data_YL7
# 
_chem_comp.id                                    YL7 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-((((2-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H28 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YL7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M02 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YL7 C11 C1  C 0 1 N N S N N N 9.070  19.812 27.531 2.906  0.344  -1.064 C11 YL7 1  
YL7 C16 C2  C 0 1 N N N N N N 5.650  22.497 26.025 4.397  4.430  -0.786 C16 YL7 2  
YL7 C17 C3  C 0 1 N N N N N N 6.872  21.845 26.737 3.372  3.331  -0.970 C17 YL7 3  
YL7 O18 O1  O 0 1 N N N N N N 6.806  20.317 23.502 5.435  2.613  1.860  O18 YL7 4  
YL7 C23 C4  C 0 1 N N N N N N 11.479 26.058 24.539 -5.236 0.473  0.627  C23 YL7 5  
YL7 C24 C5  C 0 1 Y N N N N N 11.479 27.620 24.611 -6.489 0.336  -0.200 C24 YL7 6  
YL7 C29 C6  C 0 1 Y N N N N N 12.327 29.755 25.561 -7.569 -0.306 -2.238 C29 YL7 7  
YL7 C28 C7  C 0 1 Y N N N N N 11.473 30.496 24.738 -8.788 0.086  -1.718 C28 YL7 8  
YL7 C27 C8  C 0 1 Y N N N N N 10.626 29.824 23.855 -8.859 0.609  -0.440 C27 YL7 9  
YL7 C25 C9  C 0 1 Y N N N N N 10.638 28.407 23.805 -7.709 0.734  0.320  C25 YL7 10 
YL7 C02 C10 C 0 1 N N N N N N 11.061 24.031 25.821 -2.893 0.051  0.461  C02 YL7 11 
YL7 C04 C11 C 0 1 N N S N N N 12.254 22.136 26.988 -0.503 -0.420 0.496  C04 YL7 12 
YL7 C05 C12 C 0 1 N N N N N N 13.338 21.849 28.047 -0.345 -1.770 1.199  C05 YL7 13 
YL7 C06 C13 C 0 1 N N N N N N 14.757 22.272 27.655 0.907  -1.745 2.077  C06 YL7 14 
YL7 C07 C14 C 0 1 N N N N N N 15.262 21.442 26.462 0.711  -0.741 3.215  C07 YL7 15 
YL7 C08 C15 C 0 1 N N N N N N 15.764 22.213 28.855 1.148  -3.138 2.662  C08 YL7 16 
YL7 C09 C16 C 0 1 N N N N N N 10.863 21.586 27.456 0.608  -0.243 -0.507 C09 YL7 17 
YL7 C12 C17 C 0 1 N N N N N N 8.071  19.711 26.310 4.097  0.988  -0.351 C12 YL7 18 
YL7 C13 C18 C 0 1 N N R N N N 7.641  21.045 25.665 3.687  2.360  0.188  C13 YL7 19 
YL7 C14 C19 C 0 1 N N N N N N 6.638  20.993 24.505 4.853  3.034  0.882  C14 YL7 20 
YL7 C19 C20 C 0 1 N N S N N N 9.284  18.463 28.161 3.358  -0.952 -1.741 C19 YL7 21 
YL7 C30 C21 C 0 1 Y N N N N N 12.324 28.348 25.494 -6.419 -0.181 -1.480 C30 YL7 22 
YL7 F26 F1  F 0 1 N N N N N N 9.818  27.793 22.944 -7.777 1.245  1.569  F26 YL7 23 
YL7 N03 N1  N 0 1 N N N N N N 12.086 23.561 26.652 -1.795 -0.375 -0.193 N03 YL7 24 
YL7 N10 N2  N 0 1 N N N N N N 10.370 20.352 27.106 1.856  0.044  -0.088 N10 YL7 25 
YL7 N15 N3  N 0 1 N N N N N N 5.537  21.818 24.713 5.142  4.169  0.230  N15 YL7 26 
YL7 O01 O2  O 0 1 N N N N N N 10.322 23.272 25.215 -2.796 0.484  1.593  O01 YL7 27 
YL7 O20 O3  O 0 1 N N N N N N 8.041  17.949 28.561 4.460  -0.677 -2.608 O20 YL7 28 
YL7 O21 O4  O 0 1 N N N N N N 10.195 22.342 28.161 0.379  -0.360 -1.693 O21 YL7 29 
YL7 O22 O5  O 0 1 N N N N N N 10.873 25.395 25.658 -4.097 -0.003 -0.138 O22 YL7 30 
YL7 H1  H1  H 0 1 N N N N N N 8.624  20.485 28.278 2.518  1.031  -1.816 H1  YL7 31 
YL7 H2  H2  H 0 1 N N N N N N 5.016  23.282 26.409 4.491  5.302  -1.417 H2  YL7 32 
YL7 H4  H4  H 0 1 N N N N N N 6.529  21.173 27.537 2.362  3.728  -0.875 H4  YL7 33 
YL7 H5  H5  H 0 1 N N N N N N 7.520  22.624 27.165 3.503  2.840  -1.934 H5  YL7 34 
YL7 H6  H6  H 0 1 N N N N N N 10.935 25.759 23.631 -5.086 1.521  0.888  H6  YL7 35 
YL7 H7  H7  H 0 1 N N N N N N 12.524 25.721 24.468 -5.335 -0.118 1.537  H7  YL7 36 
YL7 H8  H8  H 0 1 N N N N N N 12.989 30.262 26.248 -7.513 -0.710 -3.238 H8  YL7 37 
YL7 H9  H9  H 0 1 N N N N N N 11.469 31.575 24.785 -9.684 -0.012 -2.312 H9  YL7 38 
YL7 H10 H10 H 0 1 N N N N N N 9.963  30.382 23.211 -9.811 0.915  -0.034 H10 YL7 39 
YL7 H11 H11 H 0 1 N N N N N N 12.530 21.592 26.073 -0.456 0.382  1.234  H11 YL7 40 
YL7 H12 H12 H 0 1 N N N N N N 13.065 22.385 28.968 -1.221 -1.960 1.819  H12 YL7 41 
YL7 H13 H13 H 0 1 N N N N N N 13.347 20.766 28.241 -0.250 -2.559 0.452  H13 YL7 42 
YL7 H14 H14 H 0 1 N N N N N N 14.709 23.321 27.327 1.767  -1.449 1.476  H14 YL7 43 
YL7 H15 H15 H 0 1 N N N N N N 16.281 21.761 26.197 -0.106 -1.073 3.856  H15 YL7 44 
YL7 H16 H16 H 0 1 N N N N N N 15.271 20.376 26.735 1.628  -0.673 3.802  H16 YL7 45 
YL7 H17 H17 H 0 1 N N N N N N 14.595 21.594 25.601 0.472  0.238  2.800  H17 YL7 46 
YL7 H18 H18 H 0 1 N N N N N N 15.376 22.815 29.690 1.287  -3.853 1.851  H18 YL7 47 
YL7 H19 H19 H 0 1 N N N N N N 15.886 21.169 29.180 2.040  -3.120 3.288  H19 YL7 48 
YL7 H20 H20 H 0 1 N N N N N N 16.738 22.614 28.536 0.288  -3.433 3.263  H20 YL7 49 
YL7 H21 H21 H 0 1 N N N N N N 7.162  19.201 26.662 4.412  0.352  0.476  H21 YL7 50 
YL7 H22 H22 H 0 1 N N N N N N 8.554  19.103 25.531 4.922  1.105  -1.054 H22 YL7 51 
YL7 H23 H23 H 0 1 N N N N N N 8.534  21.608 25.356 2.833  2.270  0.860  H23 YL7 52 
YL7 H24 H24 H 0 1 N N N N N N 9.890  18.628 29.064 2.533  -1.365 -2.323 H24 YL7 53 
YL7 S1  S1  S 0 1 N Y N N N N 9.735  17.802 27.451 3.865  -2.150 -0.477 S1  YL7 54 
YL7 H26 H26 H 0 1 N N N N N N 12.992 27.798 26.141 -5.467 -0.487 -1.887 H26 YL7 55 
YL7 H27 H27 H 0 1 N N N N N N 12.732 24.222 27.034 -1.860 -0.653 -1.120 H27 YL7 56 
YL7 H28 H28 H 0 1 N N N N N N 10.939 19.777 26.517 2.059  0.052  0.861  H28 YL7 57 
YL7 H30 H30 H 0 1 N N N N N N 8.164  17.096 28.961 5.232  -0.307 -2.157 H30 YL7 58 
YL7 O1  O6  O 0 1 N Y N N N N ?      ?      ?      4.991  -1.667 0.244  O1  YL7 59 
YL7 O2  O7  O 0 1 N Y N N N N ?      ?      ?      2.730  -2.672 0.200  O2  YL7 60 
YL7 O3  O8  O 0 1 N Y N N N N ?      ?      ?      4.406  -3.332 -1.270 O3  YL7 61 
YL7 H3  H3  H 0 1 N Y N N N N ?      ?      ?      4.720  -4.063 -0.720 H3  YL7 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YL7 F26 C25 SING N N 1  
YL7 O18 C14 DOUB N N 2  
YL7 C25 C27 DOUB Y N 3  
YL7 C25 C24 SING Y N 4  
YL7 C27 C28 SING Y N 5  
YL7 C14 N15 SING N N 6  
YL7 C14 C13 SING N N 7  
YL7 C23 C24 SING N N 8  
YL7 C23 O22 SING N N 9  
YL7 C24 C30 DOUB Y N 10 
YL7 N15 C16 DOUB N N 11 
YL7 C28 C29 DOUB Y N 12 
YL7 O01 C02 DOUB N N 13 
YL7 C30 C29 SING Y N 14 
YL7 O22 C02 SING N N 15 
YL7 C13 C12 SING N N 16 
YL7 C13 C17 SING N N 17 
YL7 C02 N03 SING N N 18 
YL7 C16 C17 SING N N 19 
YL7 C12 C11 SING N N 20 
YL7 C07 C06 SING N N 21 
YL7 N03 C04 SING N N 22 
YL7 C04 C09 SING N N 23 
YL7 C04 C05 SING N N 24 
YL7 N10 C09 SING N N 25 
YL7 N10 C11 SING N N 26 
YL7 C09 O21 DOUB N N 27 
YL7 C11 C19 SING N N 28 
YL7 C06 C05 SING N N 29 
YL7 C06 C08 SING N N 30 
YL7 C19 O20 SING N N 31 
YL7 C11 H1  SING N N 32 
YL7 C16 H2  SING N N 33 
YL7 C17 H4  SING N N 34 
YL7 C17 H5  SING N N 35 
YL7 C23 H6  SING N N 36 
YL7 C23 H7  SING N N 37 
YL7 C29 H8  SING N N 38 
YL7 C28 H9  SING N N 39 
YL7 C27 H10 SING N N 40 
YL7 C04 H11 SING N N 41 
YL7 C05 H12 SING N N 42 
YL7 C05 H13 SING N N 43 
YL7 C06 H14 SING N N 44 
YL7 C07 H15 SING N N 45 
YL7 C07 H16 SING N N 46 
YL7 C07 H17 SING N N 47 
YL7 C08 H18 SING N N 48 
YL7 C08 H19 SING N N 49 
YL7 C08 H20 SING N N 50 
YL7 C12 H21 SING N N 51 
YL7 C12 H22 SING N N 52 
YL7 C13 H23 SING N N 53 
YL7 C19 H24 SING N N 54 
YL7 C19 S1  SING N N 55 
YL7 C30 H26 SING N N 56 
YL7 N03 H27 SING N N 57 
YL7 N10 H28 SING N N 58 
YL7 O20 H30 SING N N 59 
YL7 S1  O1  DOUB N N 60 
YL7 S1  O2  DOUB N N 61 
YL7 S1  O3  SING N N 62 
YL7 O3  H3  SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YL7 SMILES           ACDLabs              12.01 "O=C1N=CCC1CC(NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1F)C(O)S(=O)(=O)O"                                                                                                                                                             
YL7 InChI            InChI                1.03  "InChI=1S/C21H28FN3O8S/c1-12(2)9-16(25-21(29)33-11-14-5-3-4-6-15(14)22)19(27)24-17(20(28)34(30,31)32)10-13-7-8-23-18(13)26/h3-6,8,12-13,16-17,20,28H,7,9-11H2,1-2H3,(H,24,27)(H,25,29)(H,30,31,32)/t13-,16-,17-,20-/m0/s1" 
YL7 InChIKey         InChI                1.03  VAWJCTITNJHIPN-FDRFZEDHSA-N                                                                                                                                                                                                
YL7 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1F)C(=O)N[C@@H](C[C@@H]2CC=NC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                        
YL7 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1F)C(=O)N[CH](C[CH]2CC=NC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                               
YL7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F"                                                                                                                                              
YL7 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YL7 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-2-[(N-{[(2-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propane-1-sulfonic acid"                                
YL7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(2-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YL7 "Create component" 2021-03-12 RCSB 
YL7 "Initial release"  2021-03-24 RCSB 
YL7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YL7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
