data_7M8
# 
_chem_comp.id                                    7M8 
_chem_comp.name                                  "6-(3-oxidanylpropyl)-2-(1,3,6-trimethyl-2-oxidanylidene-benzimidazol-5-yl)benzo[de]isoquinoline-1,3-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H23 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-20 
_chem_comp.pdbx_modified_date                    2017-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.468 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7M8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MG2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7M8 C1  C1  C 0 1 Y N N 23.014 68.598 17.401 3.507  2.832  -0.078 C1  7M8 1  
7M8 C2  C2  C 0 1 Y N N 22.310 69.676 16.888 2.138  2.723  0.133  C2  7M8 2  
7M8 C3  C3  C 0 1 Y N N 21.044 69.958 17.345 1.512  1.490  0.027  C3  7M8 3  
7M8 C4  C4  C 0 1 Y N N 20.453 69.151 18.347 2.287  0.353  -0.299 C4  7M8 4  
7M8 C8  C5  C 0 1 N N N 20.341 65.082 21.279 6.637  -0.649 0.277  C8  7M8 5  
7M8 C9  C6  C 0 1 N N N 20.967 63.731 21.494 8.145  -0.543 0.042  C9  7M8 6  
7M8 C10 C7  C 0 1 Y N N 19.170 69.452 18.860 1.659  -0.909 -0.411 C10 7M8 7  
7M8 C11 C8  C 0 1 Y N N 18.594 68.630 19.801 2.428  -2.018 -0.730 C11 7M8 8  
7M8 C12 C9  C 0 1 Y N N 19.264 67.512 20.269 3.796  -1.883 -0.937 C12 7M8 9  
7M8 C13 C10 C 0 1 N N N 18.429 70.630 18.363 0.210  -0.998 -0.183 C13 7M8 10 
7M8 C14 C11 C 0 1 Y N N 18.217 72.339 16.665 -1.880 -0.019 0.338  C14 7M8 11 
7M8 C15 C12 C 0 1 Y N N 18.200 73.645 17.161 -2.366 -0.281 1.613  C15 7M8 12 
7M8 C16 C13 C 0 1 Y N N 17.439 74.597 16.478 -3.724 -0.403 1.828  C16 7M8 13 
7M8 C17 C14 C 0 1 Y N N 16.711 74.219 15.354 -4.608 -0.263 0.768  C17 7M8 14 
7M8 C18 C15 C 0 1 Y N N 16.731 72.910 14.899 -4.123 0.001  -0.514 C18 7M8 15 
7M8 C19 C16 C 0 1 Y N N 17.486 71.950 15.543 -2.759 0.128  -0.725 C19 7M8 16 
7M8 C20 C17 C 0 1 N N N 15.353 74.089 13.524 -6.339 -0.115 -0.617 C20 7M8 17 
7M8 C21 C18 C 0 1 N N N 15.542 76.356 14.601 -6.925 -0.587 1.771  C21 7M8 18 
7M8 C24 C19 C 0 1 N N N 20.297 71.103 16.780 0.068  1.321  0.240  C24 7M8 19 
7M8 O3  O1  O 0 1 N N N 20.727 71.796 15.871 -0.619 2.284  0.521  O3  7M8 20 
7M8 N   N1  N 0 1 N N N 19.027 71.350 17.319 -0.500 0.105  0.126  N   7M8 21 
7M8 O2  O2  O 0 1 N N N 17.381 71.018 18.860 -0.352 -2.072 -0.274 O2  7M8 22 
7M8 C6  C20 C 0 1 Y N N 20.527 67.193 19.827 4.420  -0.672 -0.833 C6  7M8 23 
7M8 C7  C21 C 0 1 N N N 21.229 65.973 20.385 5.905  -0.568 -1.064 C7  7M8 24 
7M8 O   O3  O 0 1 N N N 22.267 63.972 21.960 8.829  -0.619 1.294  O   7M8 25 
7M8 C5  C22 C 0 1 Y N N 21.154 68.026 18.846 3.676  0.477  -0.512 C5  7M8 26 
7M8 C   C23 C 0 1 Y N N 22.459 67.782 18.349 4.271  1.745  -0.393 C   7M8 27 
7M8 N1  N2  N 0 1 N N N 15.901 72.844 13.775 -5.231 0.087  -1.354 N1  7M8 28 
7M8 C22 C24 C 0 1 N N N 15.664 71.655 12.963 -5.196 0.353  -2.794 C22 7M8 29 
7M8 O1  O4  O 0 1 N N N 14.563 74.383 12.645 -7.477 -0.105 -1.046 O1  7M8 30 
7M8 N2  N3  N 0 1 N N N 15.863 74.935 14.503 -5.997 -0.329 0.668  N2  7M8 31 
7M8 C23 C25 C 0 1 N N N 18.930 74.027 18.424 -1.407 -0.434 2.766  C23 7M8 32 
7M8 H1  H1  H 0 1 N N N 24.015 68.399 17.047 3.978  3.800  0.005  H1  7M8 33 
7M8 H2  H2  H 0 1 N N N 22.758 70.297 16.126 1.559  3.601  0.382  H2  7M8 34 
7M8 H3  H3  H 0 1 N N N 20.205 65.574 22.254 6.410  -1.601 0.757  H3  7M8 35 
7M8 H4  H4  H 0 1 N N N 19.362 64.951 20.795 6.311  0.169  0.919  H4  7M8 36 
7M8 H5  H5  H 0 1 N N N 20.394 63.160 22.240 8.471  -1.361 -0.601 H5  7M8 37 
7M8 H6  H6  H 0 1 N N N 20.999 63.171 20.548 8.372  0.408  -0.439 H6  7M8 38 
7M8 H7  H7  H 0 1 N N N 17.609 68.859 20.179 1.963  -2.988 -0.819 H7  7M8 39 
7M8 H8  H8  H 0 1 N N N 18.784 66.876 20.998 4.381  -2.757 -1.184 H8  7M8 40 
7M8 H9  H9  H 0 1 N N N 17.416 75.621 16.821 -4.098 -0.608 2.820  H9  7M8 41 
7M8 H10 H10 H 0 1 N N N 17.510 70.930 15.189 -2.381 0.332  -1.716 H10 7M8 42 
7M8 H11 H11 H 0 1 N N N 16.073 76.794 15.459 -7.948 -0.580 1.394  H11 7M8 43 
7M8 H12 H12 H 0 1 N N N 15.853 76.867 13.678 -6.707 -1.561 2.210  H12 7M8 44 
7M8 H13 H13 H 0 1 N N N 14.458 76.478 14.740 -6.812 0.187  2.530  H13 7M8 45 
7M8 H14 H14 H 0 1 N N N 21.587 65.366 19.541 6.132  0.384  -1.545 H14 7M8 46 
7M8 H15 H15 H 0 1 N N N 22.088 66.313 20.982 6.231  -1.386 -1.707 H15 7M8 47 
7M8 H16 H16 H 0 1 N N N 22.708 63.144 22.112 9.791  -0.559 1.221  H16 7M8 48 
7M8 H17 H17 H 0 1 N N N 23.023 66.941 18.724 5.333  1.860  -0.556 H17 7M8 49 
7M8 H18 H18 H 0 1 N N N 16.220 70.805 13.386 -6.213 0.363  -3.187 H18 7M8 50 
7M8 H19 H19 H 0 1 N N N 14.589 71.423 12.957 -4.728 1.321  -2.974 H19 7M8 51 
7M8 H20 H20 H 0 1 N N N 16.005 71.840 11.934 -4.622 -0.427 -3.294 H20 7M8 52 
7M8 H21 H21 H 0 1 N N N 18.269 73.877 19.290 -1.237 0.538  3.228  H21 7M8 53 
7M8 H22 H22 H 0 1 N N N 19.826 73.399 18.534 -1.829 -1.117 3.502  H22 7M8 54 
7M8 H23 H23 H 0 1 N N N 19.228 75.084 18.370 -0.461 -0.833 2.400  H23 7M8 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7M8 O1  C20 DOUB N N 1  
7M8 C22 N1  SING N N 2  
7M8 C20 N1  SING N N 3  
7M8 C20 N2  SING N N 4  
7M8 N1  C18 SING N N 5  
7M8 N2  C21 SING N N 6  
7M8 N2  C17 SING N N 7  
7M8 C18 C17 DOUB Y N 8  
7M8 C18 C19 SING Y N 9  
7M8 C17 C16 SING Y N 10 
7M8 C19 C14 DOUB Y N 11 
7M8 O3  C24 DOUB N N 12 
7M8 C16 C15 DOUB Y N 13 
7M8 C14 C15 SING Y N 14 
7M8 C14 N   SING N N 15 
7M8 C24 N   SING N N 16 
7M8 C24 C3  SING N N 17 
7M8 C2  C3  DOUB Y N 18 
7M8 C2  C1  SING Y N 19 
7M8 C15 C23 SING N N 20 
7M8 N   C13 SING N N 21 
7M8 C3  C4  SING Y N 22 
7M8 C1  C   DOUB Y N 23 
7M8 C4  C5  DOUB Y N 24 
7M8 C4  C10 SING Y N 25 
7M8 C   C5  SING Y N 26 
7M8 C13 C10 SING N N 27 
7M8 C13 O2  DOUB N N 28 
7M8 C5  C6  SING Y N 29 
7M8 C10 C11 DOUB Y N 30 
7M8 C11 C12 SING Y N 31 
7M8 C6  C12 DOUB Y N 32 
7M8 C6  C7  SING N N 33 
7M8 C7  C8  SING N N 34 
7M8 C8  C9  SING N N 35 
7M8 C9  O   SING N N 36 
7M8 C1  H1  SING N N 37 
7M8 C2  H2  SING N N 38 
7M8 C8  H3  SING N N 39 
7M8 C8  H4  SING N N 40 
7M8 C9  H5  SING N N 41 
7M8 C9  H6  SING N N 42 
7M8 C11 H7  SING N N 43 
7M8 C12 H8  SING N N 44 
7M8 C16 H9  SING N N 45 
7M8 C19 H10 SING N N 46 
7M8 C21 H11 SING N N 47 
7M8 C21 H12 SING N N 48 
7M8 C21 H13 SING N N 49 
7M8 C7  H14 SING N N 50 
7M8 C7  H15 SING N N 51 
7M8 O   H16 SING N N 52 
7M8 C   H17 SING N N 53 
7M8 C22 H18 SING N N 54 
7M8 C22 H19 SING N N 55 
7M8 C22 H20 SING N N 56 
7M8 C23 H21 SING N N 57 
7M8 C23 H22 SING N N 58 
7M8 C23 H23 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7M8 InChI            InChI                1.03  "InChI=1S/C25H23N3O4/c1-14-12-20-21(27(3)25(32)26(20)2)13-19(14)28-23(30)17-8-4-7-16-15(6-5-11-29)9-10-18(22(16)17)24(28)31/h4,7-10,12-13,29H,5-6,11H2,1-3H3" 
7M8 InChIKey         InChI                1.03  OFWWWKWUCDUISA-UHFFFAOYSA-N                                                                                                                                   
7M8 SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C)c2cc(N3C(=O)c4cccc5c(CCCO)ccc(C3=O)c45)c(C)cc12"                                                                                                 
7M8 SMILES           CACTVS               3.385 "CN1C(=O)N(C)c2cc(N3C(=O)c4cccc5c(CCCO)ccc(C3=O)c45)c(C)cc12"                                                                                                 
7M8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3C(=O)c4cccc5c4c(ccc5CCCO)C3=O)N(C(=O)N2C)C"                                                                                                     
7M8 SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3C(=O)c4cccc5c4c(ccc5CCCO)C3=O)N(C(=O)N2C)C"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7M8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "6-(3-oxidanylpropyl)-2-(1,3,6-trimethyl-2-oxidanylidene-benzimidazol-5-yl)benzo[de]isoquinoline-1,3-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7M8 "Create component" 2016-11-20 RCSB 
7M8 "Initial release"  2017-05-03 RCSB 
# 
