data_KT8
#

_chem_comp.id                                   KT8
_chem_comp.name                                 "2'3'-cyclic-GMP-2'F-2'dAMP"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H23 F N10 O12 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-20
_chem_comp.pdbx_modified_date                   2019-11-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       676.402
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KT8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S27
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KT8  C1   C1   C  0  1  Y  N  N  -16.783  21.786   -7.710    6.395  -0.285   0.167  C1   KT8   1  
KT8  N2   N1   N  0  1  Y  N  N  -18.043  21.933   -7.448    5.310   0.549   0.175  N2   KT8   2  
KT8  C3   C2   C  0  1  N  N  N  -15.063  19.992   -7.657    8.502  -0.459   1.343  C3   KT8   3  
KT8  C4   C3   C  0  1  Y  N  N  -18.508  20.767   -7.029    5.541   1.513   1.113  C4   KT8   4  
KT8  N5   N2   N  0  1  Y  N  N  -22.537  15.419   -9.533   -7.689   0.622   0.228  N5   KT8   5  
KT8  C11  C4   C  0  1  Y  N  N  -21.719  16.372   -9.974   -6.931  -0.470   0.202  C11  KT8   6  
KT8  C13  C5   C  0  1  Y  N  N  -19.870  14.768   -9.760   -8.840  -1.720   0.980  C13  KT8   7  
KT8  C14  C6   C  0  1  Y  N  N  -20.719  18.122  -10.701   -5.423  -2.071   0.051  C14  KT8   8  
KT8  C15  C7   C  0  1  N  N  R  -22.934  20.040   -8.931   -2.503   1.110   0.167  C15  KT8   9  
KT8  C16  C8   C  0  1  N  N  R  -23.293  18.582   -8.932   -3.969   0.923   0.614  C16  KT8  10  
KT8  C17  C9   C  0  1  N  N  R  -23.168  18.261  -10.366   -4.635   0.237  -0.591  C17  KT8  11  
KT8  N    N3   N  0  1  N  N  N  -14.219  20.892   -8.104    8.766  -1.559   0.604  N    KT8  12  
KT8  C    C10  C  0  1  N  N  N  -14.607  22.133   -8.333    7.865  -1.999  -0.320  C    KT8  13  
KT8  O    O1   O  0  1  N  N  N  -14.693  18.837   -7.443    9.301  -0.057   2.173  O    KT8  14  
KT8  C10  C11  C  0  1  Y  N  N  -22.077  14.218   -9.224   -8.948   0.555   0.605  C10  KT8  15  
KT8  C12  C12  C  0  1  Y  N  N  -20.317  16.102  -10.128   -7.492  -1.700   0.585  C12  KT8  16  
KT8  C18  C13  C  0  1  N  N  R  -23.432  20.559  -10.262   -2.320   0.084  -0.962  C18  KT8  17  
KT8  C19  C14  C  0  1  N  N  N  -22.672  21.700  -10.889   -1.434  -1.068  -0.482  C19  KT8  18  
KT8  C2   C15  C  0  1  Y  N  N  -16.444  20.414   -7.425    7.277   0.216   1.131  C2   KT8  19  
KT8  C5   C16  C  0  1  N  N  R  -21.225  23.506   -7.851    2.196   0.437   0.746  C5   KT8  20  
KT8  C6   C17  C  0  1  N  N  R  -20.027  22.912   -8.535    3.123  -0.553  -0.001  C6   KT8  21  
KT8  C7   C18  C  0  1  N  N  R  -18.859  23.140   -7.590    4.122   0.429  -0.668  C7   KT8  22  
KT8  C8   C19  C  0  1  N  N  R  -20.839  23.481   -6.417    2.120   1.577  -0.305  C8   KT8  23  
KT8  C9   C20  C  0  1  N  N  N  -21.542  22.343   -5.751    1.604   2.850   0.345  C9   KT8  24  
KT8  F1   F1   F  0  1  N  N  N  -24.540  18.268   -8.481   -4.569   2.156   0.869  F1   KT8  25  
KT8  N1   N4   N  0  1  N  N  N  -15.841  22.587   -8.152    6.723  -1.383  -0.525  N1   KT8  26  
KT8  N3   N5   N  0  1  Y  N  N  -17.553  19.836   -7.014    6.698   1.314   1.673  N3   KT8  27  
KT8  N4   N6   N  0  1  Y  N  N  -20.792  13.906   -9.333   -9.519  -0.577   0.974  N4   KT8  28  
KT8  N6   N7   N  0  1  Y  N  N  -21.880  17.599  -10.359   -5.627  -0.735  -0.129  N6   KT8  29  
KT8  N7   N8   N  0  1  Y  N  N  -19.755  17.217  -10.565   -6.519  -2.635   0.470  N7   KT8  30  
KT8  N8   N9   N  0  1  N  N  N  -13.720  23.013   -8.785    8.158  -3.122  -1.053  N8   KT8  31  
KT8  N9   N10  N  0  1  N  N  N  -18.583  14.431   -9.857   -9.447  -2.902   1.367  N9   KT8  32  
KT8  O1   O2   O  0  1  N  N  N  -19.451  23.294   -6.342    3.471   1.706  -0.774  O1   KT8  33  
KT8  O10  O3   O  0  1  N  N  N  -21.535  24.844   -8.222    0.923  -0.099   1.039  O10  KT8  34  
KT8  O2   O4   O  0  1  N  N  N  -21.425  21.215   -6.567    0.185   2.752   0.514  O2   KT8  35  
KT8  O20  O5   O  0  1  N  N  N  -21.990  18.906   -6.588   -1.023   4.549  -0.784  O20  KT8  36  
KT8  O21  O6   O  0  1  N  N  N  -18.971  21.818  -11.346    0.896  -2.681   0.570  O21  KT8  37  
KT8  O3   O7   O  0  1  N  N  N  -23.358  20.377   -5.288   -0.342   2.482  -2.061  O3   KT8  38  
KT8  O4   O8   O  0  1  N  N  N  -20.536  23.367  -12.207    0.986  -3.111  -1.912  O4   KT8  39  
KT8  O5   O9   O  0  1  N  N  N  -23.180  19.472  -11.102   -3.605  -0.430  -1.323  O5   KT8  40  
KT8  O7   O10  O  0  1  N  N  N  -23.462  20.551   -7.746   -2.295   2.434  -0.308  O7   KT8  41  
KT8  O8   O11  O  0  1  N  N  N  -21.281  21.453  -10.814   -0.179  -1.015  -1.160  O8   KT8  42  
KT8  O9   O12  O  0  1  N  N  N  -19.895  23.455   -9.829    2.431  -1.251  -1.022  O9   KT8  43  
KT8  P    P1   P  0  1  N  N  N  -22.590  20.215   -6.509   -0.866   3.078  -0.660  P    KT8  44  
KT8  P1   P2   P  0  1  N  N  N  -20.190  22.543  -11.065    1.039  -2.030  -0.895  P1   KT8  45  
KT8  H9   H1   H  0  1  N  N  N  -19.533  20.591   -6.736    4.864   2.319   1.354  H9   KT8  46  
KT8  H15  H2   H  0  1  N  N  N  -20.573  19.136  -11.042   -4.491  -2.586  -0.128  H15  KT8  47  
KT8  H4   H3   H  0  1  N  N  N  -21.837  20.126   -8.918   -1.829   0.888   0.991  H4   KT8  48  
KT8  H5   H4   H  0  1  N  N  N  -22.525  18.029   -8.371   -4.023   0.281   1.489  H5   KT8  49  
KT8  H6   H5   H  0  1  N  N  N  -23.968  17.578  -10.688   -5.118   0.981  -1.220  H6   KT8  50  
KT8  H8   H6   H  0  1  N  N  N  -13.268  20.634   -8.274    9.600  -2.037   0.732  H8   KT8  51  
KT8  H14  H7   H  0  1  N  N  N  -22.769  13.468   -8.872   -9.537   1.461   0.614  H14  KT8  52  
KT8  H7   H8   H  0  1  N  N  N  -24.504  20.798  -10.203   -1.862   0.562  -1.825  H7   KT8  53  
KT8  H18  H9   H  0  1  N  N  N  -22.906  22.632  -10.353   -1.275  -0.981   0.588  H18  KT8  54  
KT8  H17  H10  H  0  1  N  N  N  -22.968  21.799  -11.944   -1.922  -2.017  -0.700  H17  KT8  55  
KT8  H    H11  H  0  1  N  N  N  -22.095  22.852   -8.009    2.692   0.804   1.646  H    KT8  56  
KT8  H1   H12  H  0  1  N  N  N  -20.186  21.826   -8.614    3.631  -1.208   0.685  H1   KT8  57  
KT8  H2   H13  H  0  1  N  N  N  -18.261  24.010   -7.899    4.388   0.065  -1.652  H2   KT8  58  
KT8  H3   H14  H  0  1  N  N  N  -21.134  24.426   -5.938    1.482   1.263  -1.125  H3   KT8  59  
KT8  H11  H15  H  0  1  N  N  N  -22.604  22.593   -5.612    2.069   2.957   1.330  H11  KT8  60  
KT8  H10  H16  H  0  1  N  N  N  -21.081  22.143   -4.772    1.863   3.719  -0.259  H10  KT8  61  
KT8  H20  H17  H  0  1  N  N  N  -13.999  23.956   -8.968    7.526  -3.449  -1.712  H20  KT8  62  
KT8  H21  H18  H  0  1  N  N  N  -12.773  22.733   -8.942    8.998  -3.587  -0.913  H21  KT8  63  
KT8  H23  H19  H  0  1  N  N  N  -18.464  13.481   -9.568  -10.379  -2.903   1.638  H23  KT8  64  
KT8  H22  H20  H  0  1  N  N  N  -18.283  14.531  -10.806   -8.941  -3.729   1.368  H22  KT8  65  
KT8  H19  H21  H  0  1  N  N  N  -22.302  25.136   -7.743    0.305   0.541   1.418  H19  KT8  66  
KT8  H12  H22  H  0  1  N  N  N  -18.664  22.040  -12.217    0.071  -3.167   0.707  H12  KT8  67  
KT8  H13  H23  H  0  1  N  N  N  -23.312  19.578   -4.776    0.511   2.837  -2.345  H13  KT8  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KT8  O4   P1   DOUB  N  N   1  
KT8  O21  P1   SING  N  N   2  
KT8  O5   C17  SING  N  N   3  
KT8  O5   C18  SING  N  N   4  
KT8  P1   O8   SING  N  N   5  
KT8  P1   O9   SING  N  N   6  
KT8  C19  O8   SING  N  N   7  
KT8  C19  C18  SING  N  N   8  
KT8  C14  N7   DOUB  Y  N   9  
KT8  C14  N6   SING  Y  N  10  
KT8  N7   C12  SING  Y  N  11  
KT8  C17  N6   SING  N  N  12  
KT8  C17  C16  SING  N  N  13  
KT8  N6   C11  SING  Y  N  14  
KT8  C18  C15  SING  N  N  15  
KT8  C12  C11  DOUB  Y  N  16  
KT8  C12  C13  SING  Y  N  17  
KT8  C11  N5   SING  Y  N  18  
KT8  N9   C13  SING  N  N  19  
KT8  O9   C6   SING  N  N  20  
KT8  C13  N4   DOUB  Y  N  21  
KT8  N5   C10  DOUB  Y  N  22  
KT8  N4   C10  SING  Y  N  23  
KT8  C16  C15  SING  N  N  24  
KT8  C16  F1   SING  N  N  25  
KT8  C15  O7   SING  N  N  26  
KT8  N8   C    SING  N  N  27  
KT8  C6   C5   SING  N  N  28  
KT8  C6   C7   SING  N  N  29  
KT8  C    N1   DOUB  N  N  30  
KT8  C    N    SING  N  N  31  
KT8  O10  C5   SING  N  N  32  
KT8  N1   C1   SING  N  N  33  
KT8  N    C3   SING  N  N  34  
KT8  C5   C8   SING  N  N  35  
KT8  O7   P    SING  N  N  36  
KT8  C1   N2   SING  Y  N  37  
KT8  C1   C2   DOUB  Y  N  38  
KT8  C3   O    DOUB  N  N  39  
KT8  C3   C2   SING  N  N  40  
KT8  C7   N2   SING  N  N  41  
KT8  C7   O1   SING  N  N  42  
KT8  N2   C4   SING  Y  N  43  
KT8  C2   N3   SING  Y  N  44  
KT8  C4   N3   DOUB  Y  N  45  
KT8  O20  P    DOUB  N  N  46  
KT8  O2   P    SING  N  N  47  
KT8  O2   C9   SING  N  N  48  
KT8  P    O3   SING  N  N  49  
KT8  C8   O1   SING  N  N  50  
KT8  C8   C9   SING  N  N  51  
KT8  C4   H9   SING  N  N  52  
KT8  C14  H15  SING  N  N  53  
KT8  C15  H4   SING  N  N  54  
KT8  C16  H5   SING  N  N  55  
KT8  C17  H6   SING  N  N  56  
KT8  N    H8   SING  N  N  57  
KT8  C10  H14  SING  N  N  58  
KT8  C18  H7   SING  N  N  59  
KT8  C19  H18  SING  N  N  60  
KT8  C19  H17  SING  N  N  61  
KT8  C5   H    SING  N  N  62  
KT8  C6   H1   SING  N  N  63  
KT8  C7   H2   SING  N  N  64  
KT8  C8   H3   SING  N  N  65  
KT8  C9   H11  SING  N  N  66  
KT8  C9   H10  SING  N  N  67  
KT8  N8   H20  SING  N  N  68  
KT8  N8   H21  SING  N  N  69  
KT8  N9   H23  SING  N  N  70  
KT8  N9   H22  SING  N  N  71  
KT8  O10  H19  SING  N  N  72  
KT8  O21  H12  SING  N  N  73  
KT8  O3   H13  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KT8  InChI             InChI                 1.03   "InChI=1S/C20H23FN10O12P2/c21-8-12-7(41-18(8)30-4-26-9-14(22)24-3-25-15(9)30)2-39-45(36,37)43-13-11(32)6(1-38-44(34,35)42-12)40-19(13)31-5-27-10-16(31)28-20(23)29-17(10)33/h3-8,11-13,18-19,32H,1-2H2,(H,34,35)(H,36,37)(H2,22,24,25)(H3,23,28,29,33)/t6-,7-,8-,11-,12-,13-,18-,19-/m1/s1"  
KT8  InChIKey          InChI                 1.03   VSWSFOHKUMIXAS-XBNNLADJSA-N  
KT8  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cnc7c(N)ncnc67"  
KT8  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cnc7c(N)ncnc67"  
KT8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6N=C(NC7=O)N)O)O)F)N"  
KT8  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6N=C(NC7=O)N)O)O)F)N"  
#
_pdbx_chem_comp_identifier.comp_id          KT8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12,18-tris(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-2-azanyl-1~{H}-purin-6-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KT8  "Create component"  2019-06-20  PDBE  
KT8  "Initial release"   2019-11-27  RCSB  
##
