data_X87
# 
_chem_comp.id                                    X87 
_chem_comp.name                                  "4-[(3-aminopropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H20 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-03-23 
_chem_comp.pdbx_modified_date                    2012-08-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        344.368 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X87 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3R73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X87 N01  N01  N 0  1 N N N 63.820 45.897 -12.328 1.785  -0.325 0.051  N01  X87 1  
X87 N02  N02  N 0  1 N N N 66.824 45.613 -15.117 1.023  -4.443 0.045  N02  X87 2  
X87 N03  N03  N 0  1 Y N N 61.933 47.287 -8.120  5.610  1.519  -1.145 N03  X87 3  
X87 N04  N04  N 0  1 N N N 66.459 43.678 -9.075  -2.936 0.601  0.068  N04  X87 4  
X87 N05  N05  N 0  1 N N N 66.293 42.099 -4.943  -4.949 5.061  -0.003 N05  X87 5  
X87 N06  N06  N 1  1 N N N 68.646 43.827 -10.767 -3.562 -2.151 -0.021 N06  X87 6  
X87 C07  C07  C 0  1 Y N N 67.364 44.926 -12.400 -1.138 -2.585 -0.028 C07  X87 7  
X87 C08  C08  C 0  1 Y N N 66.112 45.474 -12.833 0.190  -2.147 -0.011 C08  X87 8  
X87 C09  C09  C 0  1 Y N N 64.973 45.400 -11.955 0.470  -0.770 0.033  C09  X87 9  
X87 C10  C10  C 0  1 Y N N 65.123 44.774 -10.669 -0.575 0.140  0.059  C10  X87 10 
X87 C11  C11  C 0  1 Y N N 66.364 44.231 -10.242 -1.888 -0.312 0.042  C11  X87 11 
X87 C12  C12  C 0  1 Y N N 67.505 44.305 -11.115 -2.159 -1.679 -0.002 C12  X87 12 
X87 C13  C13  C 0  1 N N N 66.031 46.061 -14.092 1.290  -3.124 -0.039 C13  X87 13 
X87 C14  C14  C 0  1 N N N 62.547 45.732 -11.562 2.075  1.108  -0.049 C14  X87 14 
X87 C15  C15  C 0  1 Y N N 62.425 46.771 -10.465 3.566  1.323  -0.007 C15  X87 15 
X87 C16  C16  C 0  1 Y N N 62.058 46.391 -9.159  4.306  1.331  -1.174 C16  X87 16 
X87 C17  C17  C 0  1 Y N N 62.185 48.620 -8.388  6.259  1.706  -0.012 C17  X87 17 
X87 C18  C18  C 0  1 Y N N 62.558 49.093 -9.659  5.586  1.711  1.195  C18  X87 18 
X87 C19  C19  C 0  1 Y N N 62.677 48.148 -10.709 4.213  1.516  1.204  C19  X87 19 
X87 C20  C20  C 0  1 N N N 65.383 42.823 -8.513  -2.658 2.037  -0.015 C20  X87 20 
X87 C21  C21  C 0  1 N N N 65.346 42.980 -6.997  -3.975 2.815  0.036  C21  X87 21 
X87 C22  C22  C 0  1 N N N 66.128 41.840 -6.351  -3.685 4.315  -0.051 C22  X87 22 
X87 O23  O23  O 0  1 N N N 65.253 46.962 -14.312 2.441  -2.742 -0.136 O23  X87 23 
X87 O24  O24  O 0  1 N N N 68.731 42.789 -9.957  -3.874 -3.158 0.588  O24  X87 24 
X87 O25  O25  O -1 1 N N N 69.760 44.366 -11.223 -4.405 -1.531 -0.644 O25  X87 25 
X87 HN01 HN01 H 0  0 N N N 63.968 46.885 -12.368 2.512  -0.962 0.133  HN01 X87 26 
X87 HN02 HN02 H 0  0 N N N 66.752 46.030 -16.023 0.105  -4.747 0.122  HN02 X87 27 
X87 HN0A HN0A H 0  0 N N N 67.474 44.870 -14.958 1.748  -5.086 0.027  HN0A X87 28 
X87 HN04 HN04 H 0  0 N N N 67.267 43.091 -9.124  -3.851 0.287  0.142  HN04 X87 29 
X87 HN05 HN05 H 0  0 N N N 66.806 41.350 -4.524  -5.475 4.828  0.826  HN05 X87 30 
X87 HN0B HN0B H 0  0 N N N 66.793 42.956 -4.818  -4.784 6.055  -0.059 HN0B X87 31 
X87 H07  H07  H 0  1 N N N 68.220 44.982 -13.056 -1.357 -3.642 -0.067 H07  X87 32 
X87 H10  H10  H 0  1 N N N 64.269 44.715 -10.010 -0.368 1.200  0.094  H10  X87 33 
X87 H14  H14  H 0  1 N N N 61.699 45.844 -12.254 1.679  1.494  -0.988 H14  X87 34 
X87 H14A H14A H 0  0 N N N 62.533 44.731 -11.107 1.608  1.632  0.785  H14A X87 35 
X87 H16  H16  H 0  1 N N N 61.865 45.347 -8.963  3.809  1.181  -2.122 H16  X87 36 
X87 H17  H17  H 0  1 N N N 62.091 49.333 -7.582  7.328  1.856  -0.027 H17  X87 37 
X87 H18  H18  H 0  1 N N N 62.748 50.142 -9.830  6.122  1.864  2.120  H18  X87 38 
X87 H19  H19  H 0  1 N N N 62.960 48.476 -11.698 3.661  1.516  2.132  H19  X87 39 
X87 H20  H20  H 0  1 N N N 64.415 43.128 -8.936  -2.028 2.335  0.823  H20  X87 40 
X87 H20A H20A H 0  0 N N N 65.581 41.771 -8.768  -2.144 2.254  -0.951 H20A X87 41 
X87 H21  H21  H 0  1 N N N 65.800 43.942 -6.716  -4.605 2.517  -0.803 H21  X87 42 
X87 H21A H21A H 0  0 N N N 64.302 42.952 -6.650  -4.489 2.598  0.972  H21A X87 43 
X87 H22  H22  H 0  1 N N N 67.117 41.761 -6.826  -3.171 4.531  -0.987 H22  X87 44 
X87 H22A H22A H 0  0 N N N 65.578 40.897 -6.487  -3.055 4.612  0.787  H22A X87 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X87 N01 C09  SING N N 1  
X87 N01 C14  SING N N 2  
X87 N01 HN01 SING N N 3  
X87 N02 C13  SING N N 4  
X87 N02 HN02 SING N N 5  
X87 N02 HN0A SING N N 6  
X87 N03 C16  DOUB Y N 7  
X87 N03 C17  SING Y N 8  
X87 N04 C11  SING N N 9  
X87 N04 C20  SING N N 10 
X87 N04 HN04 SING N N 11 
X87 N05 C22  SING N N 12 
X87 N05 HN05 SING N N 13 
X87 N05 HN0B SING N N 14 
X87 N06 C12  SING N N 15 
X87 N06 O24  DOUB N N 16 
X87 N06 O25  SING N N 17 
X87 C07 C08  DOUB Y N 18 
X87 C07 C12  SING Y N 19 
X87 C07 H07  SING N N 20 
X87 C08 C09  SING Y N 21 
X87 C08 C13  SING N N 22 
X87 C09 C10  DOUB Y N 23 
X87 C10 C11  SING Y N 24 
X87 C10 H10  SING N N 25 
X87 C11 C12  DOUB Y N 26 
X87 C13 O23  DOUB N N 27 
X87 C14 C15  SING N N 28 
X87 C14 H14  SING N N 29 
X87 C14 H14A SING N N 30 
X87 C15 C16  SING Y N 31 
X87 C15 C19  DOUB Y N 32 
X87 C16 H16  SING N N 33 
X87 C17 C18  DOUB Y N 34 
X87 C17 H17  SING N N 35 
X87 C18 C19  SING Y N 36 
X87 C18 H18  SING N N 37 
X87 C19 H19  SING N N 38 
X87 C20 C21  SING N N 39 
X87 C20 H20  SING N N 40 
X87 C20 H20A SING N N 41 
X87 C21 C22  SING N N 42 
X87 C21 H21  SING N N 43 
X87 C21 H21A SING N N 44 
X87 C22 H22  SING N N 45 
X87 C22 H22A SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X87 SMILES           ACDLabs              12.01 "[O-][N+](=O)c2c(NCCCN)cc(NCc1cccnc1)c(C(=O)N)c2"                                                                                         
X87 SMILES_CANONICAL CACTVS               3.370 "NCCCNc1cc(NCc2cccnc2)c(cc1[N+]([O-])=O)C(N)=O"                                                                                           
X87 SMILES           CACTVS               3.370 "NCCCNc1cc(NCc2cccnc2)c(cc1[N+]([O-])=O)C(N)=O"                                                                                           
X87 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(cnc1)CNc2cc(c(cc2C(=O)N)[N+](=O)[O-])NCCCN"                                                                                         
X87 SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(cnc1)CNc2cc(c(cc2C(=O)N)[N+](=O)[O-])NCCCN"                                                                                         
X87 InChI            InChI                1.03  "InChI=1S/C16H20N6O3/c17-4-2-6-20-14-8-13(21-10-11-3-1-5-19-9-11)12(16(18)23)7-15(14)22(24)25/h1,3,5,7-9,20-21H,2,4,6,10,17H2,(H2,18,23)" 
X87 InChIKey         InChI                1.03  RAPSXQPDFJOVLN-UHFFFAOYSA-N                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X87 "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(3-aminopropyl)amino]-5-nitro-2-[(pyridin-3-ylmethyl)amino]benzamide" 
X87 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "4-(3-azanylpropylamino)-5-nitro-2-(pyridin-3-ylmethylamino)benzamide"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X87 "Create component"  2011-03-23 RCSB 
X87 "Modify descriptor" 2011-06-04 RCSB 
# 
