data_867
# 
_chem_comp.id                                    867 
_chem_comp.name                                  "methyl 6-[4-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H38 N10 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-04 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        650.686 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     867 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PUQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
867 C1  C1  C 0 1 Y N N 42.178 25.246 126.422 13.306  -1.164 -0.376 C1  867 1  
867 C2  C2  C 0 1 Y N N 43.289 25.217 125.578 13.351  0.218  -0.119 C2  867 2  
867 C3  C3  C 0 1 Y N N 44.564 25.232 126.096 12.218  0.907  0.190  C3  867 3  
867 N1  N1  N 0 1 N N N 47.534 25.329 130.052 7.427   0.917  0.937  N1  867 4  
867 C5  C4  C 0 1 Y N N 43.647 25.310 128.363 10.925  -1.162 -0.004 C5  867 5  
867 C6  C5  C 0 1 Y N N 42.354 25.296 127.788 12.104  -1.852 -0.320 C6  867 6  
867 C11 C6  C 0 1 N N N 40.812 25.232 125.810 14.548  -1.886 -0.714 C11 867 7  
867 C12 C7  C 0 1 N N N 39.567 23.445 126.745 16.900  -1.997 -1.109 C12 867 8  
867 C13 C8  C 0 1 N N N 48.663 26.038 129.694 6.259   0.539  0.380  C13 867 9  
867 C16 C9  C 0 1 N N N 52.360 28.377 131.338 1.371   1.105  0.132  C16 867 10 
867 C17 C10 C 0 1 N N N 52.675 31.411 130.837 -2.214  2.112  0.523  C17 867 11 
867 C10 C11 C 0 1 Y N N 43.851 25.355 129.765 9.690   -1.832 0.061  C10 867 12 
867 C14 C12 C 0 1 N N N 51.071 26.411 130.169 3.839   0.716  0.158  C14 867 13 
867 C15 C13 C 0 1 N N N 51.043 27.860 130.705 2.697   1.534  0.764  C15 867 14 
867 C18 C14 C 0 1 N N N 51.217 34.776 130.206 -7.130  2.426  0.026  C18 867 15 
867 C19 C15 C 0 1 N N R 50.954 35.961 131.124 -8.297  1.818  -0.754 C19 867 16 
867 C20 C16 C 0 1 N N S 49.497 36.159 131.536 -9.610  2.562  -0.424 C20 867 17 
867 C21 C17 C 0 1 N N R 48.958 36.963 130.350 -10.679 1.447  -0.406 C21 867 18 
867 C22 C18 C 0 1 N N R 50.136 37.940 130.195 -9.886  0.161  -0.728 C22 867 19 
867 C23 C19 C 0 1 Y N N 50.181 37.932 127.669 -9.931  -1.416 1.241  C23 867 20 
867 C24 C20 C 0 1 Y N N 50.468 39.980 127.228 -11.594 -2.712 0.733  C24 867 21 
867 C25 C21 C 0 1 Y N N 50.651 41.261 126.686 -12.618 -3.670 0.636  C25 867 22 
867 C26 C22 C 0 1 Y N N 50.719 42.040 128.862 -13.260 -2.728 -1.371 C26 867 23 
867 C27 C23 C 0 1 Y N N 50.428 39.885 128.606 -11.469 -1.767 -0.299 C27 867 24 
867 C28 C24 C 0 1 N N N 52.125 29.529 132.326 0.229   1.923  0.738  C28 867 25 
867 C29 C25 C 0 1 N N N 52.856 33.184 129.102 -4.656  2.366  0.371  C29 867 26 
867 C30 C26 C 0 1 N N N 52.689 34.402 130.029 -5.823  1.758  -0.409 C30 867 27 
867 C4  C27 C 0 1 Y N N 44.782 25.280 127.508 10.979  0.232  0.254  C4  867 28 
867 C7  C28 C 0 1 Y N N 46.075 25.297 128.101 9.799   0.919  0.569  C7  867 29 
867 C8  C29 C 0 1 Y N N 46.238 25.368 129.469 8.605   0.233  0.623  C8  867 30 
867 C9  C30 C 0 1 Y N N 45.110 25.369 130.291 8.560   -1.143 0.368  C9  867 31 
867 N10 N2  N 0 1 Y N N 50.547 40.882 129.481 -12.316 -1.812 -1.322 N10 867 32 
867 N2  N3  N 0 1 N N N 49.797 25.728 130.391 5.109   1.127  0.763  N2  867 33 
867 N3  N4  N 0 1 N N N 51.781 30.777 131.647 -1.040  1.512  0.133  N3  867 34 
867 N4  N5  N 0 1 N N N 52.264 31.972 129.670 -3.405  1.727  -0.045 N4  867 35 
867 N5  N6  N 0 1 N N N 53.935 31.508 131.040 -2.197  3.046  1.432  N5  867 36 
867 N6  N7  N 0 1 Y N N 50.246 38.556 128.883 -10.409 -0.968 0.046  N6  867 37 
867 N7  N8  N 0 1 Y N N 50.300 38.736 126.647 -10.627 -2.440 1.642  N7  867 38 
867 N8  N9  N 0 1 N N N 50.708 41.520 125.368 -12.790 -4.625 1.622  N8  867 39 
867 N9  N10 N 0 1 Y N N 50.773 42.282 127.557 -13.417 -3.636 -0.426 N9  867 40 
867 O1  O1  O 0 1 N N N 45.694 25.207 125.312 12.278  2.242  0.435  O1  867 41 
867 O2  O2  O 0 1 N N N 39.863 24.863 126.675 15.719  -1.223 -0.770 O2  867 42 
867 O3  O3  O 0 1 N N N 40.574 25.515 124.663 14.514  -3.079 -0.942 O3  867 43 
867 O4  O4  O 0 1 N N N 48.660 26.886 128.804 6.244   -0.333 -0.467 O4  867 44 
867 O5  O5  O 0 1 N N N 49.391 36.882 132.756 -9.908  3.526  -1.436 O5  867 45 
867 O6  O6  O 0 1 N N N 47.690 37.551 130.642 -11.670 1.688  -1.407 O6  867 46 
867 O7  O7  O 0 1 N N N 51.307 37.182 130.436 -8.529  0.456  -0.333 O7  867 47 
867 H1  H1  H 0 1 N N N 43.147 25.182 124.508 14.296  0.740  -0.166 H1  867 48 
867 H7  H2  H 0 1 N N N 47.642 24.704 130.825 7.450   1.663  1.556  H7  867 49 
867 H2  H3  H 0 1 N N N 41.488 25.325 128.432 12.076  -2.913 -0.518 H2  867 50 
867 H9  H4  H 0 1 N N N 38.775 23.272 127.488 17.772  -1.344 -1.119 H9  867 51 
867 H10 H5  H 0 1 N N N 39.229 23.092 125.759 17.044  -2.783 -0.367 H10 867 52 
867 H8  H6  H 0 1 N N N 40.473 22.896 127.040 16.770  -2.446 -2.093 H8  867 53 
867 H17 H7  H 0 1 N N N 52.844 27.547 131.873 1.410   1.277  -0.944 H17 867 54 
867 H16 H8  H 0 1 N N N 53.022 28.731 130.534 1.203   0.046  0.325  H16 867 55 
867 H5  H9  H 0 1 N N N 42.998 25.379 130.426 9.640   -2.894 -0.133 H5  867 56 
867 H13 H10 H 0 1 N N N 51.868 25.855 130.685 3.671   -0.343 0.351  H13 867 57 
867 H12 H11 H 0 1 N N N 51.280 26.434 129.089 3.878   0.888  -0.918 H12 867 58 
867 H15 H12 H 0 1 N N N 50.790 28.524 129.866 2.866   2.593  0.571  H15 867 59 
867 H14 H13 H 0 1 N N N 50.256 27.920 131.471 2.659   1.362  1.840  H14 867 60 
867 H21 H14 H 0 1 N N N 50.806 35.016 129.214 -7.076  3.496  -0.176 H21 867 61 
867 H22 H15 H 0 1 N N N 50.692 33.902 130.619 -7.283  2.265  1.093  H22 867 62 
867 H23 H16 H 0 1 N N N 51.567 35.851 132.031 -8.098  1.857  -1.825 H23 867 63 
867 H24 H17 H 0 1 N N N 48.986 35.187 131.595 -9.541  3.044  0.552  H24 867 64 
867 H26 H18 H 0 1 N N N 48.899 36.316 129.462 -11.142 1.377  0.578  H26 867 65 
867 H28 H19 H 0 1 N N N 50.035 38.725 130.959 -9.932  -0.056 -1.795 H28 867 66 
867 H29 H20 H 0 1 N N N 50.043 36.866 127.564 -9.094  -0.989 1.774  H29 867 67 
867 H32 H21 H 0 1 N N N 50.830 42.902 129.503 -13.933 -2.737 -2.217 H32 867 68 
867 H33 H22 H 0 1 N N N 51.301 29.254 133.001 0.191   1.751  1.814  H33 867 69 
867 H34 H23 H 0 1 N N N 53.043 29.686 132.912 0.398   2.982  0.545  H34 867 70 
867 H36 H24 H 0 1 N N N 53.929 33.010 128.936 -4.602  3.436  0.169  H36 867 71 
867 H35 H25 H 0 1 N N N 52.367 33.400 128.141 -4.809  2.205  1.438  H35 867 72 
867 H38 H26 H 0 1 N N N 53.118 34.163 131.013 -5.878  0.688  -0.207 H38 867 73 
867 H37 H27 H 0 1 N N N 53.225 35.258 129.594 -5.670  1.919  -1.476 H37 867 74 
867 H3  H28 H 0 1 N N N 46.948 25.253 127.466 9.825   1.981  0.768  H3  867 75 
867 H4  H29 H 0 1 N N N 45.236 25.381 131.364 7.614   -1.663 0.416  H4  867 76 
867 H11 H30 H 0 1 N N N 49.754 25.005 131.081 5.121   1.822  1.439  H11 867 77 
867 H18 H31 H 0 1 N N N 50.872 31.173 131.779 -1.053  0.817  -0.543 H18 867 78 
867 H19 H32 H 0 1 N N N 51.516 31.533 129.172 -3.417  1.031  -0.721 H19 867 79 
867 H20 H33 H 0 1 N N N 54.214 31.055 131.887 -1.357  3.318  1.833  H20 867 80 
867 H31 H34 H 0 1 N N N 50.842 42.501 125.226 -12.200 -4.639 2.392  H31 867 81 
867 H30 H35 H 0 1 N N N 51.471 41.017 124.962 -13.500 -5.281 1.543  H30 867 82 
867 H6  H36 H 0 1 N N N 46.465 25.224 125.867 12.162  2.792  -0.351 H6  867 83 
867 H25 H37 H 0 1 N N N 49.734 36.355 133.468 -10.723 4.022  -1.279 H25 867 84 
867 H27 H38 H 0 1 N N N 47.034 36.868 130.718 -12.158 2.514  -1.287 H27 867 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
867 O3  C11 DOUB N N 1  
867 O1  C3  SING N N 2  
867 N8  C25 SING N N 3  
867 C2  C3  DOUB Y N 4  
867 C2  C1  SING Y N 5  
867 C11 C1  SING N N 6  
867 C11 O2  SING N N 7  
867 C3  C4  SING Y N 8  
867 C1  C6  DOUB Y N 9  
867 N7  C24 SING Y N 10 
867 N7  C23 DOUB Y N 11 
867 O2  C12 SING N N 12 
867 C25 C24 DOUB Y N 13 
867 C25 N9  SING Y N 14 
867 C24 C27 SING Y N 15 
867 C4  C7  DOUB Y N 16 
867 C4  C5  SING Y N 17 
867 N9  C26 DOUB Y N 18 
867 C23 N6  SING Y N 19 
867 C6  C5  SING Y N 20 
867 C7  C8  SING Y N 21 
867 C5  C10 DOUB Y N 22 
867 C27 N6  SING Y N 23 
867 C27 N10 DOUB Y N 24 
867 O4  C13 DOUB N N 25 
867 C26 N10 SING Y N 26 
867 N6  C22 SING N N 27 
867 C29 N4  SING N N 28 
867 C29 C30 SING N N 29 
867 C8  N1  SING N N 30 
867 C8  C9  DOUB Y N 31 
867 N4  C17 SING N N 32 
867 C13 N1  SING N N 33 
867 C13 N2  SING N N 34 
867 C10 C9  SING Y N 35 
867 C30 C18 SING N N 36 
867 C14 N2  SING N N 37 
867 C14 C15 SING N N 38 
867 C22 C21 SING N N 39 
867 C22 O7  SING N N 40 
867 C18 C19 SING N N 41 
867 C21 O6  SING N N 42 
867 C21 C20 SING N N 43 
867 O7  C19 SING N N 44 
867 C15 C16 SING N N 45 
867 C17 N5  DOUB N N 46 
867 C17 N3  SING N N 47 
867 C19 C20 SING N N 48 
867 C16 C28 SING N N 49 
867 C20 O5  SING N N 50 
867 N3  C28 SING N N 51 
867 C2  H1  SING N N 52 
867 N1  H7  SING N N 53 
867 C6  H2  SING N N 54 
867 C12 H9  SING N N 55 
867 C12 H10 SING N N 56 
867 C12 H8  SING N N 57 
867 C16 H17 SING N N 58 
867 C16 H16 SING N N 59 
867 C10 H5  SING N N 60 
867 C14 H13 SING N N 61 
867 C14 H12 SING N N 62 
867 C15 H15 SING N N 63 
867 C15 H14 SING N N 64 
867 C18 H21 SING N N 65 
867 C18 H22 SING N N 66 
867 C19 H23 SING N N 67 
867 C20 H24 SING N N 68 
867 C21 H26 SING N N 69 
867 C22 H28 SING N N 70 
867 C23 H29 SING N N 71 
867 C26 H32 SING N N 72 
867 C28 H33 SING N N 73 
867 C28 H34 SING N N 74 
867 C29 H36 SING N N 75 
867 C29 H35 SING N N 76 
867 C30 H38 SING N N 77 
867 C30 H37 SING N N 78 
867 C7  H3  SING N N 79 
867 C9  H4  SING N N 80 
867 N2  H11 SING N N 81 
867 N3  H18 SING N N 82 
867 N4  H19 SING N N 83 
867 N5  H20 SING N N 84 
867 N8  H31 SING N N 85 
867 N8  H30 SING N N 86 
867 O1  H6  SING N N 87 
867 O5  H25 SING N N 88 
867 O6  H27 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
867 InChI            InChI                1.06  "InChI=1S/C30H38N10O7/c1-46-28(44)17-11-16-6-7-18(13-19(16)20(41)12-17)39-30(45)35-9-3-2-8-33-29(32)34-10-4-5-21-23(42)24(43)27(47-21)40-15-38-22-25(31)36-14-37-26(22)40/h6-7,11-15,21,23-24,27,41-43H,2-5,8-10H2,1H3,(H2,31,36,37)(H3,32,33,34)(H2,35,39,45)/t21-,23-,24-,27-/m1/s1" 
867 InChIKey         InChI                1.06  DMXKZVDCWGJXLG-VBHAUSMQSA-N                                                                                                                                                                                                                                                            
867 SMILES_CANONICAL CACTVS               3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCCC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1"                                                                                                                                                                                        
867 SMILES           CACTVS               3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCCC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1"                                                                                                                                                                                             
867 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NCCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                                                 
867 SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCCCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           867 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 6-[4-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
867 "Create component"  2021-10-04 PDBE 
867 "Initial release"   2022-04-06 RCSB 
867 "Modify descriptor" 2022-08-22 RCSB 
# 
