data_SO9
# 
_chem_comp.id                                    SO9 
_chem_comp.name                                  "(1S,2S,3R,4R)-3-({2-[3-(pyrrolidine-1-carbonyl)anilino]thieno[3,2-d]pyrimidin-4-yl}amino)bicyclo[2.2.1]hept-5-ene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 N6 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-07 
_chem_comp.pdbx_modified_date                    2022-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.578 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SO9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DKS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SO9 C2  C1  C 0 1 N N N -18.588 -38.784 -12.215 -5.927 0.554  0.801  C2  SO9 1  
SO9 C4  C2  C 0 1 N N S -20.075 -38.674 -11.941 -5.610 -0.872 0.433  C4  SO9 2  
SO9 C6  C3  C 0 1 N N S -20.852 -39.727 -12.809 -6.443 -1.316 -0.811 C6  SO9 3  
SO9 C8  C4  C 0 1 N N N -22.329 -39.316 -12.718 -6.110 -2.805 -0.971 C8  SO9 4  
SO9 C12 C5  C 0 1 N N N -20.879 -40.961 -11.846 -5.563 -0.720 -1.970 C12 SO9 5  
SO9 C16 C6  C 0 1 Y N N -19.522 -39.382 -8.212  -2.103 0.377  0.177  C16 SO9 6  
SO9 C18 C7  C 0 1 Y N N -20.669 -38.897 -6.240  -0.070 -0.668 0.486  C18 SO9 7  
SO9 C21 C8  C 0 1 Y N N -18.332 -39.493 -7.488  -1.452 1.621  0.211  C21 SO9 8  
SO9 C23 C9  C 0 1 Y N N -16.140 -39.699 -6.372  -0.451 3.929  0.246  C23 SO9 9  
SO9 C24 C10 C 0 1 Y N N -17.116 -39.408 -5.540  0.441  2.963  0.403  C24 SO9 10 
SO9 C27 C11 C 0 1 Y N N -24.160 -38.685 -4.994  2.749  -0.870 -0.020 C27 SO9 11 
SO9 C32 C12 C 0 1 N N N -27.327 -36.572 -5.292  7.099  1.304  -1.146 C32 SO9 12 
SO9 C33 C13 C 0 1 N N N -28.414 -35.518 -4.940  8.515  0.676  -1.168 C33 SO9 13 
SO9 C34 C14 C 0 1 N N N -28.665 -35.734 -3.421  8.526  -0.113 0.168  C34 SO9 14 
SO9 C35 C15 C 0 1 N N N -28.231 -37.197 -3.163  7.070  -0.611 0.287  C35 SO9 15 
SO9 C36 C16 C 0 1 Y N N -25.894 -39.359 -6.542  4.811  -1.779 0.844  C36 SO9 16 
SO9 C37 C17 C 0 1 Y N N -24.930 -39.561 -7.514  4.095  -2.717 1.561  C37 SO9 17 
SO9 C38 C18 C 0 1 Y N N -23.583 -39.328 -7.238  2.716  -2.742 1.488  C38 SO9 18 
SO9 O1  O1  O 0 1 N N N -17.990 -39.792 -11.907 -6.374 1.311  -0.034 O1  SO9 19 
SO9 N3  N1  N 0 1 N N N -17.910 -37.769 -12.797 -5.719 0.987  2.060  N3  SO9 20 
SO9 C9  C19 C 0 1 N N N -22.753 -39.549 -11.489 -4.861 -2.911 -1.378 C9  SO9 21 
SO9 C10 C20 C 0 1 N N R -21.590 -40.139 -10.681 -4.275 -1.501 -1.518 C10 SO9 22 
SO9 C13 C21 C 0 1 N N R -20.512 -39.022 -10.481 -4.142 -0.997 -0.045 C13 SO9 23 
SO9 N15 N2  N 0 1 N N N -19.487 -39.590 -9.582  -3.475 0.306  -0.006 N15 SO9 24 
SO9 N17 N3  N 0 1 Y N N -20.637 -39.083 -7.556  -1.385 -0.730 0.317  N17 SO9 25 
SO9 N19 N4  N 0 1 Y N N -19.570 -38.977 -5.520  0.582  0.475  0.525  N19 SO9 26 
SO9 C20 C22 C 0 1 Y N N -18.378 -39.276 -6.109  -0.068 1.655  0.391  C20 SO9 27 
SO9 S22 S1  S 0 1 Y N N -16.694 -39.862 -8.014  -2.064 3.262  0.062  S22 SO9 28 
SO9 N25 N5  N 0 1 N N N -21.847 -38.586 -5.564  0.643  -1.849 0.629  N25 SO9 29 
SO9 C26 C23 C 0 1 Y N N -23.175 -38.889 -5.963  2.039  -1.820 0.699  C26 SO9 30 
SO9 C28 C24 C 0 1 Y N N -25.504 -38.921 -5.273  4.142  -0.848 0.048  C28 SO9 31 
SO9 C29 C25 C 0 1 N N N -26.455 -38.668 -4.177  4.906  0.157  -0.720 C29 SO9 32 
SO9 O30 O2  O 0 1 N N N -26.459 -39.440 -3.238  4.334  0.881  -1.512 O30 SO9 33 
SO9 N31 N6  N 0 1 N N N -27.261 -37.573 -4.202  6.237  0.272  -0.542 N31 SO9 34 
SO9 H1  H1  H 0 1 N N N -20.429 -37.664 -12.195 -5.795 -1.535 1.278  H1  SO9 35 
SO9 H2  H2  H 0 1 N N N -20.452 -39.909 -13.817 -7.501 -1.056 -0.802 H2  SO9 36 
SO9 H3  H3  H 0 1 N N N -22.921 -38.906 -13.523 -6.785 -3.627 -0.781 H3  SO9 37 
SO9 H5  H5  H 0 1 N N N -21.485 -41.798 -12.224 -5.911 -1.024 -2.957 H5  SO9 38 
SO9 H6  H6  H 0 1 N N N -19.878 -41.327 -11.575 -5.445 0.361  -1.891 H6  SO9 39 
SO9 H7  H7  H 0 1 N N N -15.110 -39.823 -6.070  -0.217 4.984  0.233  H7  SO9 40 
SO9 H8  H8  H 0 1 N N N -16.948 -39.280 -4.481  1.493  3.168  0.532  H8  SO9 41 
SO9 H9  H9  H 0 1 N N N -23.875 -38.338 -4.012  2.225  -0.153 -0.634 H9  SO9 42 
SO9 H10 H10 H 0 1 N N N -27.588 -37.071 -6.237  7.094  2.207  -0.536 H10 SO9 43 
SO9 H11 H11 H 0 1 N N N -26.351 -36.075 -5.397  6.768  1.529  -2.160 H11 SO9 44 
SO9 H12 H12 H 0 1 N N N -28.049 -34.499 -5.135  8.632  0.005  -2.019 H12 SO9 45 
SO9 H13 H13 H 0 1 N N N -29.333 -35.695 -5.518  9.285  1.447  -1.172 H13 SO9 46 
SO9 H14 H14 H 0 1 N N N -28.059 -35.037 -2.823  9.218  -0.954 0.114  H14 SO9 47 
SO9 H15 H15 H 0 1 N N N -29.729 -35.595 -3.179  8.779  0.543  1.001  H15 SO9 48 
SO9 H16 H16 H 0 1 N N N -29.107 -37.860 -3.212  6.998  -1.637 -0.075 H16 SO9 49 
SO9 H17 H17 H 0 1 N N N -27.765 -37.279 -2.170  6.746  -0.562 1.327  H17 SO9 50 
SO9 H18 H18 H 0 1 N N N -26.936 -39.538 -6.761  5.890  -1.765 0.900  H18 SO9 51 
SO9 H19 H19 H 0 1 N N N -25.224 -39.902 -8.496  4.616  -3.436 2.176  H19 SO9 52 
SO9 H20 H20 H 0 1 N N N -22.845 -39.486 -8.010  2.161  -3.478 2.051  H20 SO9 53 
SO9 H21 H21 H 0 1 N N N -16.929 -37.856 -12.968 -5.365 0.381  2.730  H21 SO9 54 
SO9 H22 H22 H 0 1 N N N -18.390 -36.931 -13.057 -5.924 1.906  2.297  H22 SO9 55 
SO9 H23 H23 H 0 1 N N N -23.748 -39.357 -11.117 -4.339 -3.835 -1.579 H23 SO9 56 
SO9 H25 H25 H 0 1 N N N -21.856 -40.719 -9.785  -3.396 -1.404 -2.155 H25 SO9 57 
SO9 H26 H26 H 0 1 N N N -20.982 -38.140 -10.021 -3.602 -1.724 0.561  H26 SO9 58 
SO9 H27 H27 H 0 1 N N N -19.513 -40.581 -9.717  -3.993 1.120  -0.107 H27 SO9 59 
SO9 H28 H28 H 0 1 N N N -21.745 -38.093 -4.700  0.172  -2.696 0.682  H28 SO9 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SO9 C6  C8  SING N N 1  
SO9 C6  C4  SING N N 2  
SO9 C6  C12 SING N N 3  
SO9 N3  C2  SING N N 4  
SO9 C8  C9  DOUB N N 5  
SO9 C2  C4  SING N N 6  
SO9 C2  O1  DOUB N N 7  
SO9 C4  C13 SING N N 8  
SO9 C12 C10 SING N N 9  
SO9 C9  C10 SING N N 10 
SO9 C10 C13 SING N N 11 
SO9 C13 N15 SING N N 12 
SO9 N15 C16 SING N N 13 
SO9 C16 N17 DOUB Y N 14 
SO9 C16 C21 SING Y N 15 
SO9 S22 C21 SING Y N 16 
SO9 S22 C23 SING Y N 17 
SO9 N17 C18 SING Y N 18 
SO9 C37 C38 DOUB Y N 19 
SO9 C37 C36 SING Y N 20 
SO9 C21 C20 DOUB Y N 21 
SO9 C38 C26 SING Y N 22 
SO9 C36 C28 DOUB Y N 23 
SO9 C23 C24 DOUB Y N 24 
SO9 C18 N25 SING N N 25 
SO9 C18 N19 DOUB Y N 26 
SO9 C20 C24 SING Y N 27 
SO9 C20 N19 SING Y N 28 
SO9 C26 N25 SING N N 29 
SO9 C26 C27 DOUB Y N 30 
SO9 C32 C33 SING N N 31 
SO9 C32 N31 SING N N 32 
SO9 C28 C27 SING Y N 33 
SO9 C28 C29 SING N N 34 
SO9 C33 C34 SING N N 35 
SO9 N31 C29 SING N N 36 
SO9 N31 C35 SING N N 37 
SO9 C29 O30 DOUB N N 38 
SO9 C34 C35 SING N N 39 
SO9 C4  H1  SING N N 40 
SO9 C6  H2  SING N N 41 
SO9 C8  H3  SING N N 42 
SO9 C12 H5  SING N N 43 
SO9 C12 H6  SING N N 44 
SO9 C23 H7  SING N N 45 
SO9 C24 H8  SING N N 46 
SO9 C27 H9  SING N N 47 
SO9 C32 H10 SING N N 48 
SO9 C32 H11 SING N N 49 
SO9 C33 H12 SING N N 50 
SO9 C33 H13 SING N N 51 
SO9 C34 H14 SING N N 52 
SO9 C34 H15 SING N N 53 
SO9 C35 H16 SING N N 54 
SO9 C35 H17 SING N N 55 
SO9 C36 H18 SING N N 56 
SO9 C37 H19 SING N N 57 
SO9 C38 H20 SING N N 58 
SO9 N3  H21 SING N N 59 
SO9 N3  H22 SING N N 60 
SO9 C9  H23 SING N N 61 
SO9 C10 H25 SING N N 62 
SO9 C13 H26 SING N N 63 
SO9 N15 H27 SING N N 64 
SO9 N25 H28 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SO9 SMILES           ACDLabs              12.01 "NC(=O)C1C2C=CC(C2)C1Nc1nc(nc2ccsc12)Nc1cc(ccc1)C(=O)N1CCCC1"                                                                                                                                                               
SO9 InChI            InChI                1.06  "InChI=1S/C25H26N6O2S/c26-22(32)19-14-6-7-15(12-14)20(19)29-23-21-18(8-11-34-21)28-25(30-23)27-17-5-3-4-16(13-17)24(33)31-9-1-2-10-31/h3-8,11,13-15,19-20H,1-2,9-10,12H2,(H2,26,32)(H2,27,28,29,30)/t14-,15+,19+,20-/m1/s1" 
SO9 InChIKey         InChI                1.06  ALXDIYXXVBXYGK-VVVONTASSA-N                                                                                                                                                                                                 
SO9 SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@H]1[C@H]2C[C@H](C=C2)[C@H]1Nc3nc(Nc4cccc(c4)C(=O)N5CCCC5)nc6ccsc36"                                                                                                                                               
SO9 SMILES           CACTVS               3.385 "NC(=O)[CH]1[CH]2C[CH](C=C2)[CH]1Nc3nc(Nc4cccc(c4)C(=O)N5CCCC5)nc6ccsc36"                                                                                                                                                   
SO9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Nc2nc3ccsc3c(n2)N[C@@H]4[C@@H]5C[C@H]([C@@H]4C(=O)N)C=C5)C(=O)N6CCCC6"                                                                                                                                          
SO9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Nc2nc3ccsc3c(n2)NC4C5CC(C4C(=O)N)C=C5)C(=O)N6CCCC6"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SO9 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S,3R,4R)-3-({2-[3-(pyrrolidine-1-carbonyl)anilino]thieno[3,2-d]pyrimidin-4-yl}amino)bicyclo[2.2.1]hept-5-ene-2-carboxamide"                  
SO9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{R})-3-[[2-[(3-pyrrolidin-1-ylcarbonylphenyl)amino]thieno[3,2-d]pyrimidin-4-yl]amino]bicyclo[2.2.1]hept-5-ene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SO9 "Create component" 2022-07-07 RCSB 
SO9 "Initial release"  2022-08-03 RCSB 
# 
