data_RW8
# 
_chem_comp.id                                    RW8 
_chem_comp.name                                  "methyl 4-(2,3-dihydroindol-1-yl)-4-oxidanylidene-butanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H15 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-10-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        233.263 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RW8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ARG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RW8 C03 C1  C 0 1 N N N N N N -7.112 3.354 4.801 -3.418 -0.183 -0.003 C03 RW8 1  
RW8 C05 C2  C 0 1 N N N N N N -6.960 4.234 6.024 -2.401 0.929  -0.002 C05 RW8 2  
RW8 C06 C3  C 0 1 N N N N N N -5.872 5.291 5.967 -0.992 0.333  -0.002 C06 RW8 3  
RW8 C07 C4  C 0 1 N N N N N N -4.515 4.740 5.638 0.024  1.445  -0.001 C07 RW8 4  
RW8 C10 C5  C 0 1 N N N N N N -3.463 6.921 6.478 2.419  2.147  0.001  C10 RW8 5  
RW8 C11 C6  C 0 1 N N N N N N -2.045 7.375 6.668 3.720  1.327  0.003  C11 RW8 6  
RW8 C12 C7  C 0 1 Y N N N N N -1.218 6.375 5.888 3.262  -0.114 0.001  C12 RW8 7  
RW8 C13 C8  C 0 1 Y N N N N N 0.134  6.412 5.550 3.982  -1.293 0.002  C13 RW8 8  
RW8 C14 C9  C 0 1 Y N N N N N 0.665  5.372 4.793 3.324  -2.509 0.001  C14 RW8 9  
RW8 C15 C10 C 0 1 Y N N N N N -0.159 4.315 4.383 1.941  -2.542 -0.001 C15 RW8 10 
RW8 C16 C11 C 0 1 Y N N N N N -1.504 4.269 4.699 1.219  -1.368 -0.002 C16 RW8 11 
RW8 C17 C12 C 0 1 Y N N N N N -2.007 5.296 5.501 1.877  -0.136 -0.001 C17 RW8 12 
RW8 N09 N1  N 0 1 N N N N N N -3.393 5.573 5.904 1.340  1.155  -0.001 N09 RW8 13 
RW8 O04 O1  O 0 1 N N N N N N -7.134 2.180 4.829 -3.053 -1.335 -0.004 O04 RW8 14 
RW8 O08 O2  O 0 1 N N N N N N -4.381 3.666 5.152 -0.342 2.601  -0.001 O08 RW8 15 
RW8 H2  H2  H 0 1 N N N N N N -7.918 4.749 6.186 -2.535 1.545  -0.892 H2  RW8 16 
RW8 H3  H3  H 0 1 N N N N N N -6.746 3.580 6.882 -2.536 1.544  0.888  H3  RW8 17 
RW8 H4  H4  H 0 1 N N N N N N -5.818 5.787 6.947 -0.859 -0.283 0.888  H4  RW8 18 
RW8 H5  H5  H 0 1 N N N N N N -6.144 6.029 5.197 -0.858 -0.282 -0.892 H5  RW8 19 
RW8 H6  H6  H 0 1 N N N N N N -3.991 7.600 5.792 2.362  2.766  0.896  H6  RW8 20 
RW8 H7  H7  H 0 1 N N N N N N -3.987 6.896 7.445 2.365  2.769  -0.892 H7  RW8 21 
RW8 H8  H8  H 0 1 N N N N N N -1.771 7.359 7.733 4.305  1.541  -0.892 H8  RW8 22 
RW8 H9  H9  H 0 1 N N N N N N -1.905 8.390 6.269 4.304  1.542  0.898  H9  RW8 23 
RW8 H10 H10 H 0 1 N N N N N N 0.758  7.233 5.870 5.062  -1.265 0.003  H10 RW8 24 
RW8 H11 H11 H 0 1 N N N N N N 1.710  5.379 4.522 3.888  -3.430 0.001  H11 RW8 25 
RW8 H12 H12 H 0 1 N N N N N N 0.270  3.512 3.802 1.426  -3.491 -0.002 H12 RW8 26 
RW8 H13 H13 H 0 1 N N N N N N -2.139 3.472 4.341 0.140  -1.401 -0.003 H13 RW8 27 
RW8 O1  O3  O 0 1 N N N N N N ?      ?     ?     -4.729 0.106  0.002  O1  RW8 28 
RW8 C2  C13 C 0 1 N N N N N N ?      ?     ?     -5.651 -1.016 0.007  C2  RW8 29 
RW8 H1  H1  H 0 1 N N N N N N ?      ?     ?     -5.488 -1.624 -0.883 H1  RW8 30 
RW8 H14 H14 H 0 1 N N N N N N ?      ?     ?     -5.481 -1.622 0.896  H14 RW8 31 
RW8 H15 H15 H 0 1 N N N N N N ?      ?     ?     -6.675 -0.644 0.010  H15 RW8 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RW8 C15 C16 DOUB Y N 1  
RW8 C15 C14 SING Y N 2  
RW8 C16 C17 SING Y N 3  
RW8 C14 C13 DOUB Y N 4  
RW8 C03 O04 DOUB N N 5  
RW8 C03 C05 SING N N 6  
RW8 O08 C07 DOUB N N 7  
RW8 C17 C12 DOUB Y N 8  
RW8 C17 N09 SING N N 9  
RW8 C13 C12 SING Y N 10 
RW8 C07 N09 SING N N 11 
RW8 C07 C06 SING N N 12 
RW8 C12 C11 SING N N 13 
RW8 N09 C10 SING N N 14 
RW8 C06 C05 SING N N 15 
RW8 C10 C11 SING N N 16 
RW8 C05 H2  SING N N 17 
RW8 C05 H3  SING N N 18 
RW8 C06 H4  SING N N 19 
RW8 C06 H5  SING N N 20 
RW8 C10 H6  SING N N 21 
RW8 C10 H7  SING N N 22 
RW8 C11 H8  SING N N 23 
RW8 C11 H9  SING N N 24 
RW8 C13 H10 SING N N 25 
RW8 C14 H11 SING N N 26 
RW8 C15 H12 SING N N 27 
RW8 C16 H13 SING N N 28 
RW8 C03 O1  SING N N 29 
RW8 O1  C2  SING N N 30 
RW8 C2  H1  SING N N 31 
RW8 C2  H14 SING N N 32 
RW8 C2  H15 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RW8 InChI            InChI                1.03  "InChI=1S/C13H15NO3/c1-17-13(16)7-6-12(15)14-9-8-10-4-2-3-5-11(10)14/h2-5H,6-9H2,1H3" 
RW8 InChIKey         InChI                1.03  AYMVNVWATJUROX-UHFFFAOYSA-N                                                           
RW8 SMILES_CANONICAL CACTVS               3.385 "COC(=O)CCC(=O)N1CCc2ccccc12"                                                         
RW8 SMILES           CACTVS               3.385 "COC(=O)CCC(=O)N1CCc2ccccc12"                                                         
RW8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)CCC(=O)N1CCc2c1cccc2"                                                         
RW8 SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)CCC(=O)N1CCc2c1cccc2"                                                         
# 
_pdbx_chem_comp_identifier.comp_id           RW8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 4-(2,3-dihydroindol-1-yl)-4-oxidanylidene-butanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RW8 "Create component" 2020-10-27 PDBE 
RW8 "Initial release"  2021-08-04 RCSB 
RW8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RW8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C03 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
