data_V47
#

_chem_comp.id                                   V47
_chem_comp.name                                 "9-[7-(3-carboxyphenyl)-5,6-dideoxy-beta-D-ribo-heptodialdo-1,4-furanosyl]-9H-purin-6-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H19 N5 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Aminofutalosine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-23
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.384
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V47
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XI9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V47  O4   O1   O  0  1  N  N  N   8.823  -23.189   7.491   1.414   4.063   0.203  O4   V47   1  
V47  C4   C1   C  0  1  Y  N  N  13.106  -25.203   5.695   3.005  -1.148  -1.111  C4   V47   2  
V47  C5   C2   C  0  1  N  N  R  12.396  -23.220   7.171   2.532   0.817   0.400  C5   V47   3  
V47  C6   C3   C  0  1  N  N  R  10.862  -23.433   8.852   0.466   1.811   0.276  C6   V47   4  
V47  C3   C4   C  0  1  Y  N  N  14.876  -24.327   4.738   5.019  -1.688  -0.518  C3   V47   5  
V47  O3   O2   O  0  1  N  N  N   8.700  -19.525  16.015  -8.035  -0.317  -1.504  O3   V47   6  
V47  C2   C5   C  0  1  Y  N  N  14.339  -23.411   5.649   4.637  -0.581   0.258  C2   V47   7  
V47  O2   O3   O  0  1  N  N  N  10.349  -19.468  17.422  -8.817  -1.699   0.047  O2   V47   8  
V47  C1   C6   C  0  1  Y  N  N  16.003  -21.882   5.065   6.681  -0.635   1.308  C1   V47   9  
V47  O1   O4   O  0  1  N  N  N   9.921  -21.645  11.489  -3.363   1.405  -1.328  O1   V47  10  
V47  N1   N1   N  0  1  Y  N  N  16.550  -22.733   4.182   7.086  -1.673   0.600  N1   V47  11  
V47  C7   C7   C  0  1  N  N  N  10.491  -24.148  10.165  -0.896   1.751  -0.417  C7   V47  12  
V47  N2   N2   N  0  1  Y  N  N  14.913  -22.189   5.793   5.493  -0.092   1.151  N2   V47  13  
V47  C8   C8   C  0  1  N  N  N  11.315  -23.592  11.341  -1.832   0.835   0.374  C8   V47  14  
V47  C9   C9   C  0  1  N  N  N  10.740  -22.340  12.015  -3.174   0.776  -0.309  C9   V47  15  
V47  C10  C10  C  0  1  Y  N  N  11.234  -21.800  13.321  -4.254  -0.045   0.261  C10  V47  16  
V47  C11  C11  C  0  1  Y  N  N  12.579  -21.926  13.660  -4.037  -0.772   1.436  C11  V47  17  
V47  C12  C12  C  0  1  Y  N  N  13.056  -21.426  14.868  -5.050  -1.543   1.971  C12  V47  18  
V47  C13  C13  C  0  1  Y  N  N  12.200  -20.753  15.720  -6.283  -1.601   1.352  C13  V47  19  
V47  C14  C14  C  0  1  Y  N  N  10.848  -20.610  15.398  -6.515  -0.880   0.177  C14  V47  20  
V47  C15  C15  C  0  1  N  N  N   9.937  -19.860  16.343  -7.835  -0.945  -0.483  C15  V47  21  
V47  C16  C16  C  0  1  Y  N  N  10.377  -21.124  14.185  -5.500  -0.096  -0.367  C16  V47  22  
V47  O    O5   O  0  1  N  N  N  12.195  -23.742   8.460   1.133   0.533   0.186  O    V47  23  
V47  C17  C17  C  0  1  N  N  S  10.092  -23.791   7.586   1.401   2.796  -0.459  C17  V47  24  
V47  C18  C18  C  0  1  N  N  R  10.996  -23.208   6.515   2.792   2.128  -0.375  C18  V47  25  
V47  O5   O6   O  0  1  N  N  N  10.535  -21.895   6.101   3.706   2.961   0.340  O5   V47  26  
V47  N4   N3   N  0  1  Y  N  N  13.265  -23.965   6.231   3.361  -0.267  -0.134  N4   V47  27  
V47  N3   N4   N  0  1  Y  N  N  14.103  -25.453   4.786   3.979  -1.981  -1.335  N3   V47  28  
V47  C    C19  C  0  1  Y  N  N  15.996  -23.938   4.005   6.301  -2.229  -0.317  C    V47  29  
V47  N    N5   N  0  1  N  N  N  16.550  -24.758   3.114   6.733  -3.318  -1.054  N    V47  30  
V47  H1   H1   H  0  1  N  N  N   8.251  -23.549   8.158   1.986   4.720  -0.217  H1   V47  31  
V47  H2   H2   H  0  1  N  N  N  12.312  -25.890   5.947   2.053  -1.156  -1.621  H2   V47  32  
V47  H3   H3   H  0  1  N  N  N  12.751  -22.181   7.237   2.733   0.959   1.462  H3   V47  33  
V47  H4   H4   H  0  1  N  N  N  10.768  -22.349   9.016   0.348   2.104   1.319  H4   V47  34  
V47  H5   H5   H  0  1  N  N  N   9.670  -18.965  17.857  -9.663  -1.709  -0.421  H5   V47  35  
V47  H6   H6   H  0  1  N  N  N  16.456  -20.911   5.197   7.352  -0.213   2.042  H6   V47  36  
V47  H7   H7   H  0  1  N  N  N   9.421  -23.994  10.370  -1.324   2.753  -0.465  H7   V47  37  
V47  H8   H8   H  0  1  N  N  N  10.693  -25.224  10.060  -0.773   1.360  -1.427  H8   V47  38  
V47  H9   H9   H  0  1  N  N  N  11.394  -24.381  12.103  -1.404  -0.167   0.421  H9   V47  39  
V47  H10  H10  H  0  1  N  N  N  12.318  -23.344  10.965  -1.955   1.225   1.384  H10  V47  40  
V47  H11  H11  H  0  1  N  N  N  13.258  -22.417  12.979  -3.076  -0.731   1.926  H11  V47  41  
V47  H12  H12  H  0  1  N  N  N  14.092  -21.563  15.139  -4.878  -2.102   2.878  H12  V47  42  
V47  H13  H13  H  0  1  N  N  N  12.579  -20.335  16.641  -7.071  -2.206   1.776  H13  V47  43  
V47  H14  H14  H  0  1  N  N  N   9.339  -20.995  13.916  -5.675   0.466  -1.273  H14  V47  44  
V47  H15  H15  H  0  1  N  N  N  10.034  -24.884   7.477   1.093   2.913  -1.498  H15  V47  45  
V47  H16  H16  H  0  1  N  N  N  11.009  -23.888   5.651   3.172   1.912  -1.374  H16  V47  46  
V47  H17  H17  H  0  1  N  N  N   9.673  -21.971   5.710   3.905   3.797  -0.102  H17  V47  47  
V47  H18  H18  H  0  1  N  N  N  17.341  -24.311   2.695   7.619  -3.684  -0.904  H18  V47  48  
V47  H19  H19  H  0  1  N  N  N  16.845  -25.597   3.571   6.151  -3.715  -1.720  H19  V47  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V47  N    C    SING  N  N   1  
V47  C    N1   DOUB  Y  N   2  
V47  C    C3   SING  Y  N   3  
V47  N1   C1   SING  Y  N   4  
V47  C3   N3   SING  Y  N   5  
V47  C3   C2   DOUB  Y  N   6  
V47  N3   C4   DOUB  Y  N   7  
V47  C1   N2   DOUB  Y  N   8  
V47  C2   N2   SING  Y  N   9  
V47  C2   N4   SING  Y  N  10  
V47  C4   N4   SING  Y  N  11  
V47  O5   C18  SING  N  N  12  
V47  N4   C5   SING  N  N  13  
V47  C18  C5   SING  N  N  14  
V47  C18  C17  SING  N  N  15  
V47  C5   O    SING  N  N  16  
V47  O4   C17  SING  N  N  17  
V47  C17  C6   SING  N  N  18  
V47  O    C6   SING  N  N  19  
V47  C6   C7   SING  N  N  20  
V47  C7   C8   SING  N  N  21  
V47  C8   C9   SING  N  N  22  
V47  O1   C9   DOUB  N  N  23  
V47  C9   C10  SING  N  N  24  
V47  C10  C11  DOUB  Y  N  25  
V47  C10  C16  SING  Y  N  26  
V47  C11  C12  SING  Y  N  27  
V47  C16  C14  DOUB  Y  N  28  
V47  C12  C13  DOUB  Y  N  29  
V47  C14  C13  SING  Y  N  30  
V47  C14  C15  SING  N  N  31  
V47  O3   C15  DOUB  N  N  32  
V47  C15  O2   SING  N  N  33  
V47  O4   H1   SING  N  N  34  
V47  C4   H2   SING  N  N  35  
V47  C5   H3   SING  N  N  36  
V47  C6   H4   SING  N  N  37  
V47  O2   H5   SING  N  N  38  
V47  C1   H6   SING  N  N  39  
V47  C7   H7   SING  N  N  40  
V47  C7   H8   SING  N  N  41  
V47  C8   H9   SING  N  N  42  
V47  C8   H10  SING  N  N  43  
V47  C11  H11  SING  N  N  44  
V47  C12  H12  SING  N  N  45  
V47  C13  H13  SING  N  N  46  
V47  C16  H14  SING  N  N  47  
V47  C17  H15  SING  N  N  48  
V47  C18  H16  SING  N  N  49  
V47  O5   H17  SING  N  N  50  
V47  N    H18  SING  N  N  51  
V47  N    H19  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V47  SMILES            ACDLabs               12.01  "OC2C(CCC(=O)c1cccc(C(=O)O)c1)OC(C2O)n4cnc3c4ncnc3N"  
V47  InChI             InChI                 1.03   "InChI=1S/C19H19N5O6/c20-16-13-17(22-7-21-16)24(8-23-13)18-15(27)14(26)12(30-18)5-4-11(25)9-2-1-3-10(6-9)19(28)29/h1-3,6-8,12,14-15,18,26-27H,4-5H2,(H,28,29)(H2,20,21,22)/t12-,14-,15-,18-/m1/s1"  
V47  InChIKey          InChI                 1.03   JSTYUEOJPRFLHR-SCFUHWHPSA-N  
V47  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CCC(=O)c4cccc(c4)C(O)=O)[C@@H](O)[C@H]3O"  
V47  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CCC(=O)c4cccc(c4)C(O)=O)[CH](O)[CH]3O"  
V47  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)C(=O)O)C(=O)CC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"  
V47  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)C(=O)O)C(=O)CCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V47  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-[7-(3-carboxyphenyl)-5,6-dideoxy-beta-D-ribo-heptodialdo-1,4-furanosyl]-9H-purin-6-amine"  
V47  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propanoyl]benzoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V47  "Create component"  2020-06-23  RCSB  
V47  "Initial release"   2020-07-15  RCSB  
V47  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     V47
_pdbx_chem_comp_synonyms.name        Aminofutalosine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
