data_V08
#

_chem_comp.id                                   V08
_chem_comp.name                                 "(2 {R},3 {S})-3-methanoyl-4-methyl-2-hydroxy-pentanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       160.168
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V08
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7O2L
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V08  C4   C1   C  0  1  N  N  R  62.544  -138.427  41.421  -0.536  -0.848   0.178  C4   V08   1  
V08  C7   C2   C  0  1  N  N  S  62.382  -136.953  41.745   0.567   0.140  -0.208  C7   V08   2  
V08  C8   C3   C  0  1  N  N  N  63.304  -136.175  40.851   1.931  -0.457   0.146  C8   V08   3  
V08  O8   O1   O  0  1  N  N  N  61.206  -140.376  41.731  -2.712  -0.014   0.531  O8   V08   4  
V08  C3   C4   C  0  1  N  N  N  61.561  -139.284  42.233  -1.870  -0.315  -0.281  C3   V08   5  
V08  O13  O2   O  0  1  N  N  N  61.168  -138.834  43.328  -2.121  -0.176  -1.592  O13  V08   6  
V08  O5   O3   O  0  1  N  N  N  63.888  -138.792  41.718  -0.553  -1.013   1.597  O5   V08   7  
V08  C37  C5   C  0  1  N  N  N  62.607  -136.027  39.511   2.129  -1.767  -0.619  C37  V08   8  
V08  C9   C6   C  0  1  N  N  N  63.534  -134.813  41.469   3.034   0.530  -0.240  C9   V08   9  
V08  C16  C7   C  0  1  N  N  N  62.819  -136.706  43.161   0.372   1.430   0.545  C16  V08  10  
V08  O17  O4   O  0  1  N  N  N  62.105  -136.061  43.915   0.201   2.462  -0.059  O17  V08  11  
V08  H1   H1   H  0  1  N  N  N  62.339  -138.579  40.351  -0.346  -1.810  -0.298  H1   V08  12  
V08  H2   H2   H  0  1  N  N  N  61.338  -136.638  41.598   0.522   0.334  -1.279  H2   V08  13  
V08  H3   H3   H  0  1  N  N  N  64.260  -136.705  40.727   1.976  -0.651   1.217  H3   V08  14  
V08  H4   H4   H  0  1  N  N  N  60.558  -139.447  43.722  -2.990   0.170  -1.838  H4   V08  15  
V08  H5   H5   H  0  1  N  N  N  64.017  -139.713  41.524  -0.717  -0.195   2.087  H5   V08  16  
V08  H6   H6   H  0  1  N  N  N  62.444  -137.021  39.070   2.084  -1.573  -1.691  H6   V08  17  
V08  H7   H7   H  0  1  N  N  N  61.638  -135.527  39.655   3.100  -2.192  -0.367  H7   V08  18  
V08  H8   H8   H  0  1  N  N  N  63.234  -135.425  38.836   1.342  -2.470  -0.344  H8   V08  19  
V08  H9   H9   H  0  1  N  N  N  64.039  -134.931  42.439   2.894   1.464   0.305  H9   V08  20  
V08  H10  H10  H  0  1  N  N  N  64.163  -134.208  40.799   4.006   0.106   0.012  H10  V08  21  
V08  H11  H11  H  0  1  N  N  N  62.567  -134.310  41.618   2.990   0.725  -1.312  H11  V08  22  
V08  H12  H12  H  0  1  N  N  N  63.762  -137.098  43.512   0.386   1.433   1.625  H12  V08  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V08  C37  C8   SING  N  N   1  
V08  C8   C9   SING  N  N   2  
V08  C8   C7   SING  N  N   3  
V08  C4   O5   SING  N  N   4  
V08  C4   C7   SING  N  N   5  
V08  C4   C3   SING  N  N   6  
V08  O8   C3   DOUB  N  N   7  
V08  C7   C16  SING  N  N   8  
V08  C3   O13  SING  N  N   9  
V08  C16  O17  DOUB  N  N  10  
V08  C4   H1   SING  N  N  11  
V08  C7   H2   SING  N  N  12  
V08  C8   H3   SING  N  N  13  
V08  O13  H4   SING  N  N  14  
V08  O5   H5   SING  N  N  15  
V08  C37  H6   SING  N  N  16  
V08  C37  H7   SING  N  N  17  
V08  C37  H8   SING  N  N  18  
V08  C9   H9   SING  N  N  19  
V08  C9   H10  SING  N  N  20  
V08  C9   H11  SING  N  N  21  
V08  C16  H12  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V08  InChI             InChI                 1.03   "InChI=1S/C7H12O4/c1-4(2)5(3-8)6(9)7(10)11/h3-6,9H,1-2H3,(H,10,11)/t5-,6+/m0/s1"  
V08  InChIKey          InChI                 1.03   YIJPJSMEWHRJCU-NTSWFWBYSA-N  
V08  SMILES_CANONICAL  CACTVS                3.385  "CC(C)[C@H](C=O)[C@@H](O)C(O)=O"  
V08  SMILES            CACTVS                3.385  "CC(C)[CH](C=O)[CH](O)C(O)=O"  
V08  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)[C@H](C=O)[C@H](C(=O)O)O"  
V08  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)C(C=O)C(C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          V08
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S})-3-methanoyl-4-methyl-2-oxidanyl-pentanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V08  "Create component"  2021-03-31  PDBE  
V08  "Modify name"       2021-07-07  PDBE  
V08  "Initial release"   2022-04-13  RCSB  
##
