data_A1AM7
# 
_chem_comp.id                                    A1AM7 
_chem_comp.name                                  "3-(2-hydroxyethyl)pyrimidin-4(3H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H8 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-15 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        140.140 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AM7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H3T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AM7 N1 N1 N 0 1 N N N N N N 13.170 -4.108 34.666 -2.057 1.166  0.289  N1 A1AM7 1  
A1AM7 C4 C1 C 0 1 N N N N N N 13.231 -5.938 33.106 -1.690 -1.138 0.198  C4 A1AM7 2  
A1AM7 C5 C2 C 0 1 N N N N N N 14.619 -6.183 33.342 -0.385 -0.883 -0.272 C5 A1AM7 3  
A1AM7 N  N2 N 0 1 N N N N N N 15.175 -5.326 34.280 0.005  0.399  -0.433 N  A1AM7 4  
A1AM7 C  C3 C 0 1 N N N N N N 17.548 -4.779 33.792 2.308  0.828  0.268  C  A1AM7 5  
A1AM7 O  O1 O 0 1 N N N N N N 17.100 -3.456 33.535 2.418  -0.434 0.929  O  A1AM7 6  
A1AM7 C1 C4 C 0 1 N N N N N N 16.578 -5.540 34.673 1.353  0.700  -0.921 C1 A1AM7 7  
A1AM7 C2 C5 C 0 1 N N N N N N 14.428 -4.348 34.879 -0.848 1.402  -0.146 C2 A1AM7 8  
A1AM7 C3 C6 C 0 1 N N N N N N 12.581 -4.943 33.751 -2.503 -0.079 0.470  C3 A1AM7 9  
A1AM7 O1 O2 O 0 1 N N N N N N 15.310 -7.042 32.794 0.376  -1.803 -0.526 O1 A1AM7 10 
A1AM7 H7 H1 H 0 1 N N N N N N 12.693 -6.556 32.402 -2.037 -2.150 0.341  H7 A1AM7 11 
A1AM7 H2 H2 H 0 1 N N N N N N 17.653 -5.312 32.835 1.922  1.572  0.965  H2 A1AM7 12 
A1AM7 H1 H3 H 0 1 N N N N N N 18.525 -4.733 34.295 3.291  1.139  -0.088 H1 A1AM7 13 
A1AM7 H  H4 H 0 1 N N N N N N 17.730 -3.010 32.982 3.009  -0.426 1.694  H  A1AM7 14 
A1AM7 H4 H5 H 0 1 N N N N N N 16.805 -6.614 34.602 1.692  -0.105 -1.574 H4 A1AM7 15 
A1AM7 H3 H6 H 0 1 N N N N N N 16.708 -5.206 35.713 1.338  1.637  -1.477 H3 A1AM7 16 
A1AM7 H5 H7 H 0 1 N N N N N N 14.932 -3.717 35.596 -0.525 2.424  -0.279 H5 A1AM7 17 
A1AM7 H6 H8 H 0 1 N N N N N N 11.534 -4.797 33.532 -3.507 -0.247 0.831  H6 A1AM7 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AM7 O  C  SING N N 1  
A1AM7 C  C1 SING N N 2  
A1AM7 C1 N  SING N N 3  
A1AM7 N  C2 SING N N 4  
A1AM7 C2 N1 DOUB N N 5  
A1AM7 N1 C3 SING N N 6  
A1AM7 C3 C4 DOUB N N 7  
A1AM7 C4 C5 SING N N 8  
A1AM7 N  C5 SING N N 9  
A1AM7 C5 O1 DOUB N N 10 
A1AM7 C4 H7 SING N N 11 
A1AM7 C  H2 SING N N 12 
A1AM7 C  H1 SING N N 13 
A1AM7 O  H  SING N N 14 
A1AM7 C1 H4 SING N N 15 
A1AM7 C1 H3 SING N N 16 
A1AM7 C2 H5 SING N N 17 
A1AM7 C3 H6 SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AM7 SMILES           ACDLabs              12.01 OCCN1C=NC=CC1=O                                             
A1AM7 InChI            InChI                1.06  "InChI=1S/C6H8N2O2/c9-4-3-8-5-7-2-1-6(8)10/h1-2,5,9H,3-4H2" 
A1AM7 InChIKey         InChI                1.06  HFZYCRPBIIVEAW-UHFFFAOYSA-N                                 
A1AM7 SMILES_CANONICAL CACTVS               3.385 OCCN1C=NC=CC1=O                                             
A1AM7 SMILES           CACTVS               3.385 OCCN1C=NC=CC1=O                                             
A1AM7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN=CN(C1=O)CCO"                                         
A1AM7 SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CN=CN(C1=O)CCO"                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AM7 "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2-hydroxyethyl)pyrimidin-4(3H)-one" 
A1AM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-(2-hydroxyethyl)pyrimidin-4-one"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AM7 "Create component" 2024-04-15 RCSB 
A1AM7 "Initial release"  2024-04-24 RCSB 
# 
