data_PM9
# 
_chem_comp.id                                    PM9 
_chem_comp.name                                  "(2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}-4-(METHYLSULFANYL)BUTANOIC ACID" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ? 
_chem_comp.formula                               "C13 H19 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-01-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        378.338 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PM9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2VLH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PM9 N    N    N 0 1 N N N 25.314 83.403 7.216  2.392  -0.658 -0.159 N    PM9 1  
PM9 C    C    C 0 1 N N N 24.456 84.999 8.744  4.555  0.271  -0.311 C    PM9 2  
PM9 O2   O2   O 0 1 N N N 24.771 85.901 7.915  5.268  1.233  -0.544 O2   PM9 3  
PM9 CB   CB   C 0 1 N N N 24.679 82.452 9.436  2.551  1.705  -0.812 CB   PM9 4  
PM9 CG   CG   C 0 1 N N N 25.180 82.770 10.860 2.152  2.482  0.444  CG   PM9 5  
PM9 SD   SD   S 0 1 N N N 26.875 83.307 10.884 1.410  4.067  -0.036 SD   PM9 6  
PM9 CE   CE   C 0 1 N N N 27.783 82.063 9.986  1.010  4.830  1.561  CE   PM9 7  
PM9 O1   O1   O 0 1 N N N 23.831 85.273 9.795  5.109  -0.910 0.047  O1   PM9 8  
PM9 C2   C2   C 0 1 N N N 27.373 83.546 3.344  -0.009 -4.014 0.286  C2   PM9 9  
PM9 C2A  C2A  C 0 1 N N N 27.533 84.819 2.543  0.576  -5.395 0.435  C2A  PM9 10 
PM9 C3   C3   C 0 1 N N N 26.637 83.593 4.623  0.817  -2.946 0.143  C3   PM9 11 
PM9 C4   C4   C 0 1 N N N 26.512 82.324 5.389  0.254  -1.652 0.003  C4   PM9 12 
PM9 C4A  C4A  C 0 1 N N N 25.798 82.269 6.704  1.082  -0.519 -0.147 C4A  PM9 13 
PM9 C5   C5   C 0 1 N N N 27.152 81.119 4.820  -1.153 -1.520 0.018  C5   PM9 14 
PM9 C5A  C5A  C 0 1 N N N 27.036 79.803 5.557  -1.792 -0.163 -0.128 C5A  PM9 15 
PM9 C6   C6   C 0 1 N N N 27.814 81.196 3.602  -1.921 -2.625 0.163  C6   PM9 16 
PM9 N1   N1   N 0 1 N N N 27.922 82.378 2.926  -1.357 -3.850 0.289  N1   PM9 17 
PM9 O1P  O1P  O 0 1 N N N 24.666 79.367 7.611  -3.925 1.699  -1.453 O1P  PM9 18 
PM9 O3P  O3P  O 0 1 N N N 23.642 78.033 5.700  -4.023 1.928  1.059  O3P  PM9 19 
PM9 O3   O3   O 0 1 N N N 26.103 84.728 5.076  2.166  -3.114 0.135  O3   PM9 20 
PM9 O2P  O2P  O 0 1 N N N 25.806 77.307 6.815  -5.737 0.421  -0.247 O2P  PM9 21 
PM9 O4P  O4P  O 0 1 N N N 25.709 79.296 5.293  -3.214 -0.298 -0.082 O4P  PM9 22 
PM9 CA   CA   C 0 1 N N N 24.844 83.620 8.449  3.168  0.389  -0.413 CA   PM9 23 
PM9 P    P    P 0 1 N N N 24.907 78.456 6.421  -4.218 0.954  -0.208 P    PM9 24 
PM9 H4   H4   H 0 1 N N N 25.677 81.332 7.227  0.642  0.461  -0.253 H4   PM9 25 
PM9 H1   H1   H 0 1 N N N 23.663 86.207 9.830  6.075  -0.895 0.091  H1   PM9 26 
PM9 HBC1 1HBC H 0 0 N N N 25.256 81.597 9.054  1.667  1.522  -1.422 HBC1 PM9 27 
PM9 HBC2 2HBC H 0 0 N N N 23.602 82.240 9.511  3.274  2.286  -1.385 HBC2 PM9 28 
PM9 HGC1 1HGC H 0 0 N N N 24.555 83.573 11.278 1.430  1.901  1.017  HGC1 PM9 29 
PM9 HGC2 2HGC H 0 0 N N N 25.113 81.846 11.453 3.037  2.666  1.054  HGC2 PM9 30 
PM9 HEC1 1HEC H 0 0 N N N 27.970 82.414 8.960  0.316  4.190  2.105  HEC1 PM9 31 
PM9 HEC2 2HEC H 0 0 N N N 28.743 81.875 10.490 1.923  4.954  2.143  HEC2 PM9 32 
PM9 HEC3 3HEC H 0 0 N N N 27.197 81.133 9.954  0.550  5.804  1.393  HEC3 PM9 33 
PM9 H2A1 1H2A H 0 0 N N N 27.572 85.680 3.226  0.738  -5.609 1.491  H2A1 PM9 34 
PM9 H2A2 2H2A H 0 0 N N N 28.465 84.771 1.961  -0.114 -6.129 0.018  H2A2 PM9 35 
PM9 H2A3 3H2A H 0 0 N N N 26.678 84.932 1.860  1.526  -5.447 -0.097 H2A3 PM9 36 
PM9 H3   H3   H 0 1 N N N 25.976 84.666 6.015  2.448  -4.034 0.237  H3   PM9 37 
PM9 H5A1 1H5A H 0 0 N N N 27.796 79.094 5.198  -1.462 0.483  0.685  H5A1 PM9 38 
PM9 H5A2 2H5A H 0 0 N N N 27.199 79.939 6.636  -1.500 0.276  -1.082 H5A2 PM9 39 
PM9 H6   H6   H 0 1 N N N 28.252 80.303 3.181  -2.997 -2.529 0.175  H6   PM9 40 
PM9 H3P  H3P  H 0 1 N N N 22.934 77.945 6.327  -4.199 1.505  1.911  H3P  PM9 41 
PM9 H2P  H2P  H 0 1 N N N 25.995 76.775 6.051  -6.398 1.123  -0.322 H2P  PM9 42 
PM9 HN   HN   H 0 1 N N N 28.438 82.383 2.069  -1.929 -4.628 0.388  HN   PM9 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PM9 N   C4A  SING N N 1  
PM9 N   CA   DOUB N N 2  
PM9 C   O1   SING N N 3  
PM9 C   O2   DOUB N N 4  
PM9 C   CA   SING N N 5  
PM9 CB  CG   SING N N 6  
PM9 CB  CA   SING N N 7  
PM9 CG  SD   SING N N 8  
PM9 SD  CE   SING N N 9  
PM9 C2  C2A  SING N N 10 
PM9 C2  C3   DOUB N N 11 
PM9 C2  N1   SING N N 12 
PM9 C3  C4   SING N N 13 
PM9 C3  O3   SING N N 14 
PM9 C4  C4A  DOUB N N 15 
PM9 C4  C5   SING N N 16 
PM9 C5  C5A  SING N N 17 
PM9 C5  C6   DOUB N N 18 
PM9 C5A O4P  SING N N 19 
PM9 C6  N1   SING N N 20 
PM9 O1P P    DOUB N N 21 
PM9 O2P P    SING N N 22 
PM9 O3P P    SING N N 23 
PM9 O4P P    SING N N 24 
PM9 C4A H4   SING N N 25 
PM9 O1  H1   SING N Z 26 
PM9 CB  HBC1 SING N N 27 
PM9 CB  HBC2 SING N N 28 
PM9 CG  HGC1 SING N N 29 
PM9 CG  HGC2 SING N N 30 
PM9 CE  HEC1 SING N N 31 
PM9 CE  HEC2 SING N N 32 
PM9 CE  HEC3 SING N N 33 
PM9 C2A H2A1 SING N N 34 
PM9 C2A H2A2 SING N N 35 
PM9 C2A H2A3 SING N N 36 
PM9 O3  H3   SING N N 37 
PM9 C5A H5A1 SING N N 38 
PM9 C5A H5A2 SING N N 39 
PM9 C6  H6   SING N N 40 
PM9 O3P H3P  SING N N 41 
PM9 O2P H2P  SING N N 42 
PM9 N1  HN   SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PM9 SMILES           ACDLabs              10.04 "O=C(O)/C(=N/C=C1\C(O)=C(NC=C1COP(=O)(O)O)C)CCSC"                                                                                                        
PM9 SMILES_CANONICAL CACTVS               3.341 "CSCCC(=N\C=C1/C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O"                                                                                                       
PM9 SMILES           CACTVS               3.341 "CSCCC(=NC=C1C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O"                                                                                                         
PM9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=C(/C(=C\N=C(/CCSC)\C(=O)O)/C(=CN1)COP(=O)(O)O)O"                                                                                                    
PM9 SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=C(C(=CN=C(CCSC)C(=O)O)C(=CN1)COP(=O)(O)O)O"                                                                                                         
PM9 InChI            InChI                1.03  "InChI=1S/C13H19N2O7PS/c1-8-12(16)10(6-15-11(13(17)18)3-4-24-2)9(5-14-8)7-22-23(19,20)21/h5-6,14,16H,3-4,7H2,1-2H3,(H,17,18)(H2,19,20,21)/b10-6-,15-11+" 
PM9 InChIKey         InChI                1.03  UNHRYMFMFMQCNK-JNVWRRHBSA-N                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PM9 "SYSTEMATIC NAME" ACDLabs              10.04 "(2E)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}-4-(methylsulfanyl)butanoic acid" 
PM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2E)-2-[(Z)-[3-hydroxy-2-methyl-5-(phosphonooxymethyl)-1H-pyridin-4-ylidene]methyl]imino-4-methylsulfanyl-butanoic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PM9 "Create component"  2008-01-14 EBI  
PM9 "Modify descriptor" 2011-06-04 RCSB 
# 
