data_WT8
# 
_chem_comp.id                                    WT8 
_chem_comp.name                                  " 7-Acetamido-5-acetimidoyl-3,5,7,9-tetradeoxy-L-glycero-L-manno-nonulosonic aci" 
_chem_comp.type                                  L-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C13 H23 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-12 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        333.338 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WT8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QQD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WT8 N1  N1  N 0 1 N N N N N N 279.240 305.548 277.143 -2.162 0.643  0.780  N1  WT8 1  
WT8 C4  C1  C 0 1 N N S N N N 276.856 303.600 276.867 0.250  -0.985 0.472  C4  WT8 2  
WT8 C5  C2  C 0 1 N N R N N N 278.343 303.242 276.710 0.188  0.503  0.115  C5  WT8 3  
WT8 C6  C3  C 0 1 N N S N N N 279.272 304.383 276.277 -1.231 0.862  -0.331 C6  WT8 4  
WT8 C7  C4  C 0 1 N N N N N N 275.639 305.186 278.234 -0.675 -3.041 -0.502 C7  WT8 5  
WT8 C8  C5  C 0 1 N N N N N N 275.956 306.077 279.399 -1.100 -3.862 -1.692 C8  WT8 6  
WT8 C10 C6  C 0 1 N N N N N N 277.505 300.342 276.872 2.881  1.320  0.569  C10 WT8 7  
WT8 C13 C7  C 0 1 N N N N N N 278.723 307.852 277.595 -4.418 0.162  1.672  C13 WT8 8  
WT8 C1  C8  C 0 1 N N R N N N 277.500 301.198 275.629 2.469  0.498  -0.625 C1  WT8 9  
WT8 C11 C9  C 0 1 N N N N N N 281.269 303.545 277.554 -1.000 3.220  0.462  C11 WT8 10 
WT8 C12 C10 C 0 1 N N N N N N 279.021 306.752 276.620 -3.462 0.392  0.530  C12 WT8 11 
WT8 C2  C11 C 0 1 N N N N N N 276.110 301.784 275.394 2.623  -0.992 -0.297 C2  WT8 12 
WT8 C3  C12 C 0 1 N N S N N N 276.098 303.291 275.586 1.686  -1.351 0.860  C3  WT8 13 
WT8 C9  C13 C 0 1 N N S N N N 280.709 303.882 276.177 -1.276 2.331  -0.753 C9  WT8 14 
WT8 N4  N2  N 0 1 N N N N N N 276.584 304.951 277.327 -0.163 -1.783 -0.685 N4  WT8 15 
WT8 N9  N3  N 0 1 N N N N N N 274.482 304.692 278.147 -0.795 -3.523 0.692  N9  WT8 16 
WT8 O11 O1  O 0 1 N N N N N N 278.447 299.541 277.048 3.729  2.173  0.452  O11 WT8 17 
WT8 O12 O2  O 0 1 N N N N N N 276.566 300.472 277.687 2.305  1.106  1.762  O12 WT8 18 
WT8 O13 O3  O 0 1 N N N N N N 281.526 304.886 275.563 -2.569 2.635  -1.281 O13 WT8 19 
WT8 O14 O4  O 0 1 N N N N N N 279.053 306.944 275.415 -3.863 0.351  -0.614 O14 WT8 20 
WT8 O3  O5  O 0 1 N N N N N N 276.712 303.935 274.464 1.767  -2.753 1.125  O3  WT8 21 
WT8 O5  O6  O 0 1 N N N N N N 278.498 302.225 275.707 1.104  0.775  -0.947 O5  WT8 22 
WT8 H1  H1  H 0 1 N N N N N N 279.382 305.446 278.128 -1.841 0.676  1.695  H1  WT8 23 
WT8 H2  H2  H 0 1 N N N N N N 276.459 302.915 277.631 -0.417 -1.187 1.310  H2  WT8 24 
WT8 H3  H3  H 0 1 N N N N N N 278.703 302.858 277.676 0.456  1.097  0.988  H3  WT8 25 
WT8 H4  H4  H 0 1 N N N N N N 278.961 304.693 275.269 -1.517 0.232  -1.173 H4  WT8 26 
WT8 H5  H5  H 0 1 N N N N N N 275.071 306.164 280.046 -0.244 -4.020 -2.348 H5  WT8 27 
WT8 H6  H6  H 0 1 N N N N N N 276.790 305.647 279.973 -1.479 -4.826 -1.351 H6  WT8 28 
WT8 H7  H7  H 0 1 N N N N N N 276.240 307.074 279.031 -1.883 -3.335 -2.236 H7  WT8 29 
WT8 H8  H8  H 0 1 N N N N N N 278.553 308.791 277.048 -4.439 1.044  2.312  H8  WT8 30 
WT8 H9  H9  H 0 1 N N N N N N 277.823 307.596 278.173 -5.417 -0.025 1.277  H9  WT8 31 
WT8 H10 H10 H 0 1 N N N N N N 279.575 307.976 278.280 -4.090 -0.701 2.252  H10 WT8 32 
WT8 H12 H12 H 0 1 N N N N N N 280.643 302.774 278.027 -0.015 2.988  0.865  H12 WT8 33 
WT8 H13 H13 H 0 1 N N N N N N 282.297 303.168 277.449 -1.033 4.267  0.161  H13 WT8 34 
WT8 H14 H14 H 0 1 N N N N N N 281.272 304.450 278.180 -1.757 3.037  1.225  H14 WT8 35 
WT8 H15 H15 H 0 1 N N N N N N 275.406 301.328 276.105 2.364  -1.586 -1.173 H15 WT8 36 
WT8 H16 H16 H 0 1 N N N N N N 275.794 301.553 274.366 3.654  -1.198 -0.008 H16 WT8 37 
WT8 H17 H17 H 0 1 N N N N N N 275.057 303.630 275.696 1.976  -0.793 1.751  H17 WT8 38 
WT8 H18 H18 H 0 1 N N N N N N 280.718 302.969 275.563 -0.520 2.514  -1.516 H18 WT8 39 
WT8 H19 H19 H 0 1 N N N N N N 277.114 305.714 276.957 -0.073 -1.422 -1.581 H19 WT8 40 
WT8 H20 H20 H 0 1 N N N N N N 273.896 304.974 278.907 -1.158 -4.413 0.822  H20 WT8 41 
WT8 H21 H21 H 0 1 N N N N N N 276.698 299.882 278.420 2.602  1.658  2.499  H21 WT8 42 
WT8 H22 H22 H 0 1 N N N N N N 282.421 304.573 275.501 -2.813 2.105  -2.052 H22 WT8 43 
WT8 H23 H23 H 0 1 N N N N N N 276.700 304.876 274.593 2.652  -3.056 1.371  H23 WT8 44 
WT8 O1  O7  O 0 1 N Y N N N N 277.280 300.570 274.424 3.298  0.829  -1.741 O1  WT8 45 
WT8 H24 H24 H 0 1 N N N N N N 278.034 300.036 274.202 3.250  1.758  -2.004 H24 WT8 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WT8 O3  C3  SING N N 1  
WT8 C2  C3  SING N N 2  
WT8 C2  C1  SING N N 3  
WT8 O14 C12 DOUB N N 4  
WT8 O13 C9  SING N N 5  
WT8 C3  C4  SING N N 6  
WT8 C1  O5  SING N N 7  
WT8 C1  C10 SING N N 8  
WT8 O5  C5  SING N N 9  
WT8 C9  C6  SING N N 10 
WT8 C9  C11 SING N N 11 
WT8 C6  C5  SING N N 12 
WT8 C6  N1  SING N N 13 
WT8 C12 N1  SING N N 14 
WT8 C12 C13 SING N N 15 
WT8 C5  C4  SING N N 16 
WT8 C4  N4  SING N N 17 
WT8 C10 O11 DOUB N N 18 
WT8 C10 O12 SING N N 19 
WT8 N4  C7  SING N N 20 
WT8 N9  C7  DOUB N N 21 
WT8 C7  C8  SING N N 22 
WT8 N1  H1  SING N N 23 
WT8 C4  H2  SING N N 24 
WT8 C5  H3  SING N N 25 
WT8 C6  H4  SING N N 26 
WT8 C8  H5  SING N N 27 
WT8 C8  H6  SING N N 28 
WT8 C8  H7  SING N N 29 
WT8 C13 H8  SING N N 30 
WT8 C13 H9  SING N N 31 
WT8 C13 H10 SING N N 32 
WT8 C11 H12 SING N N 33 
WT8 C11 H13 SING N N 34 
WT8 C11 H14 SING N N 35 
WT8 C2  H15 SING N N 36 
WT8 C2  H16 SING N N 37 
WT8 C3  H17 SING N N 38 
WT8 C9  H18 SING N N 39 
WT8 N4  H19 SING N N 40 
WT8 N9  H20 SING N N 41 
WT8 O12 H21 SING N N 42 
WT8 O13 H22 SING N N 43 
WT8 O3  H23 SING N N 44 
WT8 C1  O1  SING N N 45 
WT8 O1  H24 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WT8 InChI            InChI                1.06  "InChI=1S/C13H23N3O7/c1-5(17)9(16-7(3)18)11-10(15-6(2)14)8(19)4-13(22,23-11)12(20)21/h5,8-11,17,19,22H,4H2,1-3H3,(H2,14,15)(H,16,18)(H,20,21)/t5-,8-,9-,10-,11-,13+/m0/s1" 
WT8 InChIKey         InChI                1.06  GEBKXROHYJDJCX-RDDKKDHWSA-N                                                                                                                                                
WT8 SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)[C@H](NC(C)=O)[C@@H]1O[C@](O)(C[C@H](O)[C@@H]1NC(C)=N)C(O)=O"                                                                                                    
WT8 SMILES           CACTVS               3.385 "C[CH](O)[CH](NC(C)=O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=N)C(O)=O"                                                                                                            
WT8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/C)\NC1C(CC(OC1C(C(C)O)NC(=O)C)(C(=O)O)O)O"                                                                                                                       
WT8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1C(C(CC(O1)(C(=O)O)O)O)NC(=N)C)NC(=O)C)O"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           WT8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "6-(1-acetamido-2-oxidanyl-propyl)-5-(ethanimidoylamino)-2,4-bis(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WT8 "Create component"         2023-10-12 PDBE 
WT8 "Modify leaving atom flag" 2023-10-25 PDBE 
WT8 "Initial release"          2024-10-16 RCSB 
# 
