data_2Y8
#

_chem_comp.id                                   2Y8
_chem_comp.name                                 "(R)-2-((1-(2-(3-(2-fluoroethoxy)-4-methoxyphenyl)-5-methylthiazol-4-yl)ethyl)thio)pyrimidine-4,6-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H22 F N5 O2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-{[(1R)-1-{2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-methyl-1,3-thiazol-4-yl}ethyl]sulfanyl}pyrimidine-4,6-diamine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-04-10
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       435.539
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2Y8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4Q1E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2Y8  FAF  FAF  F  0  1  N  N  N  27.487    0.279  -13.867  -8.205   1.404   0.383  FAF  2Y8   1  
2Y8  CAK  CAK  C  0  1  N  N  N  27.344    1.174  -12.922  -7.501   1.584  -0.812  CAK  2Y8   2  
2Y8  CAL  CAL  C  0  1  N  N  N  25.903    1.101  -12.549  -6.028   1.233  -0.595  CAL  2Y8   3  
2Y8  OAQ  OAQ  O  0  1  N  N  N  25.830    1.916  -11.364  -5.909  -0.159  -0.292  OAQ  2Y8   4  
2Y8  CAY  CAY  C  0  1  Y  N  N  24.685    1.748  -10.682  -4.656  -0.637  -0.069  CAY  2Y8   5  
2Y8  CAJ  CAJ  C  0  1  Y  N  N  24.209    0.470  -10.377  -3.569   0.213  -0.140  CAJ  2Y8   6  
2Y8  CAX  CAX  C  0  1  Y  N  N  24.012    2.911  -10.266  -4.469  -1.984   0.237  CAX  2Y8   7  
2Y8  OAP  OAP  O  0  1  N  N  N  24.546    4.107  -10.609  -5.540  -2.818   0.311  OAP  2Y8   8  
2Y8  CAA  CAA  C  0  1  N  N  N  24.033    5.337  -10.044  -5.276  -4.186   0.629  CAA  2Y8   9  
2Y8  CAH  CAH  C  0  1  Y  N  N  22.838    2.785   -9.548  -3.192  -2.475   0.466  CAH  2Y8  10  
2Y8  CAG  CAG  C  0  1  Y  N  N  22.368    1.520   -9.262  -2.102  -1.633   0.391  CAG  2Y8  11  
2Y8  CAW  CAW  C  0  1  Y  N  N  23.040    0.366   -9.661  -2.283  -0.282   0.090  CAW  2Y8  12  
2Y8  CBA  CBA  C  0  1  Y  N  N  22.536   -0.825   -9.350  -1.117   0.623   0.016  CBA  2Y8  13  
2Y8  NAO  NAO  N  0  1  Y  N  N  22.746   -2.011   -9.972   0.124   0.274   0.206  NAO  2Y8  14  
2Y8  SAS  SAS  S  0  1  Y  N  N  21.589   -0.994   -8.151  -1.181   2.345  -0.351  SAS  2Y8  15  
2Y8  CAV  CAV  C  0  1  Y  N  N  21.353   -2.544   -8.307   0.573   2.438  -0.197  CAV  2Y8  16  
2Y8  CAB  CAB  C  0  1  N  N  N  20.465   -3.368   -7.399   1.411   3.678  -0.374  CAB  2Y8  17  
2Y8  CBB  CBB  C  0  1  Y  N  N  22.054   -2.999   -9.357   1.032   1.218   0.099  CBB  2Y8  18  
2Y8  CBC  CBC  C  0  1  N  N  R  22.036   -4.501   -9.760   2.500   0.941   0.296  CBC  2Y8  19  
2Y8  CAC  CAC  C  0  1  N  N  N  21.524   -4.703  -11.201   2.790   0.767   1.789  CAC  2Y8  20  
2Y8  SAR  SAR  S  0  1  N  N  N  23.666   -5.246   -9.566   2.953  -0.572  -0.587  SAR  2Y8  21  
2Y8  C2   C2   C  0  1  Y  N  N  23.294   -6.964   -9.331   4.695  -0.572  -0.321  C2   2Y8  22  
2Y8  N3   N3   N  0  1  Y  N  N  22.012   -7.389   -9.369   5.240   0.408   0.385  N3   2Y8  23  
2Y8  N1   N1   N  0  1  Y  N  N  24.293   -7.838   -9.086   5.425  -1.554  -0.828  N1   2Y8  24  
2Y8  C6   C6   C  0  1  Y  N  N  24.007   -9.157   -8.921   6.743  -1.587  -0.648  C6   2Y8  25  
2Y8  NAD  NAD  N  0  1  N  N  N  25.009  -10.002   -8.689   7.500  -2.618  -1.182  NAD  2Y8  26  
2Y8  C5   C5   C  0  1  Y  N  N  22.698   -9.619   -8.969   7.352  -0.572   0.084  C5   2Y8  27  
2Y8  C4   C4   C  0  1  Y  N  N  21.687   -8.677   -9.199   6.552   0.441   0.606  C4   2Y8  28  
2Y8  NAE  NAE  N  0  1  N  N  N  20.407   -9.024   -9.231   7.114   1.469   1.347  NAE  2Y8  29  
2Y8  H1   H1   H  0  1  N  N  N  27.981    0.932  -12.059  -7.919   0.935  -1.582  H1   2Y8  30  
2Y8  H2   H2   H  0  1  N  N  N  27.598    2.177  -13.296  -7.583   2.623  -1.130  H2   2Y8  31  
2Y8  H3   H3   H  0  1  N  N  N  25.267    1.509  -13.349  -5.463   1.457  -1.499  H3   2Y8  32  
2Y8  H4   H4   H  0  1  N  N  N  25.603    0.065  -12.335  -5.633   1.820   0.235  H4   2Y8  33  
2Y8  H5   H5   H  0  1  N  N  N  24.745   -0.412  -10.695  -3.712   1.257  -0.373  H5   2Y8  34  
2Y8  H6   H6   H  0  1  N  N  N  24.598    6.190  -10.448  -6.214  -4.740   0.656  H6   2Y8  35  
2Y8  H7   H7   H  0  1  N  N  N  22.970    5.445  -10.305  -4.622  -4.616  -0.130  H7   2Y8  36  
2Y8  H8   H8   H  0  1  N  N  N  24.141    5.311   -8.950  -4.791  -4.246   1.603  H8   2Y8  37  
2Y8  H9   H9   H  0  1  N  N  N  22.299    3.660   -9.217  -3.051  -3.519   0.703  H9   2Y8  38  
2Y8  H10  H10  H  0  1  N  N  N  21.446    1.420   -8.709  -1.109  -2.018   0.570  H10  2Y8  39  
2Y8  H11  H11  H  0  1  N  N  N  20.022   -2.718   -6.630   0.764   4.522  -0.615  H11  2Y8  40  
2Y8  H12  H12  H  0  1  N  N  N  19.663   -3.832   -7.993   1.951   3.886   0.550  H12  2Y8  41  
2Y8  H13  H13  H  0  1  N  N  N  21.064   -4.153   -6.915   2.123   3.522  -1.184  H13  2Y8  42  
2Y8  H14  H14  H  0  1  N  N  N  21.372   -5.042   -9.070   3.082   1.777  -0.092  H14  2Y8  43  
2Y8  H15  H15  H  0  1  N  N  N  20.530   -4.244  -11.305   2.207  -0.069   2.177  H15  2Y8  44  
2Y8  H16  H16  H  0  1  N  N  N  22.222   -4.230  -11.908   3.852   0.567   1.931  H16  2Y8  45  
2Y8  H17  H17  H  0  1  N  N  N  21.456   -5.779  -11.418   2.517   1.678   2.321  H17  2Y8  46  
2Y8  H18  H18  H  0  1  N  N  N  25.873   -9.499   -8.672   7.069  -3.322  -1.691  H18  2Y8  47  
2Y8  H19  H19  H  0  1  N  N  N  24.868  -10.452   -7.807   8.460  -2.635  -1.046  H19  2Y8  48  
2Y8  H20  H20  H  0  1  N  N  N  22.468  -10.666   -8.834   8.420  -0.572   0.248  H20  2Y8  49  
2Y8  H21  H21  H  0  1  N  N  N  19.845   -8.212   -9.388   6.550   2.171   1.708  H21  2Y8  50  
2Y8  H22  H22  H  0  1  N  N  N  20.258   -9.681   -9.970   8.071   1.487   1.504  H22  2Y8  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2Y8  FAF  CAK  SING  N  N   1  
2Y8  CAK  CAL  SING  N  N   2  
2Y8  CAL  OAQ  SING  N  N   3  
2Y8  OAQ  CAY  SING  N  N   4  
2Y8  CAC  CBC  SING  N  N   5  
2Y8  CAY  CAJ  DOUB  Y  N   6  
2Y8  CAY  CAX  SING  Y  N   7  
2Y8  OAP  CAX  SING  N  N   8  
2Y8  OAP  CAA  SING  N  N   9  
2Y8  CAJ  CAW  SING  Y  N  10  
2Y8  CAX  CAH  DOUB  Y  N  11  
2Y8  NAO  CBB  SING  Y  N  12  
2Y8  NAO  CBA  DOUB  Y  N  13  
2Y8  CBC  SAR  SING  N  N  14  
2Y8  CBC  CBB  SING  N  N  15  
2Y8  CAW  CBA  SING  N  N  16  
2Y8  CAW  CAG  DOUB  Y  N  17  
2Y8  SAR  C2   SING  N  N  18  
2Y8  CAH  CAG  SING  Y  N  19  
2Y8  N3   C2   DOUB  Y  N  20  
2Y8  N3   C4   SING  Y  N  21  
2Y8  CBB  CAV  DOUB  Y  N  22  
2Y8  CBA  SAS  SING  Y  N  23  
2Y8  C2   N1   SING  Y  N  24  
2Y8  NAE  C4   SING  N  N  25  
2Y8  C4   C5   DOUB  Y  N  26  
2Y8  N1   C6   DOUB  Y  N  27  
2Y8  C5   C6   SING  Y  N  28  
2Y8  C6   NAD  SING  N  N  29  
2Y8  CAV  SAS  SING  Y  N  30  
2Y8  CAV  CAB  SING  N  N  31  
2Y8  CAK  H1   SING  N  N  32  
2Y8  CAK  H2   SING  N  N  33  
2Y8  CAL  H3   SING  N  N  34  
2Y8  CAL  H4   SING  N  N  35  
2Y8  CAJ  H5   SING  N  N  36  
2Y8  CAA  H6   SING  N  N  37  
2Y8  CAA  H7   SING  N  N  38  
2Y8  CAA  H8   SING  N  N  39  
2Y8  CAH  H9   SING  N  N  40  
2Y8  CAG  H10  SING  N  N  41  
2Y8  CAB  H11  SING  N  N  42  
2Y8  CAB  H12  SING  N  N  43  
2Y8  CAB  H13  SING  N  N  44  
2Y8  CBC  H14  SING  N  N  45  
2Y8  CAC  H15  SING  N  N  46  
2Y8  CAC  H16  SING  N  N  47  
2Y8  CAC  H17  SING  N  N  48  
2Y8  NAD  H18  SING  N  N  49  
2Y8  NAD  H19  SING  N  N  50  
2Y8  C5   H20  SING  N  N  51  
2Y8  NAE  H21  SING  N  N  52  
2Y8  NAE  H22  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2Y8  SMILES            ACDLabs               12.01  "FCCOc1c(OC)ccc(c1)c2nc(c(s2)C)C(Sc3nc(N)cc(n3)N)C"  
2Y8  InChI             InChI                 1.03   "InChI=1S/C19H22FN5O2S2/c1-10-17(11(2)29-19-23-15(21)9-16(22)24-19)25-18(28-10)12-4-5-13(26-3)14(8-12)27-7-6-20/h4-5,8-9,11H,6-7H2,1-3H3,(H4,21,22,23,24)/t11-/m1/s1"  
2Y8  InChIKey          InChI                 1.03   PLRSHXVGFPURIR-LLVKDONJSA-N  
2Y8  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(cc1OCCF)c2sc(C)c(n2)[C@@H](C)Sc3nc(N)cc(N)n3"  
2Y8  SMILES            CACTVS                3.385  "COc1ccc(cc1OCCF)c2sc(C)c(n2)[CH](C)Sc3nc(N)cc(N)n3"  
2Y8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1c(nc(s1)c2ccc(c(c2)OCCF)OC)[C@@H](C)Sc3nc(cc(n3)N)N"  
2Y8  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1c(nc(s1)c2ccc(c(c2)OCCF)OC)C(C)Sc3nc(cc(n3)N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2Y8  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{[(1R)-1-{2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-methyl-1,3-thiazol-4-yl}ethyl]sulfanyl}pyrimidine-4,6-diamine"  
2Y8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[(1R)-1-[2-[3-(2-fluoranylethoxy)-4-methoxy-phenyl]-5-methyl-1,3-thiazol-4-yl]ethyl]sulfanylpyrimidine-4,6-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2Y8  "Create component"    2014-04-10  RCSB  
2Y8  "Modify name"         2014-04-11  RCSB  
2Y8  "Modify synonyms"     2014-04-11  RCSB  
2Y8  "Initial release"     2014-11-05  RCSB  
2Y8  "Other modification"  2020-05-27  RCSB  
2Y8  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2Y8
_pdbx_chem_comp_synonyms.name        "2-{[(1R)-1-{2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-methyl-1,3-thiazol-4-yl}ethyl]sulfanyl}pyrimidine-4,6-diamine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
