data_XB7
#

_chem_comp.id                                   XB7
_chem_comp.name                                 "1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H31 F N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-08
_chem_comp.pdbx_modified_date                   2021-02-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       458.570
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XB7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KXT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XB7  C1   C1   C  0  1  N  N  N   -3.601  -15.151  -34.319  -10.718  -0.766  -1.415  C1   XB7   1  
XB7  C10  C2   C  0  1  N  N  N  -11.319  -12.529  -26.198    0.305   0.803   0.688  C10  XB7   2  
XB7  C11  C3   C  0  1  N  N  N  -11.369  -11.838  -27.532   -0.080   0.117  -0.625  C11  XB7   3  
XB7  C12  C4   C  0  1  N  N  N  -10.613  -12.639  -28.567   -1.532   0.460  -0.967  C12  XB7   4  
XB7  C13  C5   C  0  1  Y  N  N  -13.360  -12.056  -24.856    2.741   1.134   0.533  C13  XB7   5  
XB7  C14  C6   C  0  1  Y  N  N  -15.312  -12.947  -24.724    3.886   2.610  -0.594  C14  XB7   6  
XB7  C15  C7   C  0  1  Y  N  N  -16.441  -13.738  -24.854    4.353   3.646  -1.406  C15  XB7   7  
XB7  C16  C8   C  0  1  Y  N  N  -17.557  -13.382  -24.133    5.708   3.863  -1.527  C16  XB7   8  
XB7  C17  C9   C  0  1  Y  N  N  -17.566  -12.266  -23.297    6.612   3.059  -0.849  C17  XB7   9  
XB7  C18  C10  C  0  1  Y  N  N  -16.454  -11.465  -23.154    6.167   2.032  -0.043  C18  XB7  10  
XB7  C19  C11  C  0  1  Y  N  N  -15.336  -11.831  -23.882    4.807   1.799   0.091  C19  XB7  11  
XB7  C2   C12  C  0  1  Y  N  N   -4.846  -15.361  -32.281   -8.818   0.045  -0.239  C2   XB7  12  
XB7  C20  C13  C  0  1  N  N  N  -13.621  -10.056  -23.287    4.574  -0.177   1.675  C20  XB7  13  
XB7  C21  C14  C  0  1  Y  N  N  -13.726   -8.856  -24.199    4.802  -1.431   0.871  C21  XB7  14  
XB7  C22  C15  C  0  1  Y  N  N  -14.927   -8.533  -24.796    6.026  -1.651   0.267  C22  XB7  15  
XB7  C23  C16  C  0  1  Y  N  N  -15.042   -7.443  -25.643    6.236  -2.800  -0.471  C23  XB7  16  
XB7  C24  C17  C  0  1  Y  N  N  -13.926   -6.700  -25.885    5.221  -3.732  -0.605  C24  XB7  17  
XB7  C25  C18  C  0  1  Y  N  N  -12.712   -6.987  -25.328    3.996  -3.511   0.001  C25  XB7  18  
XB7  C26  C19  C  0  1  Y  N  N  -12.622   -8.079  -24.480    3.789  -2.363   0.742  C26  XB7  19  
XB7  C27  C20  C  0  1  Y  N  N   -5.878  -15.481  -30.122   -6.852   0.782   0.918  C27  XB7  20  
XB7  C28  C21  C  0  1  Y  N  N   -5.197  -16.096  -31.160   -8.181   0.962   0.585  C28  XB7  21  
XB7  C3   C22  C  0  1  Y  N  N   -5.177  -14.015  -32.352   -8.120  -1.049  -0.726  C3   XB7  22  
XB7  C4   C23  C  0  1  Y  N  N   -5.859  -13.421  -31.302   -6.791  -1.224  -0.390  C4   XB7  23  
XB7  C5   C24  C  0  1  Y  N  N   -6.220  -14.139  -30.171   -6.158  -0.310   0.431  C5   XB7  24  
XB7  C6   C25  C  0  1  N  N  N   -6.958  -13.478  -29.030   -4.709  -0.503   0.796  C6   XB7  25  
XB7  C7   C26  C  0  1  N  N  N   -8.466  -13.520  -29.229   -3.825   0.198  -0.238  C7   XB7  26  
XB7  C8   C27  C  0  1  N  N  N   -9.143  -13.536  -26.895   -2.091   0.690   1.379  C8   XB7  27  
XB7  C9   C28  C  0  1  N  N  N   -9.896  -12.795  -25.791   -0.657   0.354   1.792  C9   XB7  28  
XB7  F1   F1   F  0  1  N  N  N  -14.024   -5.627  -26.722    5.426  -4.856  -1.326  F1   XB7  29  
XB7  N1   N1   N  0  1  N  N  N   -9.216  -12.820  -28.178   -2.412   0.010   0.118  N1   XB7  30  
XB7  N2   N2   N  0  1  N  N  N  -12.053  -11.776  -25.189    1.675   0.431   1.052  N2   XB7  31  
XB7  N3   N3   N  0  1  Y  N  N  -14.061  -13.070  -25.329    2.644   2.152  -0.286  N3   XB7  32  
XB7  N4   N4   N  0  1  Y  N  N  -14.073  -11.266  -23.969    4.056   0.877   0.800  N4   XB7  33  
XB7  O1   O1   O  0  1  N  N  N   -4.157  -15.973  -33.296  -10.127   0.217  -0.563  O1   XB7  34  
XB7  H1   H1   H  0  1  N  N  N   -3.083  -15.782  -35.056  -10.182  -0.794  -2.364  H1   XB7  35  
XB7  H2   H2   H  0  1  N  N  N   -4.406  -14.591  -34.817  -10.661  -1.744  -0.937  H2   XB7  36  
XB7  H3   H3   H  0  1  N  N  N   -2.885  -14.445  -33.873  -11.762  -0.511  -1.595  H3   XB7  37  
XB7  H4   H4   H  0  1  N  N  N  -11.813  -13.505  -26.316    0.242   1.884   0.568  H4   XB7  38  
XB7  H5   H5   H  0  1  N  N  N  -10.914  -10.841  -27.441    0.575   0.465  -1.424  H5   XB7  39  
XB7  H6   H6   H  0  1  N  N  N  -12.418  -11.735  -27.848    0.023  -0.963  -0.515  H6   XB7  40  
XB7  H7   H7   H  0  1  N  N  N  -10.652  -12.108  -29.530   -1.630   1.539  -1.091  H7   XB7  41  
XB7  H8   H8   H  0  1  N  N  N  -11.087  -13.626  -28.673   -1.814  -0.038  -1.895  H8   XB7  42  
XB7  H9   H9   H  0  1  N  N  N  -16.445  -14.604  -25.499    3.654   4.275  -1.937  H9   XB7  43  
XB7  H10  H10  H  0  1  N  N  N  -18.450  -13.983  -24.217    6.068   4.664  -2.155  H10  XB7  44  
XB7  H11  H11  H  0  1  N  N  N  -18.465  -12.024  -22.749    7.672   3.239  -0.953  H11  XB7  45  
XB7  H12  H12  H  0  1  N  N  N  -16.455  -10.599  -22.509    6.877   1.409   0.481  H12  XB7  46  
XB7  H13  H13  H  0  1  N  N  N  -12.573  -10.185  -22.980    3.852  -0.380   2.467  H13  XB7  47  
XB7  H14  H14  H  0  1  N  N  N  -14.246   -9.889  -22.397    5.516   0.148   2.117  H14  XB7  48  
XB7  H15  H15  H  0  1  N  N  N  -15.796   -9.143  -24.599    6.818  -0.924   0.371  H15  XB7  49  
XB7  H16  H16  H  0  1  N  N  N  -15.988   -7.190  -26.098    7.193  -2.972  -0.943  H16  XB7  50  
XB7  H17  H17  H  0  1  N  N  N  -11.846   -6.379  -25.543    3.203  -4.237  -0.103  H17  XB7  51  
XB7  H18  H18  H  0  1  N  N  N  -11.671   -8.326  -24.031    2.833  -2.190   1.215  H18  XB7  52  
XB7  H19  H19  H  0  1  N  N  N   -6.149  -16.062  -29.253   -6.356   1.496   1.558  H19  XB7  53  
XB7  H20  H20  H  0  1  N  N  N   -4.941  -17.143  -31.096   -8.723   1.815   0.965  H20  XB7  54  
XB7  H21  H21  H  0  1  N  N  N   -4.905  -13.434  -33.221   -8.614  -1.765  -1.367  H21  XB7  55  
XB7  H22  H22  H  0  1  N  N  N   -6.116  -12.374  -31.366   -6.246  -2.077  -0.769  H22  XB7  56  
XB7  H23  H23  H  0  1  N  N  N   -6.708  -14.000  -28.095   -4.522  -0.078   1.782  H23  XB7  57  
XB7  H24  H24  H  0  1  N  N  N   -6.638  -12.428  -28.960   -4.476  -1.568   0.810  H24  XB7  58  
XB7  H25  H25  H  0  1  N  N  N   -8.703  -13.052  -30.196   -4.011  -0.227  -1.224  H25  XB7  59  
XB7  H26  H26  H  0  1  N  N  N   -8.786  -14.572  -29.243   -4.057   1.263  -0.252  H26  XB7  60  
XB7  H27  H27  H  0  1  N  N  N   -9.585  -14.536  -27.019   -2.780   0.359   2.156  H27  XB7  61  
XB7  H28  H28  H  0  1  N  N  N   -8.087  -13.635  -26.602   -2.187   1.768   1.244  H28  XB7  62  
XB7  H29  H29  H  0  1  N  N  N   -9.891  -13.408  -24.878   -0.564  -0.722   1.939  H29  XB7  63  
XB7  H30  H30  H  0  1  N  N  N   -9.393  -11.837  -25.592   -0.414   0.871   2.720  H30  XB7  64  
XB7  H32  H32  H  0  1  N  N  N  -11.527  -11.862  -24.343    1.832  -0.311   1.657  H32  XB7  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XB7  C1   O1   SING  N  N   1  
XB7  O1   C2   SING  N  N   2  
XB7  C3   C2   DOUB  Y  N   3  
XB7  C3   C4   SING  Y  N   4  
XB7  C2   C28  SING  Y  N   5  
XB7  C4   C5   DOUB  Y  N   6  
XB7  C28  C27  DOUB  Y  N   7  
XB7  C5   C27  SING  Y  N   8  
XB7  C5   C6   SING  N  N   9  
XB7  C7   C6   SING  N  N  10  
XB7  C7   N1   SING  N  N  11  
XB7  C12  N1   SING  N  N  12  
XB7  C12  C11  SING  N  N  13  
XB7  N1   C8   SING  N  N  14  
XB7  C11  C10  SING  N  N  15  
XB7  C8   C9   SING  N  N  16  
XB7  F1   C24  SING  N  N  17  
XB7  C10  C9   SING  N  N  18  
XB7  C10  N2   SING  N  N  19  
XB7  C24  C23  DOUB  Y  N  20  
XB7  C24  C25  SING  Y  N  21  
XB7  C23  C22  SING  Y  N  22  
XB7  N3   C13  DOUB  Y  N  23  
XB7  N3   C14  SING  Y  N  24  
XB7  C25  C26  DOUB  Y  N  25  
XB7  N2   C13  SING  N  N  26  
XB7  C13  N4   SING  Y  N  27  
XB7  C15  C14  DOUB  Y  N  28  
XB7  C15  C16  SING  Y  N  29  
XB7  C22  C21  DOUB  Y  N  30  
XB7  C14  C19  SING  Y  N  31  
XB7  C26  C21  SING  Y  N  32  
XB7  C21  C20  SING  N  N  33  
XB7  C16  C17  DOUB  Y  N  34  
XB7  N4   C19  SING  Y  N  35  
XB7  N4   C20  SING  N  N  36  
XB7  C19  C18  DOUB  Y  N  37  
XB7  C17  C18  SING  Y  N  38  
XB7  C1   H1   SING  N  N  39  
XB7  C1   H2   SING  N  N  40  
XB7  C1   H3   SING  N  N  41  
XB7  C10  H4   SING  N  N  42  
XB7  C11  H5   SING  N  N  43  
XB7  C11  H6   SING  N  N  44  
XB7  C12  H7   SING  N  N  45  
XB7  C12  H8   SING  N  N  46  
XB7  C15  H9   SING  N  N  47  
XB7  C16  H10  SING  N  N  48  
XB7  C17  H11  SING  N  N  49  
XB7  C18  H12  SING  N  N  50  
XB7  C20  H13  SING  N  N  51  
XB7  C20  H14  SING  N  N  52  
XB7  C22  H15  SING  N  N  53  
XB7  C23  H16  SING  N  N  54  
XB7  C25  H17  SING  N  N  55  
XB7  C26  H18  SING  N  N  56  
XB7  C27  H19  SING  N  N  57  
XB7  C28  H20  SING  N  N  58  
XB7  C3   H21  SING  N  N  59  
XB7  C4   H22  SING  N  N  60  
XB7  C6   H23  SING  N  N  61  
XB7  C6   H24  SING  N  N  62  
XB7  C7   H25  SING  N  N  63  
XB7  C7   H26  SING  N  N  64  
XB7  C8   H27  SING  N  N  65  
XB7  C8   H28  SING  N  N  66  
XB7  C9   H29  SING  N  N  67  
XB7  C9   H30  SING  N  N  68  
XB7  N2   H32  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XB7  SMILES            ACDLabs               12.01  "COc1ccc(cc1)CCN2CCC(CC2)Nc4n(c3c(cccc3)n4)Cc5ccc(cc5)F"  
XB7  InChI             InChI                 1.03   "InChI=1S/C28H31FN4O/c1-34-25-12-8-21(9-13-25)14-17-32-18-15-24(16-19-32)30-28-31-26-4-2-3-5-27(26)33(28)20-22-6-10-23(29)11-7-22/h2-13,24H,14-20H2,1H3,(H,30,31)"  
XB7  InChIKey          InChI                 1.03   GXDALQBWZGODGZ-UHFFFAOYSA-N  
XB7  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(CCN2CCC(CC2)Nc3nc4ccccc4n3Cc5ccc(F)cc5)cc1"  
XB7  SMILES            CACTVS                3.385  "COc1ccc(CCN2CCC(CC2)Nc3nc4ccccc4n3Cc5ccc(F)cc5)cc1"  
XB7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1)CCN2CCC(CC2)Nc3nc4ccccc4n3Cc5ccc(cc5)F"  
XB7  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1)CCN2CCC(CC2)Nc3nc4ccccc4n3Cc5ccc(cc5)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XB7  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine"  
XB7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[(4-fluorophenyl)methyl]-~{N}-[1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl]benzimidazol-2-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XB7  "Create component"  2020-12-08  RCSB  
XB7  "Initial release"   2021-02-24  RCSB  
##
