data_NO7
#

_chem_comp.id                                   NO7
_chem_comp.name                                 "9-{5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-ribofuranosyl}-N-(prop-2-yn-1-yl)-9H-purin-6-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H17 N5 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-23
_chem_comp.pdbx_modified_date                   2019-06-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       465.249
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NO7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P2U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NO7  C10  C1   C  0  1  Y  N  N   -1.268  12.867  -16.415   3.950   0.465   0.154  C10  NO7   1  
NO7  C17  C2   C  0  1  N  N  N   -6.285   9.183  -16.766  -2.098  -1.994  -0.320  C17  NO7   2  
NO7  C01  C3   C  0  1  N  N  N    2.601  16.750  -18.320   7.651   4.531  -1.662  C01  NO7   3  
NO7  C02  C4   C  0  1  N  N  N    2.250  16.025  -17.440   7.440   3.572  -1.019  C02  NO7   4  
NO7  C03  C5   C  0  1  N  N  N    1.791  15.078  -16.306   7.176   2.369  -0.213  C03  NO7   5  
NO7  C05  C6   C  0  1  Y  N  N    0.043  13.242  -16.668   5.291   0.860   0.295  C05  NO7   6  
NO7  C07  C7   C  0  1  Y  N  N    0.514  11.023  -17.089   5.629  -0.920   1.724  C07  NO7   7  
NO7  C09  C8   C  0  1  Y  N  N   -1.676  11.490  -16.510   3.517  -0.676   0.851  C09  NO7   8  
NO7  C12  C9   C  0  1  Y  N  N   -3.475  12.661  -15.923   1.852   0.179  -0.314  C12  NO7   9  
NO7  C14  C10  C  0  1  N  N  S   -3.802  10.453  -16.159   1.304  -1.891   1.021  C14  NO7  10  
NO7  C16  C11  C  0  1  N  N  R   -4.921   8.619  -16.880  -0.570  -1.919  -0.340  C16  NO7  11  
NO7  C27  C12  C  0  1  N  N  S   -4.443   8.331  -15.513   0.044  -3.335  -0.486  C27  NO7  12  
NO7  C29  C13  C  0  1  N  N  R   -3.699   9.479  -15.060   1.449  -3.145   0.137  C29  NO7  13  
NO7  N04  N1   N  0  1  N  N  N    0.410  14.654  -16.561   5.775   1.972  -0.372  N04  NO7  14  
NO7  N06  N2   N  0  1  Y  N  N    0.931  12.308  -17.009   6.083   0.142   1.084  N06  NO7  15  
NO7  N08  N3   N  0  1  Y  N  N   -0.739  10.635  -16.848   4.384  -1.332   1.615  N08  NO7  16  
NO7  N11  N4   N  0  1  Y  N  N   -2.535  13.613  -16.014   2.886   0.936  -0.540  N11  NO7  17  
NO7  N13  N5   N  0  1  Y  N  N   -2.919  11.544  -16.202   2.192  -0.833   0.534  N13  NO7  18  
NO7  O15  O1   O  0  1  N  N  N   -3.936   9.637  -17.492  -0.066  -1.463   0.933  O15  NO7  19  
NO7  O18  O2   O  0  1  N  N  N   -6.687   9.799  -17.972  -2.639  -0.671  -0.302  O18  NO7  20  
NO7  O20  O3   O  0  1  N  N  N   -8.912  11.075  -17.668  -4.887  -0.892  -1.648  O20  NO7  21  
NO7  O21  O4   O  0  1  N  N  N   -8.525  10.244  -19.711  -4.839  -1.075   0.868  O21  NO7  22  
NO7  O22  O5   O  0  1  N  N  N   -9.115   8.528  -17.878  -4.464   1.213  -0.131  O22  NO7  23  
NO7  O24  O6   O  0  1  N  N  N  -10.600   6.545  -18.741  -5.206   3.614   0.643  O24  NO7  24  
NO7  O25  O7   O  0  1  N  N  N  -11.732   8.278  -17.743  -6.829   2.141  -0.809  O25  NO7  25  
NO7  O26  O8   O  0  1  N  N  N  -10.861   8.561  -19.844  -6.291   1.536   1.582  O26  NO7  26  
NO7  O28  O9   O  0  1  N  N  N   -3.614   7.115  -15.560   0.142  -3.709  -1.862  O28  NO7  27  
NO7  O30  O10  O  0  1  N  N  N   -2.303   9.109  -14.721   2.423  -2.927  -0.885  O30  NO7  28  
NO7  P19  P1   P  0  1  N  N  N   -8.318   9.913  -18.315  -4.221  -0.372  -0.278  P19  NO7  29  
NO7  P23  P2   P  0  1  N  N  N  -10.548   7.993  -18.539  -5.710   2.113   0.349  P23  NO7  30  
NO7  H1   H1   H  0  1  N  N  N   -6.297   9.931  -15.960  -2.448  -2.518  -1.209  H1   NO7  31  
NO7  H2   H2   H  0  1  N  N  N   -6.989   8.373  -16.525  -2.423  -2.531   0.571  H2   NO7  32  
NO7  H3   H3   H  0  1  N  N  N    2.913  17.394  -19.102   7.839   5.390  -2.237  H3   NO7  33  
NO7  H4   H4   H  0  1  N  N  N    2.447  14.196  -16.275   7.824   1.558  -0.547  H4   NO7  34  
NO7  H5   H5   H  0  1  N  N  N    1.842  15.606  -15.342   7.376   2.584   0.837  H5   NO7  35  
NO7  H6   H6   H  0  1  N  N  N    1.237  10.269  -17.364   6.307  -1.475   2.356  H6   NO7  36  
NO7  H7   H7   H  0  1  N  N  N   -4.512  12.810  -15.662   0.870   0.327  -0.740  H7   NO7  37  
NO7  H8   H8   H  0  1  N  N  N   -4.799  10.900  -16.033   1.550  -2.136   2.054  H8   NO7  38  
NO7  H9   H9   H  0  1  N  N  N   -4.932   7.702  -17.488  -0.229  -1.269  -1.146  H9   NO7  39  
NO7  H10  H10  H  0  1  N  N  N   -5.306   8.160  -14.853  -0.534  -4.069   0.075  H10  NO7  40  
NO7  H11  H11  H  0  1  N  N  N   -4.182   9.898  -14.165   1.717  -4.010   0.743  H11  NO7  41  
NO7  H12  H12  H  0  1  N  N  N    0.141  15.080  -17.425   5.187   2.489  -0.945  H12  NO7  42  
NO7  H13  H13  H  0  1  N  N  N   -9.241  11.672  -18.329  -4.529  -0.473  -2.443  H13  NO7  43  
NO7  H14  H14  H  0  1  N  N  N  -10.819   6.359  -19.647  -5.906   4.213   0.937  H14  NO7  44  
NO7  H15  H15  H  0  1  N  N  N  -12.367   8.743  -18.275  -6.518   2.507  -1.648  H15  NO7  45  
NO7  H16  H16  H  0  1  N  N  N   -3.297   6.914  -14.687   0.521  -4.588  -2.004  H16  NO7  46  
NO7  H17  H17  H  0  1  N  N  N   -2.306   8.481  -14.008   2.555  -3.684  -1.472  H17  NO7  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NO7  O26  P23  DOUB  N  N   1  
NO7  O21  P19  DOUB  N  N   2  
NO7  O24  P23  SING  N  N   3  
NO7  P23  O22  SING  N  N   4  
NO7  P23  O25  SING  N  N   5  
NO7  C01  C02  TRIP  N  N   6  
NO7  P19  O18  SING  N  N   7  
NO7  P19  O22  SING  N  N   8  
NO7  P19  O20  SING  N  N   9  
NO7  O18  C17  SING  N  N  10  
NO7  O15  C16  SING  N  N  11  
NO7  O15  C14  SING  N  N  12  
NO7  C02  C03  SING  N  N  13  
NO7  C07  N06  DOUB  Y  N  14  
NO7  C07  N08  SING  Y  N  15  
NO7  N06  C05  SING  Y  N  16  
NO7  C16  C17  SING  N  N  17  
NO7  C16  C27  SING  N  N  18  
NO7  N08  C09  DOUB  Y  N  19  
NO7  C05  N04  SING  N  N  20  
NO7  C05  C10  DOUB  Y  N  21  
NO7  N04  C03  SING  N  N  22  
NO7  C09  C10  SING  Y  N  23  
NO7  C09  N13  SING  Y  N  24  
NO7  C10  N11  SING  Y  N  25  
NO7  N13  C14  SING  N  N  26  
NO7  N13  C12  SING  Y  N  27  
NO7  C14  C29  SING  N  N  28  
NO7  N11  C12  DOUB  Y  N  29  
NO7  O28  C27  SING  N  N  30  
NO7  C27  C29  SING  N  N  31  
NO7  C29  O30  SING  N  N  32  
NO7  C17  H1   SING  N  N  33  
NO7  C17  H2   SING  N  N  34  
NO7  C01  H3   SING  N  N  35  
NO7  C03  H4   SING  N  N  36  
NO7  C03  H5   SING  N  N  37  
NO7  C07  H6   SING  N  N  38  
NO7  C12  H7   SING  N  N  39  
NO7  C14  H8   SING  N  N  40  
NO7  C16  H9   SING  N  N  41  
NO7  C27  H10  SING  N  N  42  
NO7  C29  H11  SING  N  N  43  
NO7  N04  H12  SING  N  N  44  
NO7  O20  H13  SING  N  N  45  
NO7  O24  H14  SING  N  N  46  
NO7  O25  H15  SING  N  N  47  
NO7  O28  H16  SING  N  N  48  
NO7  O30  H17  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NO7  SMILES            ACDLabs               12.01  "c21ncn(c1ncnc2NCC#C)C3C(C(C(COP(O)(=O)OP(O)(O)=O)O3)O)O"  
NO7  InChI             InChI                 1.03   "InChI=1S/C13H17N5O10P2/c1-2-3-14-11-8-12(16-5-15-11)18(6-17-8)13-10(20)9(19)7(27-13)4-26-30(24,25)28-29(21,22)23/h1,5-7,9-10,13,19-20H,3-4H2,(H,24,25)(H,14,15,16)(H2,21,22,23)/t7-,9-,10-,13+/m1/s1"  
NO7  InChIKey          InChI                 1.03   DYWGWOPDXRINLT-HMMKDHSLSA-N  
NO7  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3c(NCC#C)ncnc23"  
NO7  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3c(NCC#C)ncnc23"  
NO7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C#CCNc1c2c(ncn1)n(cn2)[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O"  
NO7  SMILES            "OpenEye OEToolkits"  2.0.7  "C#CCNc1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NO7  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-{5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-ribofuranosyl}-N-(prop-2-yn-1-yl)-9H-purin-6-amine"  
NO7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{S})-3,4-bis(oxidanyl)-5-[6-(prop-2-ynylamino)purin-9-yl]oxolan-2-yl]methyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NO7  "Create component"  2019-05-23  RCSB  
NO7  "Initial release"   2019-06-19  RCSB  
##
