data_IR9
# 
_chem_comp.id                                    IR9 
_chem_comp.name                                  "[(2S,3R,4S,5S)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H15 N O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-26 
_chem_comp.pdbx_modified_date                    2017-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.132 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IR9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VJP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IR9 O3P O1  O 0 1 N N N -22.956 -33.558 -3.132 -4.930 -0.768 -0.930 O3P IR9 1  
IR9 P1  P1  P 0 1 N N N -23.121 -34.825 -2.336 -3.919 -1.321 -0.002 P1  IR9 2  
IR9 O1P O2  O 0 1 N N N -21.797 -35.495 -2.076 -4.371 -1.035 1.517  O1P IR9 3  
IR9 O2P O3  O 0 1 N N N -24.034 -35.778 -3.072 -3.790 -2.909 -0.233 O2P IR9 4  
IR9 O1  O4  O 0 1 N N N -23.803 -34.487 -0.926 -2.496 -0.621 -0.279 O1  IR9 5  
IR9 C1  C1  C 0 1 N N N -23.068 -33.836 0.098  -2.308 0.795  -0.259 C1  IR9 6  
IR9 C2  C2  C 0 1 N N S -23.838 -34.020 1.399  -0.844 1.120  -0.562 C2  IR9 7  
IR9 C3  C3  C 0 1 N N R -23.214 -33.351 2.609  -0.635 2.652  -0.671 C3  IR9 8  
IR9 O3  O5  O 0 1 N N N -22.823 -32.013 2.292  -1.440 3.342  0.287  O3  IR9 9  
IR9 N1  N1  N 0 1 N N N -25.201 -33.432 1.313  0.025  0.739  0.581  N1  IR9 10 
IR9 C5  C4  C 0 1 N N S -25.500 -32.881 2.654  1.251  1.555  0.445  C5  IR9 11 
IR9 C4  C5  C 0 1 N N S -24.385 -33.368 3.561  0.867  2.819  -0.345 C4  IR9 12 
IR9 O4  O6  O 0 1 N N N -24.227 -32.548 4.722  1.074  3.986  0.454  O4  IR9 13 
IR9 C6  C6  C 0 1 N N N -26.860 -33.324 3.137  2.319  0.767  -0.318 C6  IR9 14 
IR9 O6  O7  O 0 1 N N N -27.797 -33.102 2.091  2.735  -0.352 0.466  O6  IR9 15 
IR9 P2  P2  P 0 1 N N N -29.144 -32.281 2.354  3.851  -1.403 -0.029 P2  IR9 16 
IR9 O4P O8  O 0 1 N N N -28.841 -30.819 2.116  5.270  -0.654 -0.163 O4P IR9 17 
IR9 O5P O9  O 0 1 N N N -29.603 -32.498 3.785  3.974  -2.599 1.041  O5P IR9 18 
IR9 O6P O10 O 0 1 N N N -30.173 -32.798 1.375  3.459  -1.956 -1.344 O6P IR9 19 
IR9 H1  H1  H 0 1 N N N -21.100 -34.983 -2.469 -3.753 -1.370 2.181  H1  IR9 20 
IR9 H2  H2  H 0 1 N N N -24.317 -35.381 -3.887 -4.612 -3.396 -0.083 H2  IR9 21 
IR9 H3  H3  H 0 1 N N N -22.068 -34.285 0.186  -2.946 1.257  -1.013 H3  IR9 22 
IR9 H4  H4  H 0 1 N N N -22.970 -32.765 -0.133 -2.570 1.183  0.725  H4  IR9 23 
IR9 H5  H5  H 0 1 N N N -23.926 -35.097 1.602  -0.522 0.622  -1.476 H5  IR9 24 
IR9 H6  H6  H 0 1 N N N -22.378 -33.948 3.001  -0.851 3.000  -1.681 H6  IR9 25 
IR9 H7  H7  H 0 1 N N N -22.434 -31.606 3.058  -1.346 4.304  0.260  H7  IR9 26 
IR9 H8  H8  H 0 1 N N N -25.222 -32.705 0.627  -0.435 0.921  1.461  H8  IR9 27 
IR9 H10 H10 H 0 1 N N N -25.473 -31.782 2.613  1.626  1.829  1.431  H10 IR9 28 
IR9 H11 H11 H 0 1 N N N -24.593 -34.407 3.856  1.449  2.882  -1.265 H11 IR9 29 
IR9 H12 H12 H 0 1 N N N -25.003 -32.615 5.265  0.808  4.810  0.024  H12 IR9 30 
IR9 H13 H13 H 0 1 N N N -27.148 -32.741 4.025  1.905  0.415  -1.263 H13 IR9 31 
IR9 H14 H14 H 0 1 N N N -26.834 -34.394 3.393  3.175  1.412  -0.514 H14 IR9 32 
IR9 H15 H15 H 0 1 N N N -29.362 -30.502 1.388  5.590  -0.266 0.664  H15 IR9 33 
IR9 H16 H16 H 0 1 N N N -30.454 -32.920 3.784  4.630  -3.270 0.807  H16 IR9 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IR9 O3P P1  DOUB N N 1  
IR9 O2P P1  SING N N 2  
IR9 P1  O1P SING N N 3  
IR9 P1  O1  SING N N 4  
IR9 O1  C1  SING N N 5  
IR9 C1  C2  SING N N 6  
IR9 N1  C2  SING N N 7  
IR9 N1  C5  SING N N 8  
IR9 O6P P2  DOUB N N 9  
IR9 C2  C3  SING N N 10 
IR9 O6  P2  SING N N 11 
IR9 O6  C6  SING N N 12 
IR9 O4P P2  SING N N 13 
IR9 O3  C3  SING N N 14 
IR9 P2  O5P SING N N 15 
IR9 C3  C4  SING N N 16 
IR9 C5  C6  SING N N 17 
IR9 C5  C4  SING N N 18 
IR9 C4  O4  SING N N 19 
IR9 O1P H1  SING N N 20 
IR9 O2P H2  SING N N 21 
IR9 C1  H3  SING N N 22 
IR9 C1  H4  SING N N 23 
IR9 C2  H5  SING N N 24 
IR9 C3  H6  SING N N 25 
IR9 O3  H7  SING N N 26 
IR9 N1  H8  SING N N 27 
IR9 C5  H10 SING N N 28 
IR9 C4  H11 SING N N 29 
IR9 O4  H12 SING N N 30 
IR9 C6  H13 SING N N 31 
IR9 C6  H14 SING N N 32 
IR9 O4P H15 SING N N 33 
IR9 O5P H16 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IR9 SMILES           ACDLabs              12.01 "O=P(O)(OCC1C(C(C(N1)COP(O)(O)=O)O)O)O"                                                                                             
IR9 InChI            InChI                1.03  "InChI=1S/C6H15NO10P2/c8-5-3(1-16-18(10,11)12)7-4(6(5)9)2-17-19(13,14)15/h3-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/t3-,4-,5-,6+/m0/s1" 
IR9 InChIKey         InChI                1.03  JDMJAXIARMVOFV-OMMKOOBNSA-N                                                                                                         
IR9 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@H](CO[P](O)(O)=O)N[C@H]1CO[P](O)(O)=O"                                                                          
IR9 SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](CO[P](O)(O)=O)N[CH]1CO[P](O)(O)=O"                                                                               
IR9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@H]([C@H]([C@@H](N1)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                          
IR9 SMILES           "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(N1)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IR9 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,3R,4S,5S)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]"                    
IR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S},3~{R},4~{S},5~{S})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)pyrrolidin-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IR9 "Create component" 2017-04-26 RCSB 
IR9 "Initial release"  2017-12-27 RCSB 
# 
