data_VO7
# 
_chem_comp.id                                    VO7 
_chem_comp.name                                  "N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-5-{[4-(1H-indol-3-yl)pyrimidin-2-yl]amino}-4-methoxyphenyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H31 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         AZ5104 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        485.581 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VO7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JXL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VO7 C19 C1  C 0 1 Y N N N N N -20.502 -17.832 -87.602 -1.016 0.584  -0.133 C19 VO7 1  
VO7 C20 C2  C 0 1 Y N N N N N -20.523 -17.936 -88.992 -0.496 -0.697 -0.241 C20 VO7 2  
VO7 C17 C3  C 0 1 N N N N N N -19.102 -18.503 -82.429 -2.227 5.261  1.479  C17 VO7 3  
VO7 C12 C4  C 0 1 N N N N N N -24.316 -20.339 -81.890 -7.660 -2.563 0.872  C12 VO7 4  
VO7 C16 C5  C 0 1 N N N N N N -20.175 -17.509 -82.950 -2.859 4.347  0.748  C16 VO7 5  
VO7 C15 C6  C 0 1 N N N N N N -20.276 -17.507 -84.450 -2.265 3.015  0.561  C15 VO7 6  
VO7 N14 N1  N 0 1 N N N N N N -21.127 -18.324 -85.214 -2.905 2.089  -0.179 N14 VO7 7  
VO7 C01 C7  C 0 1 N N N N N N -22.551 -19.765 -91.275 -1.751 -4.083 -0.894 C01 VO7 8  
VO7 C03 C8  C 0 1 Y N N N N N -21.451 -18.841 -89.487 -1.340 -1.771 -0.510 C03 VO7 9  
VO7 C04 C9  C 0 1 Y N N N N N -22.267 -19.552 -88.600 -2.700 -1.562 -0.671 C04 VO7 10 
VO7 C05 C10 C 0 1 Y N N N N N -22.263 -19.466 -87.201 -3.222 -0.281 -0.564 C05 VO7 11 
VO7 C07 C11 C 0 1 N N N N N N -24.176 -21.037 -87.285 -5.024 -0.409 -2.091 C07 VO7 12 
VO7 C08 C12 C 0 1 N N N N N N -23.321 -20.571 -85.054 -5.369 -0.825 0.269  C08 VO7 13 
VO7 C09 C13 C 0 1 N N N N N N -24.325 -19.676 -84.260 -6.832 -0.382 0.224  C09 VO7 14 
VO7 C11 C14 C 0 1 N N N N N N -24.298 -18.010 -82.430 -8.954 -0.580 1.375  C11 VO7 15 
VO7 C13 C15 C 0 1 Y N N N N N -21.306 -18.514 -86.656 -2.378 0.795  -0.294 C13 VO7 16 
VO7 C22 C16 C 0 1 Y N N N N N -18.908 -16.046 -89.739 1.785  0.048  -0.503 C22 VO7 17 
VO7 C24 C17 C 0 1 Y N N N N N -18.090 -14.214 -88.496 3.967  0.787  -0.638 C24 VO7 18 
VO7 C25 C18 C 0 1 Y N N N N N -17.960 -13.505 -87.226 5.405  0.600  -0.346 C25 VO7 19 
VO7 C26 C19 C 0 1 Y N N N N N -18.381 -14.021 -86.035 6.417  1.439  -0.683 C26 VO7 20 
VO7 C28 C20 C 0 1 Y N N N N N -17.464 -12.068 -85.474 7.396  -0.268 0.403  C28 VO7 21 
VO7 C29 C21 C 0 1 Y N N N N N -17.346 -12.249 -86.864 6.016  -0.531 0.373  C29 VO7 22 
VO7 C30 C22 C 0 1 Y N N N N N -16.720 -11.200 -87.530 5.514  -1.689 0.963  C30 VO7 23 
VO7 C31 C23 C 0 1 Y N N N N N -16.244 -10.102 -86.898 6.368  -2.567 1.570  C31 VO7 24 
VO7 C32 C24 C 0 1 Y N N N N N -16.384 -9.968  -85.531 7.732  -2.313 1.604  C32 VO7 25 
VO7 C33 C25 C 0 1 Y N N N N N -16.989 -10.940 -84.815 8.248  -1.174 1.027  C33 VO7 26 
VO7 C34 C26 C 0 1 Y N N N N N -17.427 -13.790 -89.632 3.525  1.917  -1.335 C34 VO7 27 
VO7 C35 C27 C 0 1 Y N N N N N -17.548 -14.559 -90.746 2.173  2.043  -1.595 C35 VO7 28 
VO7 N06 N2  N 0 1 N N N N N N -23.218 -20.316 -86.485 -4.598 -0.069 -0.727 N06 VO7 29 
VO7 N10 N3  N 0 1 N N N N N N -23.840 -19.335 -82.869 -7.603 -1.138 1.220  N10 VO7 30 
VO7 N21 N4  N 0 1 N N N N N N -19.651 -17.201 -89.898 0.881  -0.910 -0.078 N21 VO7 31 
VO7 N23 N5  N 0 1 Y N N N N N -18.816 -15.334 -88.543 3.072  -0.118 -0.242 N23 VO7 32 
VO7 N27 N6  N 0 1 Y N N N N N -18.098 -13.164 -84.972 7.602  0.931  -0.245 N27 VO7 33 
VO7 N36 N7  N 0 1 Y N N N N N -18.268 -15.641 -90.859 1.340  1.106  -1.166 N36 VO7 34 
VO7 O02 O1  O 0 1 N N N N N N -21.539 -18.992 -90.804 -0.828 -3.028 -0.616 O02 VO7 35 
VO7 O18 O2  O 0 1 N N N N N N -19.474 -16.791 -84.982 -1.195 2.749  1.075  O18 VO7 36 
VO7 H1  H1  H 0 1 N N N N N N -19.779 -17.142 -87.193 -0.362 1.417  0.080  H1  VO7 37 
VO7 H2  H2  H 0 1 N N N N N N -18.530 -19.095 -83.128 -1.277 5.025  1.935  H2  VO7 38 
VO7 H3  H3  H 0 1 N N N N N N -18.928 -18.602 -81.368 -2.664 6.240  1.616  H3  VO7 39 
VO7 H5  H5  H 0 1 N N N N N N -23.953 -20.074 -80.886 -6.648 -2.968 0.832  H5  VO7 40 
VO7 H6  H6  H 0 1 N N N N N N -25.416 -20.358 -81.889 -8.236 -3.100 1.625  H6  VO7 41 
VO7 H7  H7  H 0 1 N N N N N N -23.933 -21.332 -82.168 -8.136 -2.681 -0.102 H7  VO7 42 
VO7 H8  H8  H 0 1 N N N N N N -20.781 -16.888 -82.307 -3.809 4.583  0.291  H8  VO7 43 
VO7 H10 H10 H 0 1 N N N N N N -21.735 -18.892 -84.660 -3.732 2.318  -0.633 H10 VO7 44 
VO7 H11 H11 H 0 1 N N N N N N -22.504 -19.803 -92.373 -2.493 -4.135 -0.098 H11 VO7 45 
VO7 H12 H12 H 0 1 N N N N N N -22.454 -20.783 -90.869 -2.250 -3.888 -1.844 H12 VO7 46 
VO7 H13 H13 H 0 1 N N N N N N -23.515 -19.336 -90.964 -1.214 -5.029 -0.953 H13 VO7 47 
VO7 H14 H14 H 0 1 N N N N N N -22.974 -20.239 -89.040 -3.354 -2.396 -0.880 H14 VO7 48 
VO7 H15 H15 H 0 1 N N N N N N -24.828 -21.632 -86.629 -4.806 -1.458 -2.289 H15 VO7 49 
VO7 H16 H16 H 0 1 N N N N N N -24.786 -20.323 -87.859 -6.096 -0.235 -2.191 H16 VO7 50 
VO7 H17 H17 H 0 1 N N N N N N -23.645 -21.706 -87.978 -4.487 0.215  -2.806 H17 VO7 51 
VO7 H18 H18 H 0 1 N N N N N N -23.630 -21.619 -84.922 -4.962 -0.637 1.263  H18 VO7 52 
VO7 H19 H19 H 0 1 N N N N N N -22.323 -20.425 -84.615 -5.305 -1.890 0.046  H19 VO7 53 
VO7 H20 H20 H 0 1 N N N N N N -24.477 -18.740 -84.818 -6.896 0.683  0.447  H20 VO7 54 
VO7 H21 H21 H 0 1 N N N N N N -25.282 -20.212 -84.176 -7.239 -0.570 -0.769 H21 VO7 55 
VO7 H22 H22 H 0 1 N N N N N N -23.921 -17.808 -81.416 -9.477 -0.626 0.420  H22 VO7 56 
VO7 H23 H23 H 0 1 N N N N N N -23.918 -17.243 -83.121 -9.503 -1.158 2.118  H23 VO7 57 
VO7 H24 H24 H 0 1 N N N N N N -25.398 -17.986 -82.424 -8.883 0.458  1.701  H24 VO7 58 
VO7 H25 H25 H 0 1 N N N N N N -18.873 -14.976 -85.929 6.300  2.370  -1.219 H25 VO7 59 
VO7 H26 H26 H 0 1 N N N N N N -16.609 -11.265 -88.602 4.453  -1.892 0.941  H26 VO7 60 
VO7 H27 H27 H 0 1 N N N N N N -15.752 -9.326  -87.466 5.978  -3.464 2.028  H27 VO7 61 
VO7 H28 H28 H 0 1 N N N N N N -16.009 -9.085  -85.034 8.394  -3.016 2.087  H28 VO7 62 
VO7 H29 H29 H 0 1 N N N N N N -17.102 -10.842 -83.745 9.311  -0.984 1.060  H29 VO7 63 
VO7 H30 H30 H 0 1 N N N N N N -16.837 -12.885 -89.634 4.224  2.669  -1.670 H30 VO7 64 
VO7 H31 H31 H 0 1 N N N N N N -16.996 -14.245 -91.620 1.798  2.903  -2.130 H31 VO7 65 
VO7 H33 H33 H 0 1 N N N N N N -19.575 -17.609 -90.808 1.200  -1.730 0.332  H33 VO7 66 
VO7 H34 H34 H 0 1 N N N N N N -18.321 -13.326 -84.011 8.466  1.354  -0.369 H34 VO7 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VO7 C01 O02 SING N N 1  
VO7 N36 C35 DOUB Y N 2  
VO7 N36 C22 SING Y N 3  
VO7 O02 C03 SING N N 4  
VO7 C35 C34 SING Y N 5  
VO7 N21 C22 SING N N 6  
VO7 N21 C20 SING N N 7  
VO7 C22 N23 DOUB Y N 8  
VO7 C34 C24 DOUB Y N 9  
VO7 C03 C20 DOUB Y N 10 
VO7 C03 C04 SING Y N 11 
VO7 C20 C19 SING Y N 12 
VO7 C04 C05 DOUB Y N 13 
VO7 N23 C24 SING Y N 14 
VO7 C24 C25 SING N N 15 
VO7 C19 C13 DOUB Y N 16 
VO7 C30 C31 DOUB Y N 17 
VO7 C30 C29 SING Y N 18 
VO7 C07 N06 SING N N 19 
VO7 C25 C29 SING Y N 20 
VO7 C25 C26 DOUB Y N 21 
VO7 C05 C13 SING Y N 22 
VO7 C05 N06 SING N N 23 
VO7 C31 C32 SING Y N 24 
VO7 C29 C28 DOUB Y N 25 
VO7 C13 N14 SING N N 26 
VO7 N06 C08 SING N N 27 
VO7 C26 N27 SING Y N 28 
VO7 C32 C33 DOUB Y N 29 
VO7 C28 N27 SING Y N 30 
VO7 C28 C33 SING Y N 31 
VO7 N14 C15 SING N N 32 
VO7 C08 C09 SING N N 33 
VO7 O18 C15 DOUB N N 34 
VO7 C15 C16 SING N N 35 
VO7 C09 N10 SING N N 36 
VO7 C16 C17 DOUB N N 37 
VO7 N10 C11 SING N N 38 
VO7 N10 C12 SING N N 39 
VO7 C19 H1  SING N N 40 
VO7 C17 H2  SING N N 41 
VO7 C17 H3  SING N N 42 
VO7 C12 H5  SING N N 43 
VO7 C12 H6  SING N N 44 
VO7 C12 H7  SING N N 45 
VO7 C16 H8  SING N N 46 
VO7 N14 H10 SING N N 47 
VO7 C01 H11 SING N N 48 
VO7 C01 H12 SING N N 49 
VO7 C01 H13 SING N N 50 
VO7 C04 H14 SING N N 51 
VO7 C07 H15 SING N N 52 
VO7 C07 H16 SING N N 53 
VO7 C07 H17 SING N N 54 
VO7 C08 H18 SING N N 55 
VO7 C08 H19 SING N N 56 
VO7 C09 H20 SING N N 57 
VO7 C09 H21 SING N N 58 
VO7 C11 H22 SING N N 59 
VO7 C11 H23 SING N N 60 
VO7 C11 H24 SING N N 61 
VO7 C26 H25 SING N N 62 
VO7 C30 H26 SING N N 63 
VO7 C31 H27 SING N N 64 
VO7 C32 H28 SING N N 65 
VO7 C33 H29 SING N N 66 
VO7 C34 H30 SING N N 67 
VO7 C35 H31 SING N N 68 
VO7 N21 H33 SING N N 69 
VO7 N27 H34 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VO7 SMILES           ACDLabs              12.01 "c1c(NC([C@H]=C)=O)c(cc(c1Nc4nc(c2c3c(nc2)cccc3)ccn4)OC)N(C)CCN(C)C"                                                                                                                        
VO7 InChI            InChI                1.03  "InChI=1S/C27H31N7O2/c1-6-26(35)30-22-15-23(25(36-5)16-24(22)34(4)14-13-33(2)3)32-27-28-12-11-21(31-27)19-17-29-20-10-8-7-9-18(19)20/h6-12,15-17,29H,1,13-14H2,2-5H3,(H,30,35)(H,28,31,32)" 
VO7 InChIKey         InChI                1.03  IQNVEOMHJHBNHC-UHFFFAOYSA-N                                                                                                                                                                 
VO7 SMILES_CANONICAL CACTVS               3.385 "COc1cc(N(C)CCN(C)C)c(NC(=O)C=C)cc1Nc2nccc(n2)c3c[nH]c4ccccc34"                                                                                                                             
VO7 SMILES           CACTVS               3.385 "COc1cc(N(C)CCN(C)C)c(NC(=O)C=C)cc1Nc2nccc(n2)c3c[nH]c4ccccc34"                                                                                                                             
VO7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCN(C)c1cc(c(cc1NC(=O)C=C)Nc2nccc(n2)c3c[nH]c4c3cccc4)OC"                                                                                                                             
VO7 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCN(C)c1cc(c(cc1NC(=O)C=C)Nc2nccc(n2)c3c[nH]c4c3cccc4)OC"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VO7 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-5-{[4-(1H-indol-3-yl)pyrimidin-2-yl]amino}-4-methoxyphenyl)prop-2-enamide"      
VO7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-[2-(dimethylamino)ethyl-methyl-amino]-5-[[4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]-4-methoxy-phenyl]prop-2-enamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VO7 
_pdbx_chem_comp_synonyms.name         AZ5104 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VO7 "Create component" 2020-08-31 RCSB 
VO7 "Modify synonyms"  2021-03-01 PDBE 
VO7 "Initial release"  2021-09-08 RCSB 
VO7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VO7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C17 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
