data_WB8
# 
_chem_comp.id                                    WB8 
_chem_comp.name                                  "(4~{Z})-2-(1-adamantylamino)-4-(1,3-benzothiazol-6-ylmethylidene)-1~{H}-imidazol-5-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H22 N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-10 
_chem_comp.pdbx_modified_date                    2023-09-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        378.491 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WB8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P04 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WB8 N   N1  N 0 1 N N N 8.390  4.209  15.965 -1.979 3.476  0.091  N   WB8 1  
WB8 C   C1  C 0 1 N N N 7.833  3.589  17.064 -0.690 3.873  0.027  C   WB8 2  
WB8 O   O1  O 0 1 N N N 7.125  2.583  17.039 -0.268 5.015  0.038  O   WB8 3  
WB8 C1  C2  C 0 1 N N N 9.104  5.285  16.371 -2.013 2.106  0.051  C1  WB8 4  
WB8 C10 C3  C 0 1 N N N 11.174 7.874  14.567 -4.497 -0.697 0.110  C10 WB8 5  
WB8 C11 C4  C 0 1 N N N 11.701 6.936  16.821 -2.268 -0.616 1.235  C11 WB8 6  
WB8 C12 C5  C 0 1 N N N 8.305  4.431  18.191 0.100  2.631  -0.057 C12 WB8 7  
WB8 C13 C6  C 0 1 N N N 7.993  4.154  19.472 1.469  2.522  -0.140 C13 WB8 8  
WB8 C14 C7  C 0 1 Y N N 8.477  4.766  20.708 2.104  1.202  -0.093 C14 WB8 9  
WB8 C15 C8  C 0 1 Y N N 8.234  4.166  21.952 1.315  0.038  -0.092 C15 WB8 10 
WB8 C16 C9  C 0 1 Y N N 8.714  4.716  23.132 1.893  -1.187 -0.049 C16 WB8 11 
WB8 C17 C10 C 0 1 Y N N 9.458  5.897  23.089 3.300  -1.320 -0.005 C17 WB8 12 
WB8 C18 C11 C 0 1 Y N N 10.642 7.622  23.783 5.324  -2.297 0.075  C18 WB8 13 
WB8 C19 C12 C 0 1 Y N N 9.700  6.500  21.848 4.089  -0.161 -0.007 C19 WB8 14 
WB8 C2  C13 C 0 1 N N N 10.567 7.290  15.849 -3.086 -0.108 0.046  C2  WB8 15 
WB8 C20 C14 C 0 1 Y N N 9.218  5.951  20.674 3.495  1.093  -0.056 C20 WB8 16 
WB8 C3  C15 C 0 1 N N N 9.660  8.343  16.497 -2.412 -0.540 -1.258 C3  WB8 17 
WB8 C4  C16 C 0 1 N N N 10.476 9.600  16.831 -2.331 -2.066 -1.310 C4  WB8 18 
WB8 C5  C17 C 0 1 N N N 11.598 9.234  17.802 -1.513 -2.574 -0.121 C5  WB8 19 
WB8 C6  C18 C 0 1 N N N 12.514 8.195  17.155 -2.187 -2.143 1.184  C6  WB8 20 
WB8 C7  C19 C 0 1 N N N 13.113 8.767  15.871 -3.598 -2.731 1.247  C7  WB8 21 
WB8 C8  C20 C 0 1 N N N 11.989 9.133  14.902 -4.416 -2.224 0.058  C8  WB8 22 
WB8 C9  C21 C 0 1 N N N 11.075 10.173 15.547 -3.742 -2.655 -1.246 C9  WB8 23 
WB8 N1  N2  N 0 1 N N N 9.771  6.093  15.518 -3.164 1.354  0.095  N1  WB8 24 
WB8 N2  N3  N 0 1 N N N 9.084  5.460  17.687 -0.808 1.609  -0.035 N2  WB8 25 
WB8 N3  N4  N 0 1 Y N N 10.012 6.567  24.187 4.051  -2.434 0.041  N3  WB8 26 
WB8 S   S1  S 0 1 Y N N 10.647 7.931  22.078 5.779  -0.653 0.053  S   WB8 27 
WB8 H1  H1  H 0 1 N N N 8.283  3.910  15.017 -2.750 4.061  0.157  H1  WB8 28 
WB8 H2  H2  H 0 1 N N N 10.367 8.137  13.868 -4.977 -0.389 1.039  H2  WB8 29 
WB8 H3  H3  H 0 1 N N N 11.833 7.126  14.101 -5.080 -0.335 -0.738 H3  WB8 30 
WB8 H4  H4  H 0 1 N N N 11.273 6.522  17.746 -1.263 -0.196 1.189  H4  WB8 31 
WB8 H5  H5  H 0 1 N N N 12.360 6.189  16.356 -2.748 -0.308 2.164  H5  WB8 32 
WB8 H6  H6  H 0 1 N N N 7.276  3.358  19.606 2.076  3.410  -0.239 H6  WB8 33 
WB8 H7  H7  H 0 1 N N N 7.659  3.253  21.993 0.238  0.121  -0.125 H7  WB8 34 
WB8 H8  H8  H 0 1 N N N 8.514  4.234  24.077 1.273  -2.071 -0.048 H8  WB8 35 
WB8 H9  H9  H 0 1 N N N 11.142 8.281  24.477 6.023  -3.120 0.113  H9  WB8 36 
WB8 H10 H10 H 0 1 N N N 9.414  6.438  19.730 4.109  1.982  -0.061 H10 WB8 37 
WB8 H11 H11 H 0 1 N N N 8.852  8.607  15.799 -2.996 -0.178 -2.105 H11 WB8 38 
WB8 H12 H12 H 0 1 N N N 9.227  7.933  17.421 -1.407 -0.120 -1.304 H12 WB8 39 
WB8 H13 H13 H 0 1 N N N 9.819  10.350 17.296 -1.851 -2.374 -2.239 H13 WB8 40 
WB8 H14 H14 H 0 1 N N N 12.180 10.135 18.046 -1.455 -3.662 -0.157 H14 WB8 41 
WB8 H15 H15 H 0 1 N N N 11.164 8.817  18.723 -0.507 -2.155 -0.166 H15 WB8 42 
WB8 H16 H16 H 0 1 N N N 13.323 7.933  17.853 -1.604 -2.504 2.031  H16 WB8 43 
WB8 H17 H17 H 0 1 N N N 13.768 8.016  15.406 -3.539 -3.819 1.211  H17 WB8 44 
WB8 H18 H18 H 0 1 N N N 13.699 9.667  16.109 -4.078 -2.424 2.176  H18 WB8 45 
WB8 H19 H19 H 0 1 N N N 12.420 9.545  13.978 -5.421 -2.643 0.104  H19 WB8 46 
WB8 H20 H20 H 0 1 N N N 11.657 11.075 15.785 -4.325 -2.293 -2.093 H20 WB8 47 
WB8 H21 H21 H 0 1 N N N 10.265 10.433 14.849 -3.684 -3.743 -1.282 H21 WB8 48 
WB8 H22 H22 H 0 1 N N N 9.719  5.851  14.549 -4.028 1.792  0.158  H22 WB8 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WB8 C10 C8  SING N N 1  
WB8 C10 C2  SING N N 2  
WB8 C8  C9  SING N N 3  
WB8 C8  C7  SING N N 4  
WB8 N1  C2  SING N N 5  
WB8 N1  C1  SING N N 6  
WB8 C9  C4  SING N N 7  
WB8 C2  C3  SING N N 8  
WB8 C2  C11 SING N N 9  
WB8 C7  C6  SING N N 10 
WB8 N   C1  SING N N 11 
WB8 N   C   SING N N 12 
WB8 C1  N2  DOUB N N 13 
WB8 C3  C4  SING N N 14 
WB8 C11 C6  SING N N 15 
WB8 C4  C5  SING N N 16 
WB8 O   C   DOUB N N 17 
WB8 C   C12 SING N N 18 
WB8 C6  C5  SING N N 19 
WB8 N2  C12 SING N N 20 
WB8 C12 C13 DOUB N Z 21 
WB8 C13 C14 SING N N 22 
WB8 C20 C14 DOUB Y N 23 
WB8 C20 C19 SING Y N 24 
WB8 C14 C15 SING Y N 25 
WB8 C19 S   SING Y N 26 
WB8 C19 C17 DOUB Y N 27 
WB8 C15 C16 DOUB Y N 28 
WB8 S   C18 SING Y N 29 
WB8 C17 C16 SING Y N 30 
WB8 C17 N3  SING Y N 31 
WB8 C18 N3  DOUB Y N 32 
WB8 N   H1  SING N N 33 
WB8 C10 H2  SING N N 34 
WB8 C10 H3  SING N N 35 
WB8 C11 H4  SING N N 36 
WB8 C11 H5  SING N N 37 
WB8 C13 H6  SING N N 38 
WB8 C15 H7  SING N N 39 
WB8 C16 H8  SING N N 40 
WB8 C18 H9  SING N N 41 
WB8 C20 H10 SING N N 42 
WB8 C3  H11 SING N N 43 
WB8 C3  H12 SING N N 44 
WB8 C4  H13 SING N N 45 
WB8 C5  H14 SING N N 46 
WB8 C5  H15 SING N N 47 
WB8 C6  H16 SING N N 48 
WB8 C7  H17 SING N N 49 
WB8 C7  H18 SING N N 50 
WB8 C8  H19 SING N N 51 
WB8 C9  H20 SING N N 52 
WB8 C9  H21 SING N N 53 
WB8 N1  H22 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WB8 InChI            InChI                1.06  "InChI=1S/C21H22N4OS/c26-19-17(6-12-1-2-16-18(7-12)27-11-22-16)23-20(24-19)25-21-8-13-3-14(9-21)5-15(4-13)10-21/h1-2,6-7,11,13-15H,3-5,8-10H2,(H2,23,24,25,26)/b17-6-/t13-,14+,15-,21-" 
WB8 InChIKey         InChI                1.06  HEVBCYZPXGZFGS-KDBINBPISA-N                                                                                                                                                             
WB8 SMILES_CANONICAL CACTVS               3.385 "O=C\1NC(=NC\1=C\c2ccc3ncsc3c2)NC45CC6CC(CC(C6)C4)C5"                                                                                                                                   
WB8 SMILES           CACTVS               3.385 "O=C1NC(=NC1=Cc2ccc3ncsc3c2)NC45CC6CC(CC(C6)C4)C5"                                                                                                                                      
WB8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1/C=C\3/C(=O)NC(=N3)NC45CC6CC(C4)CC(C6)C5)scn2"                                                                                                                               
WB8 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C=C3C(=O)NC(=N3)NC45CC6CC(C4)CC(C6)C5)scn2"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           WB8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{Z})-2-(1-adamantylamino)-4-(1,3-benzothiazol-6-ylmethylidene)-1~{H}-imidazol-5-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WB8 "Create component"   2023-05-10 PDBE 
WB8 "Initial release"    2023-05-17 RCSB 
WB8 "Obsolete component" 2023-07-18 PDBE 
# 
