data_VP7
#

_chem_comp.id                                   VP7
_chem_comp.name                                 "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H20 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-31
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       332.399
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VP7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JXX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VP7  N1   N1   N  0  1  Y  N  N  174.643  19.275  47.435  -3.774   2.894   0.183  N1   VP7   1  
VP7  N3   N2   N  0  1  Y  N  N  176.879  19.483  46.618  -1.972   1.729  -0.695  N3   VP7   2  
VP7  C4   C1   C  0  1  Y  N  N  175.665  18.867  46.658  -2.694   2.838  -0.583  C4   VP7   3  
VP7  C5   C2   C  0  1  Y  N  N  177.087  20.568  47.393  -2.330   0.643  -0.028  C5   VP7   4  
VP7  C6   C3   C  0  1  Y  N  N  178.420  21.189  47.323  -1.676  -0.669  -0.215  C6   VP7   5  
VP7  C7   C4   C  0  1  Y  N  N  179.512  20.568  46.591  -0.280  -1.054  -0.226  C7   VP7   6  
VP7  C8   C5   C  0  1  Y  N  N  179.685  19.376  45.876   0.907  -0.341  -0.076  C8   VP7   7  
VP7  C10  C6   C  0  1  N  N  N  181.174  17.941  44.514   3.346  -0.399   0.007  C10  VP7   8  
VP7  C13  C7   C  0  1  N  N  N  181.000  15.952  41.626   5.410   2.349   0.491  C13  VP7   9  
VP7  C15  C8   C  0  1  Y  N  N  182.014  19.980  45.498   2.086  -2.459  -0.345  C15  VP7  10  
VP7  C17  C9   C  0  1  Y  N  N  180.631  21.409  46.767  -0.276  -2.459  -0.435  C17  VP7  11  
VP7  C20  C10  C  0  1  N  N  N  176.758  23.480  48.589  -4.532  -1.598   0.907  C20  VP7  12  
VP7  C1   C11  C  0  1  N  N  N  176.196  22.190  49.167  -3.754  -0.515   1.665  C1   VP7  13  
VP7  C11  C12  C  0  1  N  N  N  181.355  16.992  43.818   4.373   0.157   0.128  C11  VP7  14  
VP7  C12  C13  C  0  1  N  N  N  181.599  15.791  43.013   5.661   0.854   0.279  C12  VP7  15  
VP7  C14  C14  C  0  1  N  N  N  181.045  14.558  43.703   6.502   0.652  -0.983  C14  VP7  16  
VP7  C16  C15  C  0  1  Y  N  N  181.874  21.147  46.204   0.922  -3.169  -0.495  C16  VP7  17  
VP7  C18  C16  C  0  1  Y  N  N  178.911  22.374  47.842  -2.415  -1.796  -0.417  C18  VP7  18  
VP7  C19  C17  C  0  1  N  N  N  178.267  23.433  48.677  -3.916  -1.793  -0.482  C19  VP7  19  
VP7  C2   C18  C  0  1  Y  N  N  176.048  21.017  48.227  -3.436   0.686   0.832  C2   VP7  20  
VP7  C3   C19  C  0  1  Y  N  N  174.851  20.336  48.209  -4.170   1.849   0.898  C3   VP7  21  
VP7  C9   C20  C  0  1  Y  N  N  180.937  19.109  45.307   2.093  -1.077  -0.141  C9   VP7  22  
VP7  N2   N3   N  0  1  N  N  N  175.467  17.779  45.903  -2.308   3.965  -1.287  N2   VP7  23  
VP7  N4   N4   N  0  1  Y  N  N  180.233  22.482  47.516  -1.578  -2.865  -0.544  N4   VP7  24  
VP7  O1   O1   O  0  1  N  N  N  183.021  15.620  42.867   6.359   0.324   1.407  O1   VP7  25  
VP7  H1   H1   H  0  1  N  N  N  178.869  18.677  45.766   0.911   0.728   0.080  H1   VP7  26  
VP7  H2   H2   H  0  1  N  N  N  179.911  16.085  41.709   4.877   2.753  -0.370  H2   VP7  27  
VP7  H3   H3   H  0  1  N  N  N  181.440  16.833  41.137   4.810   2.493   1.390  H3   VP7  28  
VP7  H4   H4   H  0  1  N  N  N  181.215  15.055  41.027   6.363   2.865   0.603  H4   VP7  29  
VP7  H5   H5   H  0  1  N  N  N  182.977  19.728  45.080   3.028  -2.985  -0.387  H5   VP7  30  
VP7  H6   H6   H  0  1  N  N  N  176.380  24.339  49.163  -4.482  -2.536   1.461  H6   VP7  31  
VP7  H7   H7   H  0  1  N  N  N  176.451  23.579  47.537  -5.573  -1.292   0.803  H7   VP7  32  
VP7  H8   H8   H  0  1  N  N  N  175.199  22.416  49.573  -4.345  -0.198   2.524  H8   VP7  33  
VP7  H9   H9   H  0  1  N  N  N  176.862  21.876  49.985  -2.819  -0.945   2.026  H9   VP7  34  
VP7  H10  H10  H  0  1  N  N  N  181.493  14.464  44.703   7.455   1.168  -0.871  H10  VP7  35  
VP7  H11  H11  H  0  1  N  N  N  179.953  14.651  43.798   6.680  -0.412  -1.134  H11  VP7  36  
VP7  H12  H12  H  0  1  N  N  N  181.287  13.665  43.108   5.968   1.057  -1.843  H12  VP7  37  
VP7  H13  H13  H  0  1  N  N  N  182.698  21.836  46.318   0.934  -4.238  -0.654  H13  VP7  38  
VP7  H14  H14  H  0  1  N  N  N  178.543  23.256  49.727  -4.258  -2.743  -0.894  H14  VP7  39  
VP7  H15  H15  H  0  1  N  N  N  178.659  24.409  48.354  -4.244  -0.984  -1.135  H15  VP7  40  
VP7  H16  H16  H  0  1  N  N  N  174.050  20.677  48.848  -5.051   1.909   1.520  H16  VP7  41  
VP7  H17  H17  H  0  1  N  N  N  176.300  17.572  45.390  -1.520   3.938  -1.852  H17  VP7  42  
VP7  H18  H18  H  0  1  N  N  N  175.236  17.003  46.490  -2.826   4.782  -1.215  H18  VP7  43  
VP7  H19  H19  H  0  1  N  N  N  180.827  23.240  47.787  -1.864  -3.780  -0.691  H19  VP7  44  
VP7  H20  H20  H  0  1  N  N  N  183.418  15.517  43.724   7.219   0.738   1.568  H20  VP7  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VP7  C13  C12  SING  N  N   1  
VP7  O1   C12  SING  N  N   2  
VP7  C12  C14  SING  N  N   3  
VP7  C12  C11  SING  N  N   4  
VP7  C11  C10  TRIP  N  N   5  
VP7  C10  C9   SING  N  N   6  
VP7  C9   C15  DOUB  Y  N   7  
VP7  C9   C8   SING  Y  N   8  
VP7  C15  C16  SING  Y  N   9  
VP7  C8   C7   DOUB  Y  N  10  
VP7  N2   C4   SING  N  N  11  
VP7  C16  C17  DOUB  Y  N  12  
VP7  C7   C17  SING  Y  N  13  
VP7  C7   C6   SING  Y  N  14  
VP7  N3   C4   DOUB  Y  N  15  
VP7  N3   C5   SING  Y  N  16  
VP7  C4   N1   SING  Y  N  17  
VP7  C17  N4   SING  Y  N  18  
VP7  C6   C5   SING  N  N  19  
VP7  C6   C18  DOUB  Y  N  20  
VP7  C5   C2   DOUB  Y  N  21  
VP7  N1   C3   DOUB  Y  N  22  
VP7  N4   C18  SING  Y  N  23  
VP7  C18  C19  SING  N  N  24  
VP7  C3   C2   SING  Y  N  25  
VP7  C2   C1   SING  N  N  26  
VP7  C20  C19  SING  N  N  27  
VP7  C20  C1   SING  N  N  28  
VP7  C8   H1   SING  N  N  29  
VP7  C13  H2   SING  N  N  30  
VP7  C13  H3   SING  N  N  31  
VP7  C13  H4   SING  N  N  32  
VP7  C15  H5   SING  N  N  33  
VP7  C20  H6   SING  N  N  34  
VP7  C20  H7   SING  N  N  35  
VP7  C1   H8   SING  N  N  36  
VP7  C1   H9   SING  N  N  37  
VP7  C14  H10  SING  N  N  38  
VP7  C14  H11  SING  N  N  39  
VP7  C14  H12  SING  N  N  40  
VP7  C16  H13  SING  N  N  41  
VP7  C19  H14  SING  N  N  42  
VP7  C19  H15  SING  N  N  43  
VP7  C3   H16  SING  N  N  44  
VP7  N2   H17  SING  N  N  45  
VP7  N2   H18  SING  N  N  46  
VP7  N4   H19  SING  N  N  47  
VP7  O1   H20  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VP7  SMILES            ACDLabs               12.01  "n1cc2c(nc1N)c3c(CCC2)nc4c3cc(C#CC(C)(C)O)cc4"  
VP7  InChI             InChI                 1.03   "InChI=1S/C20H20N4O/c1-20(2,25)9-8-12-6-7-15-14(10-12)17-16(23-15)5-3-4-13-11-22-19(21)24-18(13)17/h6-7,10-11,23,25H,3-5H2,1-2H3,(H2,21,22,24)"  
VP7  InChIKey          InChI                 1.03   DGLFSNZWRYADFC-UHFFFAOYSA-N  
VP7  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1"  
VP7  SMILES            CACTVS                3.385  "CC(C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1"  
VP7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O"  
VP7  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O"  
#
_pdbx_chem_comp_identifier.comp_id          VP7
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VP7  "Create component"  2020-08-31  RCSB  
VP7  "Initial release"   2021-05-19  RCSB  
##
