data_2G8
#

_chem_comp.id                                   2G8
_chem_comp.name                                 "P-((((benzyloxy)carbonyl)amino)methyl)-N-((S)-4-methyl-1-oxo-1-(propylamino)pentan-2-yl)phosphonamidic acid"
_chem_comp.type                                 PEPTIDE-LIKE
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H30 N3 O5 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-10-11
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       399.422
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2G8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4MXJ
_chem_comp.pdbx_subcomponent_list               "PHQ PGL LEU 3CN"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2G8  C7   C7   C  0  1  N  N  N  13.618  41.574  -11.008  -4.876   1.205  -0.051  C7    PHQ   1  
2G8  C6   C6   C  0  1  Y  N  N  14.999  41.160  -11.446  -6.212   0.733   0.461  C6    PHQ   2  
2G8  C1   C1   C  0  1  Y  N  N  15.188  40.609  -12.719  -7.296   0.666  -0.394  C1    PHQ   3  
2G8  C2   C2   C  0  1  Y  N  N  16.459  40.216  -13.144  -8.522   0.233   0.076  C2    PHQ   4  
2G8  C3   C3   C  0  1  Y  N  N  17.555  40.377  -12.300  -8.663  -0.134   1.402  C3    PHQ   5  
2G8  C4   C4   C  0  1  Y  N  N  17.379  40.938  -11.034  -7.579  -0.068   2.257  C4    PHQ   6  
2G8  C5   C5   C  0  1  Y  N  N  16.109  41.320  -10.606  -6.352   0.361   1.785  C5    PHQ   7  
2G8  C9   C9   C  0  1  N  N  N  12.458  40.867   -8.915  -2.891   0.322  -1.039  C9    PHQ   8  
2G8  O10  O10  O  0  1  N  N  N  12.010  41.984   -8.707  -2.467   1.461  -1.061  O10   PHQ   9  
2G8  O8   O8   O  0  1  N  N  N  13.041  40.584  -10.116  -4.117   0.069  -0.543  O8    PHQ  10  
2G8  N11  N11  N  0  1  N  N  N  12.590  39.959   -7.906  -2.134  -0.688  -1.512  N     PGL  11  
2G8  C12  C12  C  0  1  N  N  N  12.003  40.178   -6.593  -0.800  -0.413  -2.052  C     PGL  12  
2G8  P13  P13  P  0  1  N  N  N  11.544  38.520   -5.964   0.447  -0.667  -0.747  P     PGL  13  
2G8  O14  O14  O  0  1  N  N  N  10.196  38.148   -6.526   0.174   0.249   0.382  O1    PGL  14  
2G8  O15  O15  O  0  1  N  N  N  12.654  37.540   -6.164   0.381  -2.191  -0.230  O2    PGL  15  
2G8  N16  N16  N  0  1  N  N  N  11.340  38.940   -4.286   1.980  -0.351  -1.367  N     LEU  16  
2G8  C17  C17  C  0  1  N  N  S  10.142  38.431   -3.581   3.001  -0.435  -0.315  CA    LEU  17  
2G8  C22  C22  C  0  1  N  N  N   8.915  39.306   -3.828   4.074   0.591  -0.574  C     LEU  18  
2G8  O23  O23  O  0  1  N  N  N   7.792  38.830   -3.867   4.139   1.142  -1.652  O     LEU  19  
2G8  C18  C18  C  0  1  N  N  N  10.492  38.441   -2.095   3.621  -1.834  -0.316  CB    LEU  20  
2G8  C19  C19  C  0  1  N  N  N   9.372  37.951   -1.170   4.582  -1.967   0.867  CG    LEU  21  
2G8  C20  C20  C  0  1  N  N  N   9.226  36.434   -1.278   3.788  -1.924   2.175  CD1   LEU  22  
2G8  C21  C21  C  0  1  N  N  N   9.678  38.369    0.275   5.331  -3.298   0.769  CD2   LEU  23  
2G8  C29  C29  C  0  1  N  N  N   8.562  42.573   -1.807   7.839   3.228   1.201  CA    3CN  24  
2G8  C26  C26  C  0  1  N  N  N   8.424  42.892   -3.290   6.821   2.108   1.422  CB    3CN  25  
2G8  C25  C25  C  0  1  N  N  N   8.138  41.660   -4.151   5.938   1.968   0.181  CC    3CN  26  
2G8  N24  N24  N  0  1  N  N  N   9.169  40.654   -3.960   4.963   0.895   0.393  ND    3CN  27  
2G8  H23  H23  H  0  1  N  N  N  13.680  42.539  -10.484  -5.029   1.918  -0.862  H23   PHQ  28  
2G8  H24  H24  H  0  1  N  N  N  12.975  41.679  -11.894  -4.327   1.687   0.757  H24   PHQ  29  
2G8  H25  H25  H  0  1  N  N  N  14.342  40.487  -13.379  -7.186   0.952  -1.429  H25   PHQ  30  
2G8  H26  H26  H  0  1  N  N  N  16.592  39.788  -14.126  -9.369   0.182  -0.591  H26   PHQ  31  
2G8  H27  H27  H  0  1  N  N  N  18.538  40.069  -12.624  -9.621  -0.472   1.769  H27   PHQ  32  
2G8  H28  H28  H  0  1  N  N  N  18.230  41.077  -10.384  -7.690  -0.354   3.292  H28   PHQ  33  
2G8  H29  H29  H  0  1  N  N  N  15.979  41.742   -9.620  -5.504   0.408   2.452  H29   PHQ  34  
2G8  H30  H30  H  0  1  N  N  N  13.105  39.118   -8.074  -2.473  -1.597  -1.495  HN1   PGL  35  
2G8  H21  H21  H  0  1  N  N  N  12.734  40.653   -5.922  -0.599  -1.088  -2.884  H1    PGL  36  
2G8  H22  H22  H  0  1  N  N  N  11.111  40.817   -6.675  -0.756   0.618  -2.401  H2    PGL  37  
2G8  H20  H20  H  0  1  N  N  N  12.329  36.786   -6.642   0.624  -2.844  -0.900  HO2   PGL  38  
2G8  H1   H1   H  0  1  N  N  N  12.141  38.598   -3.795   2.196  -0.974  -2.131  H     LEU  39  
2G8  H2   H2   H  0  1  N  N  N   9.926  37.400   -3.899   2.541  -0.243   0.654  HA    LEU  40  
2G8  H3   H3   H  0  1  N  N  N  11.368  37.793   -1.945   2.832  -2.581  -0.230  HB2   LEU  41  
2G8  H4   H4   H  0  1  N  N  N  10.745  39.473   -1.810   4.168  -1.988  -1.247  HB3   LEU  42  
2G8  H5   H5   H  0  1  N  N  N   8.427  38.421   -1.480   5.297  -1.145   0.849  HG    LEU  43  
2G8  H6   H6   H  0  1  N  N  N   8.420  36.094   -0.611   4.478  -1.944   3.019  HD11  LEU  44  
2G8  H7   H7   H  0  1  N  N  N   8.982  36.162   -2.316   3.197  -1.009   2.211  HD12  LEU  45  
2G8  H8   H8   H  0  1  N  N  N  10.171  35.953   -0.986   3.125  -2.787   2.227  HD13  LEU  46  
2G8  H9   H9   H  0  1  N  N  N   8.874  38.017    0.937   5.896  -3.329  -0.162  HD21  LEU  47  
2G8  H10  H10  H  0  1  N  N  N  10.634  37.925    0.591   6.015  -3.392   1.612  HD22  LEU  48  
2G8  H11  H11  H  0  1  N  N  N   9.747  39.465    0.333   4.615  -4.120   0.788  HD23  LEU  49  
2G8  H17  H17  H  0  1  N  N  N   8.766  43.499   -1.250   7.313   4.166   1.021  HA1   3CN  50  
2G8  H18  H18  H  0  1  N  N  N   7.628  42.123   -1.440   8.468   3.328   2.085  HA2   3CN  51  
2G8  H19  H19  H  0  1  N  N  N   9.392  41.866   -1.660   8.460   2.989   0.338  HA3   3CN  52  
2G8  H15  H15  H  0  1  N  N  N   9.362  43.350   -3.637   7.346   1.170   1.602  HB1   3CN  53  
2G8  H16  H16  H  0  1  N  N  N   7.598  43.607   -3.418   6.199   2.347   2.285  HB2   3CN  54  
2G8  H13  H13  H  0  1  N  N  N   8.114  41.956   -5.210   5.412   2.906   0.001  HC1   3CN  55  
2G8  H14  H14  H  0  1  N  N  N   7.163  41.238   -3.866   6.559   1.729  -0.682  HC2   3CN  56  
2G8  H12  H12  H  0  1  N  N  N  10.121  40.958   -3.922   4.957   0.404   1.229  HND1  3CN  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2G8  C2   C1   DOUB  Y  N   1  
2G8  C2   C3   SING  Y  N   2  
2G8  C1   C6   SING  Y  N   3  
2G8  C3   C4   DOUB  Y  N   4  
2G8  C6   C7   SING  N  N   5  
2G8  C6   C5   DOUB  Y  N   6  
2G8  C4   C5   SING  Y  N   7  
2G8  C7   O8   SING  N  N   8  
2G8  O8   C9   SING  N  N   9  
2G8  C9   O10  DOUB  N  N  10  
2G8  C9   N11  SING  N  N  11  
2G8  N11  C12  SING  N  N  12  
2G8  C12  P13  SING  N  N  13  
2G8  O14  P13  DOUB  N  N  14  
2G8  O15  P13  SING  N  N  15  
2G8  P13  N16  SING  N  N  16  
2G8  N16  C17  SING  N  N  17  
2G8  C25  N24  SING  N  N  18  
2G8  C25  C26  SING  N  N  19  
2G8  N24  C22  SING  N  N  20  
2G8  O23  C22  DOUB  N  N  21  
2G8  C22  C17  SING  N  N  22  
2G8  C17  C18  SING  N  N  23  
2G8  C26  C29  SING  N  N  24  
2G8  C18  C19  SING  N  N  25  
2G8  C20  C19  SING  N  N  26  
2G8  C19  C21  SING  N  N  27  
2G8  N16  H1   SING  N  N  28  
2G8  C17  H2   SING  N  N  29  
2G8  C18  H3   SING  N  N  30  
2G8  C18  H4   SING  N  N  31  
2G8  C19  H5   SING  N  N  32  
2G8  C20  H6   SING  N  N  33  
2G8  C20  H7   SING  N  N  34  
2G8  C20  H8   SING  N  N  35  
2G8  C21  H9   SING  N  N  36  
2G8  C21  H10  SING  N  N  37  
2G8  C21  H11  SING  N  N  38  
2G8  N24  H12  SING  N  N  39  
2G8  C25  H13  SING  N  N  40  
2G8  C25  H14  SING  N  N  41  
2G8  C26  H15  SING  N  N  42  
2G8  C26  H16  SING  N  N  43  
2G8  C29  H17  SING  N  N  44  
2G8  C29  H18  SING  N  N  45  
2G8  C29  H19  SING  N  N  46  
2G8  O15  H20  SING  N  N  47  
2G8  C12  H21  SING  N  N  48  
2G8  C12  H22  SING  N  N  49  
2G8  C7   H23  SING  N  N  50  
2G8  C7   H24  SING  N  N  51  
2G8  C1   H25  SING  N  N  52  
2G8  C2   H26  SING  N  N  53  
2G8  C3   H27  SING  N  N  54  
2G8  C4   H28  SING  N  N  55  
2G8  C5   H29  SING  N  N  56  
2G8  N11  H30  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2G8  SMILES            ACDLabs               12.01  "O=C(NCCC)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C"  
2G8  InChI             InChI                 1.03   "InChI=1S/C18H30N3O5P/c1-4-10-19-17(22)16(11-14(2)3)21-27(24,25)13-20-18(23)26-12-15-8-6-5-7-9-15/h5-9,14,16H,4,10-13H2,1-3H3,(H,19,22)(H,20,23)(H2,21,24,25)/t16-/m0/s1"  
2G8  InChIKey          InChI                 1.03   GSTDCDKICCYPKA-INIZCTEOSA-N  
2G8  SMILES_CANONICAL  CACTVS                3.385  "CCCNC(=O)[C@H](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1"  
2G8  SMILES            CACTVS                3.385  "CCCNC(=O)[CH](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1"  
2G8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCNC(=O)[C@H](CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O"  
2G8  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCNC(=O)C(CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2G8  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide"  
2G8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "N-[(2S)-4-methyl-1-oxidanylidene-1-(propylamino)pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2G8  "Create component"  2013-10-11  RCSB  
2G8  "Modify synonyms"   2013-10-11  RCSB  
2G8  "Initial release"   2014-04-02  RCSB  
2G8  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2G8
_pdbx_chem_comp_synonyms.name        "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
