HC6     SING  N  N  12  
847  C7     N1      SING  N  N  13  
847  C7     N2      DOUB  N  N  14  
847  N1     HH11    SING  N  N  15  
847  N1     HH12    SING  N  N  16  
847  N2     HH21    SING  N  N  17  
847  N2     HH22    SING  N  N  18  
847  N3     C8      SING  Y  N  19  
847  N3     HN3     SING  N  N  20  
847  N4     C8      DOUB  Y  N  21  
847  C8     "C1'"   SING  Y  N  22  
847  "C1'"  "C2'"   DOUB  Y  N  23  
847  "C1'"  "C6'"   SING  Y  N  24  
847  "C2'"  "C3'"   SING  Y  N  25  
847  "C2'"  "HC2'"  SING  N  N  26  
847  "C3'"  CVX     SING  N  N  27  
847  "C3'"  "C4'"   DOUB  Y  N  28  
847  CVX    CWX     SING  N  N  29  
847  CVX    C6X     SING  N  N  30  
847  CVX    H31B    SING  N  N  31  
847  CWX    OXX     DOUB  N  N  32  
847  CWX    OYX     SING  N  N  33  
847  C6X    C7X     SING  N  N  34  
847  C6X    H42A    SING  N  N  35  
847  C6X    H42B    SING  N  N  36  
847  C7X    O8X     DOUB  N  N  37  
847  C7X    O9X     SING  N  N  38  
847  "C4'"  "C5'"   SING  Y  N  39  
847  "C4'"  "HC4'"  SING  N  N  40  
847  "C5'"  "C6'"   DOUB  Y  N  41  
847  "C5'"  "BR5'"  SING  N  N  42  
847  "C6'"  "O6'"   SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
847  SMILES            ACDLabs               10.04  "[O-]C(=O)CC(C([O-])=O)c3cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(Br)c3"  
847  SMILES_CANONICAL  CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(Br)c3[O-])[C@@H](CC([O-])=O)C([O-])=O"  
847  SMILES            CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(Br)c3[O-])[CH](CC([O-])=O)C([O-])=O"  
847  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc2c(cc1C(=[NH2+])N)nc([nH]2)c3cc(cc(c3[O-])Br)[C@@H](CC(=O)[O-])C(=O)[O-]"  
847  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc2c(cc1C(=[NH2+])N)nc([nH]2)c3cc(cc(c3[O-])Br)C(CC(=O)[O-])C(=O)[O-]"  
847  InChI             InChI                 1.03   "InChI=1S/C18H15BrN4O5/c19-11-4-8(9(18(27)28)6-14(24)25)3-10(15(11)26)17-22-12-2-1-7(16(20)21)5-13(12)23-17/h1-5,9,26H,6H2,(H3,20,21)(H,22,23)(H,24,25)(H,27,28)/p-2/t9-/m1/s1"  
847  InChIKey          InChI                 1.03   SJMNJNRKVVVGRB-SECBINFHSA-L  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
847  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R)-2-(3-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-5-bromo-4-oxidophenyl)butanedioate"  
847  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-bromo-4-oxido-phenyl]butanedioate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
847  "Create component"      2003-03-14  RCSB  
847  "Modify aromatic_flag"  2011-06-04  RCSB  
847  "Modify descriptor"     2011-06-04  RCSB  
847  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     847
_pdbx_chem_comp_synonyms.name        CRA_16847
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
