data_W08
# 
_chem_comp.id                                    W08 
_chem_comp.name                                  "(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-N-(1-methylpiperidin-4-yl)-3,4-bis(oxidanyl)oxolane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2S,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxy-N-(1-methyl-4-piperidinyl)tetrahydro-2-furancarboxamide; (2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-N-(1-methylpiperidin-4-yl)oxolane-2-carboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-21 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.398 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W08 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OTR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W08 C02 C1  C 0 1 N N N 77.585 -10.413 8.760  1.935  0.138  0.281  C02 W08 1  
W08 C05 C2  C 0 1 N N N 75.154 -9.106  6.399  5.316  -0.754 -0.859 C05 W08 2  
W08 C08 C3  C 0 1 N N N 75.645 -6.566  7.333  6.278  1.425  0.789  C08 W08 3  
W08 C09 C4  C 0 1 N N N 76.617 -7.674  7.693  4.960  0.722  1.122  C09 W08 4  
W08 C11 C5  C 0 1 N N S 78.714 -11.415 8.777  0.668  -0.607 0.609  C11 W08 5  
W08 C13 C6  C 0 1 N N R 80.327 -11.913 7.350  -1.624 -0.504 0.519  C13 W08 6  
W08 C15 C7  C 0 1 Y N N 80.087 -11.255 5.005  -4.087 0.028  0.272  C15 W08 7  
W08 C17 C8  C 0 1 Y N N 78.738 -9.754  3.793  -6.077 -0.988 0.808  C17 W08 8  
W08 C19 C9  C 0 1 Y N N 80.287 -10.996 2.633  -6.202 1.067  -0.235 C19 W08 9  
W08 C23 C10 C 0 1 Y N N 81.605 -12.779 5.495  -2.686 1.543  -0.507 C23 W08 10 
W08 C24 C11 C 0 1 N N R 80.662 -10.502 7.947  -1.249 -1.495 -0.605 C24 W08 11 
W08 C26 C12 C 0 1 N N S 80.086 -10.553 9.045  0.293  -1.565 -0.545 C26 W08 12 
W08 C04 C13 C 0 1 N N N 75.977 -8.952  7.573  4.330  0.193  -0.169 C04 W08 13 
W08 C06 C14 C 0 1 N N N 75.125 -7.947  5.403  6.623  -0.007 -1.134 C06 W08 14 
W08 C10 C15 C 0 1 N N N 74.305 -5.964  5.774  8.511  1.079  -0.078 C10 W08 15 
W08 C21 C16 C 0 1 Y N N 80.704 -11.619 3.865  -4.798 1.112  -0.270 C21 W08 16 
W08 N03 N1  N 0 1 N N N 77.048 -9.935  7.498  3.097  -0.532 0.149  N03 W08 17 
W08 N07 N2  N 0 1 N N N 75.301 -6.619  5.943  7.187  0.478  0.132  N07 W08 18 
W08 N14 N3  N 0 1 Y N N 80.638 -11.971 6.036  -2.758 0.328  0.108  N14 W08 19 
W08 N16 N4  N 0 1 Y N N 79.088 -10.302 4.953  -4.761 -0.989 0.798  N16 W08 20 
W08 N18 N5  N 0 1 Y N N 79.316 -10.085 2.647  -6.789 0.005  0.306  N18 W08 21 
W08 N20 N6  N 0 1 N N N 80.937 -11.379 1.384  -6.957 2.103  -0.758 N20 W08 22 
W08 N22 N7  N 0 1 Y N N 81.636 -12.557 4.141  -3.884 2.000  -0.728 N22 W08 23 
W08 O01 O1  O 0 1 N N N 77.145 -9.991  9.779  1.910  1.342  0.131  O01 W08 24 
W08 O12 O2  O 0 1 N N N 78.849 -11.982 7.624  -0.445 0.309  0.703  O12 W08 25 
W08 O25 O3  O 0 1 N N N 82.155 -10.329 8.138  -1.819 -2.780 -0.350 O25 W08 26 
W08 O27 O4  O 0 1 N N N 80.943 -11.259 10.033 0.723  -2.895 -0.250 O27 W08 27 
W08 H1  H1  H 0 1 N N N 74.122 -9.274  6.740  5.514  -1.608 -0.212 H1  W08 28 
W08 H2  H2  H 0 1 N N N 75.512 -9.996  5.860  4.890  -1.101 -1.800 H2  W08 29 
W08 H3  H3  H 0 1 N N N 76.110 -5.594  7.552  6.083  2.265  0.122  H3  W08 30 
W08 H4  H4  H 0 1 N N N 74.731 -6.679  7.935  6.736  1.791  1.708  H4  W08 31 
W08 H5  H5  H 0 1 N N N 77.481 -7.635  7.013  5.152  -0.109 1.800  H5  W08 32 
W08 H6  H6  H 0 1 N N N 76.959 -7.535  8.729  4.280  1.429  1.597  H6  W08 33 
W08 H7  H7  H 0 1 N N N 78.580 -12.124 9.607  0.784  -1.162 1.540  H7  W08 34 
W08 H8  H8  H 0 1 N N N 80.851 -12.683 7.935  -1.861 -1.043 1.437  H8  W08 35 
W08 H9  H9  H 0 1 N N N 77.954 -9.012  3.784  -6.594 -1.830 1.244  H9  W08 36 
W08 H10 H10 H 0 1 N N N 82.232 -13.469 6.039  -1.770 2.050  -0.771 H10 W08 37 
W08 H11 H11 H 0 1 N N N 80.281 -9.724  7.269  -1.579 -1.117 -1.573 H11 W08 38 
W08 H12 H12 H 0 1 N N N 79.794 -9.569  9.441  0.728  -1.220 -1.483 H12 W08 39 
W08 H13 H13 H 0 1 N N N 75.372 -9.145  8.471  4.101  1.027  -0.832 H13 W08 40 
W08 H14 H14 H 0 1 N N N 74.151 -7.972  4.892  7.333  -0.683 -1.613 H14 W08 41 
W08 H15 H15 H 0 1 N N N 75.928 -8.117  4.671  6.427  0.839  -1.793 H15 W08 42 
W08 H16 H16 H 0 1 N N N 74.453 -4.956  6.190  8.424  1.919  -0.767 H16 W08 43 
W08 H17 H17 H 0 1 N N N 74.094 -5.889  4.697  8.906  1.430  0.876  H17 W08 44 
W08 H18 H18 H 0 1 N N N 73.457 -6.448  6.281  9.186  0.333  -0.498 H18 W08 45 
W08 H19 H19 H 0 1 N N N 77.397 -10.265 6.621  3.117  -1.495 0.266  H19 W08 46 
W08 H21 H21 H 0 1 N N N 80.536 -10.863 0.627  -7.925 2.058  -0.734 H21 W08 47 
W08 H22 H22 H 0 1 N N N 81.915 -11.179 1.442  -6.517 2.873  -1.151 H22 W08 48 
W08 H23 H23 H 0 1 N N N 82.331 -9.468  8.500  -1.615 -3.442 -1.025 H23 W08 49 
W08 H24 H24 H 0 1 N N N 80.497 -11.295 10.871 1.680  -2.984 -0.142 H24 W08 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W08 N20 C19 SING N N 1  
W08 C19 N18 DOUB Y N 2  
W08 C19 C21 SING Y N 3  
W08 N18 C17 SING Y N 4  
W08 C17 N16 DOUB Y N 5  
W08 C21 N22 SING Y N 6  
W08 C21 C15 DOUB Y N 7  
W08 N22 C23 DOUB Y N 8  
W08 N16 C15 SING Y N 9  
W08 C15 N14 SING Y N 10 
W08 C06 N07 SING N N 11 
W08 C06 C05 SING N N 12 
W08 C23 N14 SING Y N 13 
W08 C10 N07 SING N N 14 
W08 N07 C08 SING N N 15 
W08 N14 C13 SING N N 16 
W08 C05 C04 SING N N 17 
W08 C08 C09 SING N N 18 
W08 C13 O12 SING N N 19 
W08 C13 C24 SING N N 20 
W08 N03 C04 SING N N 21 
W08 N03 C02 SING N N 22 
W08 C04 C09 SING N N 23 
W08 O12 C11 SING N N 24 
W08 C24 O25 SING N N 25 
W08 C24 C26 SING N N 26 
W08 C02 C11 SING N N 27 
W08 C02 O01 DOUB N N 28 
W08 C11 C26 SING N N 29 
W08 C26 O27 SING N N 30 
W08 C05 H1  SING N N 31 
W08 C05 H2  SING N N 32 
W08 C08 H3  SING N N 33 
W08 C08 H4  SING N N 34 
W08 C09 H5  SING N N 35 
W08 C09 H6  SING N N 36 
W08 C11 H7  SING N N 37 
W08 C13 H8  SING N N 38 
W08 C17 H9  SING N N 39 
W08 C23 H10 SING N N 40 
W08 C24 H11 SING N N 41 
W08 C26 H12 SING N N 42 
W08 C04 H13 SING N N 43 
W08 C06 H14 SING N N 44 
W08 C06 H15 SING N N 45 
W08 C10 H16 SING N N 46 
W08 C10 H17 SING N N 47 
W08 C10 H18 SING N N 48 
W08 N03 H19 SING N N 49 
W08 N20 H21 SING N N 50 
W08 N20 H22 SING N N 51 
W08 O25 H23 SING N N 52 
W08 O27 H24 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W08 InChI            InChI                1.06  "InChI=1S/C16H23N7O4/c1-22-4-2-8(3-5-22)21-15(26)12-10(24)11(25)16(27-12)23-7-20-9-13(17)18-6-19-14(9)23/h6-8,10-12,16,24-25H,2-5H2,1H3,(H,21,26)(H2,17,18,19)/t10-,11+,12-,16+/m0/s1" 
W08 InChIKey         InChI                1.06  ROJYDYHGBJZLCS-MEQWQQMJSA-N                                                                                                                                                            
W08 SMILES_CANONICAL CACTVS               3.385 "CN1CCC(CC1)NC(=O)[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34"                                                                                                                      
W08 SMILES           CACTVS               3.385 "CN1CCC(CC1)NC(=O)[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34"                                                                                                                           
W08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                     
W08 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)C2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           W08 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-~{N}-(1-methylpiperidin-4-yl)-3,4-bis(oxidanyl)oxolane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W08 "Create component" 2023-04-21 PDBE 
W08 "Modify name"      2023-04-27 PDBE 
W08 "Initial release"  2023-05-24 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 W08 "(2S,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxy-N-(1-methyl-4-piperidinyl)tetrahydro-2-furancarboxamide" AUTHOR  ? 
2 W08 "(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-N-(1-methylpiperidin-4-yl)oxolane-2-carboxamide"             PUBCHEM ? 
# 
