data_WC9
# 
_chem_comp.id                                    WC9 
_chem_comp.name                                  "(4S,5aS,8S,8aR)-4-(2-methylpropyl)-N-[(1R,5Z,7R,8R,9R,10R,11S,12R)-10,11,12-trihydroxy-7-methyl-13-oxa-2-thiabicyclo[7.3.1]tridec-5-en-8-yl]octahydro-2H-oxepino[2,3-c]pyrrole-8-carboxamide (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H42 N2 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-29 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.676 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WC9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UD8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WC9 N   N1  N 0 1 N N N N N N 84.537 -59.060 -6.485 -2.447 -3.040 0.556  N   WC9 1  
WC9 CA  C1  C 0 1 N N S N N N 83.460 -58.385 -5.722 -1.685 -1.976 -0.142 CA  WC9 2  
WC9 C   C2  C 0 1 N N N N N N 82.215 -58.048 -6.573 -0.488 -1.573 0.679  C   WC9 3  
WC9 O   O1  O 0 1 N N N N N N 82.434 -57.687 -7.727 -0.445 -1.841 1.861  O   WC9 4  
WC9 CB  C3  C 0 1 N N R N N N 84.062 -57.135 -5.167 -2.648 -0.785 -0.294 CB  WC9 5  
WC9 CG  C4  C 0 1 N N S N N N 85.096 -56.816 -6.205 -3.946 -1.214 0.322  CG  WC9 6  
WC9 CD1 C5  C 0 1 N N N N N N 85.689 -58.200 -6.252 -3.883 -2.761 0.278  CD1 WC9 7  
WC9 CD2 C6  C 0 1 N N N N N N 86.224 -55.862 -5.666 -5.139 -0.726 -0.516 CD2 WC9 8  
WC9 CAB C7  C 0 1 N N R N N N 78.461 -58.611 -5.972 2.921  -0.382 -0.013 CAB WC9 9  
WC9 CAC C8  C 0 1 N N R N N N 78.614 -60.052 -6.144 3.157  -1.699 -0.757 CAC WC9 10 
WC9 CAD C9  C 0 1 N N S N N N 77.437 -60.736 -5.421 4.448  -1.585 -1.574 CAD WC9 11 
WC9 CAE C10 C 0 1 N N R N N N 76.092 -60.222 -6.041 4.989  -0.158 -1.459 CAE WC9 12 
WC9 CAF C11 C 0 1 N N R N N N 76.037 -58.727 -5.935 5.253  0.172  0.011  CAF WC9 13 
WC9 CAK C12 C 0 1 N N R N N N 79.640 -57.831 -6.632 1.700  -0.522 0.899  CAK WC9 14 
WC9 CAM C13 C 0 1 N N R N N N 79.250 -56.344 -6.675 1.421  0.817  1.584  CAM WC9 15 
WC9 CAN C14 C 0 1 N N N N N N 80.207 -55.508 -7.530 0.309  0.639  2.619  CAN WC9 16 
WC9 CAO C15 C 0 1 N N N N N N 75.804 -56.337 -4.507 4.239  2.794  -0.393 CAO WC9 17 
WC9 CAX C16 C 0 1 N N N N N N 83.336 -54.893 -5.275 -2.990 1.526  0.285  CAX WC9 18 
WC9 CAY C17 C 0 1 N N N N N N 84.562 -54.608 -4.384 -4.007 1.500  -0.821 CAY WC9 19 
WC9 CAZ C18 C 0 1 N N S N N N 85.774 -54.452 -5.294 -5.250 0.743  -0.360 CAZ WC9 20 
WC9 CBB C19 C 0 1 N N N N N N 86.872 -53.554 -4.625 -6.451 1.233  -1.172 CBB WC9 21 
WC9 CBC C20 C 0 1 N N N N N N 86.408 -52.065 -4.312 -7.739 0.676  -0.563 CBC WC9 22 
WC9 CBD C21 C 0 1 N N N N N N 85.648 -51.447 -5.474 -7.940 1.268  0.834  CBD WC9 23 
WC9 CBE C22 C 0 1 N N N N N N 87.565 -51.069 -4.098 -8.927 1.051  -1.452 CBE WC9 24 
WC9 CBF C23 C 0 1 N N N N N N 79.190 -55.843 -5.380 0.991  1.828  0.553  CBF WC9 25 
WC9 CBG C24 C 0 1 N N N N N N 76.751 -55.509 -5.375 3.212  2.826  0.741  CBG WC9 26 
WC9 CBH C25 C 0 1 N N N N N N 77.993 -55.453 -4.761 1.822  2.762  0.162  CBH WC9 27 
WC9 NAL N2  N 0 1 N N N N N N 80.964 -58.115 -5.966 0.536  -0.914 0.100  NAL WC9 28 
WC9 OAA O2  O 0 1 N N N N N N 77.178 -58.252 -6.637 4.070  -0.068 0.775  OAA WC9 29 
WC9 OAH O3  O 0 1 N N N N N N 74.957 -60.790 -5.367 4.029  0.759  -1.988 OAH WC9 30 
WC9 OAI O4  O 0 1 N N N N N N 77.535 -62.190 -5.476 5.416  -2.507 -1.068 OAI WC9 31 
WC9 OAJ O5  O 0 1 N N N N N N 78.491 -60.237 -7.519 3.281  -2.765 0.186  OAJ WC9 32 
WC9 OAW O6  O 0 1 N N N N N N 82.947 -56.214 -5.134 -2.048 0.425  0.134  OAW WC9 33 
WC9 SAG S1  S 0 1 N N N N N N 76.116 -58.083 -4.247 5.727  1.917  0.163  SAG WC9 34 
WC9 H1  H1  H 0 1 N N N N N N 84.314 -59.106 -7.459 -2.261 -3.026 1.547  H1  WC9 35 
WC9 H3  H3  H 0 1 N N N N N N 83.146 -59.032 -4.890 -1.365 -2.327 -1.124 H3  WC9 36 
WC9 H4  H4  H 0 1 N N N N N N 84.510 -57.297 -4.176 -2.840 -0.681 -1.362 H4  WC9 37 
WC9 H5  H5  H 0 1 N N N N N N 84.676 -56.479 -7.165 -4.024 -0.847 1.346  H5  WC9 38 
WC9 H6  H6  H 0 1 N N N N N N 86.179 -58.450 -5.299 -4.165 -3.132 -0.707 H6  WC9 39 
WC9 H7  H7  H 0 1 N N N N N N 86.417 -58.288 -7.072 -4.517 -3.196 1.051  H7  WC9 40 
WC9 H8  H8  H 0 1 N N N N N N 86.659 -56.326 -4.769 -4.976 -0.972 -1.566 H8  WC9 41 
WC9 H9  H9  H 0 1 N N N N N N 86.996 -55.776 -6.445 -6.054 -1.202 -0.165 H9  WC9 42 
WC9 H10 H10 H 0 1 N N N N N N 78.415 -58.355 -4.903 2.745  0.416  -0.734 H10 WC9 43 
WC9 H11 H11 H 0 1 N N N N N N 79.575 -60.412 -5.747 2.319  -1.896 -1.424 H11 WC9 44 
WC9 H12 H12 H 0 1 N N N N N N 77.459 -60.418 -4.368 4.239  -1.813 -2.619 H12 WC9 45 
WC9 H13 H13 H 0 1 N N N N N N 76.075 -60.506 -7.104 5.918  -0.075 -2.022 H13 WC9 46 
WC9 H14 H14 H 0 1 N N N N N N 75.104 -58.346 -6.376 6.061  -0.457 0.385  H14 WC9 47 
WC9 H15 H15 H 0 1 N N N N N N 79.711 -58.179 -7.673 1.896  -1.284 1.654  H15 WC9 48 
WC9 H16 H16 H 0 1 N N N N N N 78.253 -56.279 -7.136 2.327  1.167  2.080  H16 WC9 49 
WC9 H17 H17 H 0 1 N N N N N N 79.881 -54.457 -7.525 0.620  -0.093 3.365  H17 WC9 50 
WC9 H18 H18 H 0 1 N N N N N N 81.224 -55.578 -7.117 0.110  1.593  3.107  H18 WC9 51 
WC9 H19 H19 H 0 1 N N N N N N 80.203 -55.888 -8.562 -0.597 0.289  2.123  H19 WC9 52 
WC9 H20 H20 H 0 1 N N N N N N 75.792 -55.866 -3.513 3.813  2.278  -1.254 H20 WC9 53 
WC9 H21 H21 H 0 1 N N N N N N 74.806 -56.258 -4.963 4.501  3.813  -0.675 H21 WC9 54 
WC9 H22 H22 H 0 1 N N N N N N 83.596 -54.700 -6.326 -2.448 2.471  0.254  H22 WC9 55 
WC9 H23 H23 H 0 1 N N N N N N 82.507 -54.235 -4.976 -3.499 1.436  1.245  H23 WC9 56 
WC9 H24 H24 H 0 1 N N N N N N 84.722 -55.445 -3.689 -4.282 2.521  -1.085 H24 WC9 57 
WC9 H25 H25 H 0 1 N N N N N N 84.402 -53.682 -3.812 -3.583 1.002  -1.693 H25 WC9 58 
WC9 H26 H26 H 0 1 N N N N N N 85.447 -53.945 -6.214 -5.424 0.970  0.692  H26 WC9 59 
WC9 H27 H27 H 0 1 N N N N N N 87.172 -54.026 -3.678 -6.482 2.323  -1.153 H27 WC9 60 
WC9 H28 H28 H 0 1 N N N N N N 87.738 -53.509 -5.302 -6.358 0.890  -2.202 H28 WC9 61 
WC9 H29 H29 H 0 1 N N N N N N 85.768 -52.076 -3.417 -7.667 -0.409 -0.491 H29 WC9 62 
WC9 H30 H30 H 0 1 N N N N N N 85.348 -50.421 -5.213 -8.905 0.948  1.228  H30 WC9 63 
WC9 H31 H31 H 0 1 N N N N N N 86.294 -51.425 -6.364 -7.145 0.921  1.493  H31 WC9 64 
WC9 H32 H32 H 0 1 N N N N N N 84.751 -52.048 -5.687 -7.915 2.356  0.775  H32 WC9 65 
WC9 H33 H33 H 0 1 N N N N N N 88.198 -51.414 -3.267 -8.783 0.630  -2.447 H33 WC9 66 
WC9 H34 H34 H 0 1 N N N N N N 88.168 -51.005 -5.016 -9.844 0.654  -1.018 H34 WC9 67 
WC9 H35 H35 H 0 1 N N N N N N 87.155 -50.077 -3.859 -8.998 2.136  -1.523 H35 WC9 68 
WC9 H36 H36 H 0 1 N N N N N N 80.110 -55.749 -4.823 -0.004 1.782  0.134  H36 WC9 69 
WC9 H37 H37 H 0 1 N N N N N N 76.350 -54.491 -5.490 3.371  1.972  1.399  H37 WC9 70 
WC9 H38 H38 H 0 1 N N N N N N 76.850 -55.979 -6.365 3.327  3.749  1.309  H38 WC9 71 
WC9 H39 H39 H 0 1 N N N N N N 78.042 -55.087 -3.746 1.511  3.487  -0.575 H39 WC9 72 
WC9 H40 H40 H 0 1 N N N N N N 80.941 -58.375 -5.001 0.502  -0.700 -0.845 H40 WC9 73 
WC9 H41 H41 H 0 1 N N N N N N 74.990 -61.737 -5.433 3.871  0.659  -2.937 H41 WC9 74 
WC9 H42 H42 H 0 1 N N N N N N 76.795 -62.575 -5.022 6.260  -2.489 -1.540 H42 WC9 75 
WC9 H43 H43 H 0 1 N N N N N N 78.579 -61.160 -7.724 3.432  -3.631 -0.217 H43 WC9 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WC9 O   C   DOUB N N 1  
WC9 CAN CAM SING N N 2  
WC9 OAJ CAC SING N N 3  
WC9 CAM CAK SING N N 4  
WC9 CAM CBF SING N N 5  
WC9 OAA CAB SING N N 6  
WC9 OAA CAF SING N N 7  
WC9 CAK CAB SING N N 8  
WC9 CAK NAL SING N N 9  
WC9 C   NAL SING N N 10 
WC9 C   CA  SING N N 11 
WC9 N   CD1 SING N N 12 
WC9 N   CA  SING N N 13 
WC9 CD1 CG  SING N N 14 
WC9 CG  CD2 SING N N 15 
WC9 CG  CB  SING N N 16 
WC9 CAC CAB SING N N 17 
WC9 CAC CAD SING N N 18 
WC9 CAE CAF SING N N 19 
WC9 CAE CAD SING N N 20 
WC9 CAE OAH SING N N 21 
WC9 CAF SAG SING N N 22 
WC9 CA  CB  SING N N 23 
WC9 CD2 CAZ SING N N 24 
WC9 OAI CAD SING N N 25 
WC9 CBD CBC SING N N 26 
WC9 CBF CBH DOUB N Z 27 
WC9 CBG CBH SING N N 28 
WC9 CBG CAO SING N N 29 
WC9 CAZ CBB SING N N 30 
WC9 CAZ CAY SING N N 31 
WC9 CAX OAW SING N N 32 
WC9 CAX CAY SING N N 33 
WC9 CB  OAW SING N N 34 
WC9 CBB CBC SING N N 35 
WC9 CAO SAG SING N N 36 
WC9 CBC CBE SING N N 37 
WC9 N   H1  SING N N 38 
WC9 CA  H3  SING N N 39 
WC9 CB  H4  SING N N 40 
WC9 CG  H5  SING N N 41 
WC9 CD1 H6  SING N N 42 
WC9 CD1 H7  SING N N 43 
WC9 CD2 H8  SING N N 44 
WC9 CD2 H9  SING N N 45 
WC9 CAB H10 SING N N 46 
WC9 CAC H11 SING N N 47 
WC9 CAD H12 SING N N 48 
WC9 CAE H13 SING N N 49 
WC9 CAF H14 SING N N 50 
WC9 CAK H15 SING N N 51 
WC9 CAM H16 SING N N 52 
WC9 CAN H17 SING N N 53 
WC9 CAN H18 SING N N 54 
WC9 CAN H19 SING N N 55 
WC9 CAO H20 SING N N 56 
WC9 CAO H21 SING N N 57 
WC9 CAX H22 SING N N 58 
WC9 CAX H23 SING N N 59 
WC9 CAY H24 SING N N 60 
WC9 CAY H25 SING N N 61 
WC9 CAZ H26 SING N N 62 
WC9 CBB H27 SING N N 63 
WC9 CBB H28 SING N N 64 
WC9 CBC H29 SING N N 65 
WC9 CBD H30 SING N N 66 
WC9 CBD H31 SING N N 67 
WC9 CBD H32 SING N N 68 
WC9 CBE H33 SING N N 69 
WC9 CBE H34 SING N N 70 
WC9 CBE H35 SING N N 71 
WC9 CBF H36 SING N N 72 
WC9 CBG H37 SING N N 73 
WC9 CBG H38 SING N N 74 
WC9 CBH H39 SING N N 75 
WC9 NAL H40 SING N N 76 
WC9 OAH H41 SING N N 77 
WC9 OAI H42 SING N N 78 
WC9 OAJ H43 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WC9 SMILES           ACDLabs              12.01 "CC(C)CC1CC2CNC(C2OCC1)C(=O)NC1C2OC(SCCC=CC1C)C(O)C(O)C2O"                                                                                                                                                                                 
WC9 InChI            InChI                1.06  "InChI=1S/C25H42N2O6S/c1-13(2)10-15-7-8-32-22-16(11-15)12-26-18(22)24(31)27-17-14(3)6-4-5-9-34-25-21(30)19(28)20(29)23(17)33-25/h4,6,13-23,25-26,28-30H,5,7-12H2,1-3H3,(H,27,31)/b6-4-/t14-,15+,16+,17-,18+,19+,20-,21-,22-,23-,25-/m1/s1" 
WC9 InChIKey         InChI                1.06  GMONVEGLHZWYNO-JBYNEVPESA-N                                                                                                                                                                                                                
WC9 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@@H]1CCO[C@@H]2[C@H](CN[C@@H]2C(=O)N[C@@H]3[C@H](C)\C=C/CCS[C@H]4O[C@H]3[C@H](O)[C@H](O)[C@H]4O)C1"                                                                                                                               
WC9 SMILES           CACTVS               3.385 "CC(C)C[CH]1CCO[CH]2[CH](CN[CH]2C(=O)N[CH]3[CH](C)C=CCCS[CH]4O[CH]3[CH](O)[CH](O)[CH]4O)C1"                                                                                                                                                
WC9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1/C=C\CCS[C@@H]2[C@@H]([C@H]([C@H]([C@@H]([C@@H]1NC(=O)[C@@H]3[C@H]4[C@@H](C[C@@H](CCO4)CC(C)C)CN3)O2)O)O)O"                                                                                                                       
WC9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C=CCCSC2C(C(C(C(C1NC(=O)C3C4C(CC(CCO4)CC(C)C)CN3)O2)O)O)O"                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WC9 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,5aS,8S,8aR)-4-(2-methylpropyl)-N-[(1R,5Z,7R,8R,9R,10R,11S,12R)-10,11,12-trihydroxy-7-methyl-13-oxa-2-thiabicyclo[7.3.1]tridec-5-en-8-yl]octahydro-2H-oxepino[2,3-c]pyrrole-8-carboxamide (non-preferred name)"                                                         
WC9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},5~{a}~{S},8~{S},8~{a}~{R})-4-(2-methylpropyl)-~{N}-[(1~{R},5~{Z},7~{R},8~{R},9~{R},10~{R},11~{S},12~{R})-7-methyl-10,11,12-tris(oxidanyl)-13-oxa-2-thiabicyclo[7.3.1]tridec-5-en-8-yl]-3,4,5,5~{a},6,7,8,8~{a}-octahydro-2~{H}-oxepino[2,3-c]pyrrole-8-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WC9 "Create component" 2023-09-29 RCSB 
WC9 "Initial release"  2024-02-21 RCSB 
# 
